Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Reverse (-)

23751655 .. 23752121

Gene Structure 467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAGGATGAAGGAGCTATGAAGAAGCAAAACGAAGTCGCGATGATTCTTTCGTGGCATCTCTTCTCTACTGTAGCCAAACACTCTAACAACGTTTTCTCACCGGCGTCAATAACCGCAGTGTTCACCATGATGGCCTCTGGCCCCGGCAGTTCTTTGATCTCCGATCAAATCCTCTCCTTCCTCGGATCTTCTTCTATCGATGAGCTCAACTCCGTCTTCCGCGTCATTACTACTGTCTTCGCTGACGGTAGTAATATAGGCGGCCCAACGATCAAAGTGGCAAATGGCGCTTGGATCGATCAATCTTTCTCGATTGATTCGTCTTCCAAGAATCTCTTTGAGAATTTTTTCAAAGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034641 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046483 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0098772 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

121

Amino Acids

12.99

Weight (kDa)

4.77

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	18 - 121	6.9e-10	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	41, 225
AciI	CCGC	3 cut(s)	117, 223, 264
AclI	AACGTT	1 cut(s)	93
AclWI	GGATC	2 cut(s)	196, 305
AcsI	RAATTY	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	355
AluBI	AGCT	3 cut(s)	17, 208, 359
AluI	AGCT	3 cut(s)	17, 208, 359
Alw21I	GWGCWC	1 cut(s)	210
AlwI	GGATC	2 cut(s)	196, 305
AoxI	GGCC	3 cut(s)	135, 142, 265
ApoI	RAATTY	1 cut(s)	346
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	143, 266
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	93, 118
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	3 cut(s)	211, 232, 318
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	294
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	143, 266
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	3 cut(s)	211, 232, 318
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpuMI	CCSGG	1 cut(s)	147
Bsa29I	ATCGAT	2 cut(s)	201, 300
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	145, 184
Bse118I	RCCGGY	1 cut(s)	103
BseCI	ATCGAT	2 cut(s)	201, 300
BseDI	CCNNGG	2 cut(s)	145, 184
BseGI	GGATG	1 cut(s)	13
Bsh1236I	CGCG	2 cut(s)	41, 225
BshFI	GGCC	3 cut(s)	137, 144, 267
BshVI	ATCGAT	2 cut(s)	201, 300
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	104, 147
BsnI	GGCC	3 cut(s)	137, 144, 267
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	6 cut(s)	159, 166, 188, 273, 297, 301
Bsp68I	TCGCGA	1 cut(s)	41
BspACI	CCGC	3 cut(s)	117, 223, 264
BspANI	GGCC	3 cut(s)	137, 144, 267
BspDI	ATCGAT	2 cut(s)	201, 300
BspFNI	CGCG	2 cut(s)	41, 225
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	196, 305
BsrFI	RCCGGY	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	145, 184
BssMI	GATC	6 cut(s)	159, 166, 188, 273, 297, 301
BssNI	GRCGYC	1 cut(s)	107
Bst4CI	ACNGT	3 cut(s)	73, 238, 251
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	2 cut(s)	41, 225
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	6 cut(s)	162, 169, 191, 276, 300, 304
BstMBI	GATC	6 cut(s)	159, 166, 188, 273, 297, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	72
BstUI	CGCG	2 cut(s)	41, 225
BstV2I	GAAGAC	3 cut(s)	211, 232, 318
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
Bsu15I	ATCGAT	2 cut(s)	201, 300
BsuRI	GGCC	3 cut(s)	137, 144, 267
BsuTUI	ATCGAT	2 cut(s)	201, 300
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
BtuMI	TCGCGA	1 cut(s)	41
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	143, 266
ClaI	ATCGAT	2 cut(s)	201, 300
CseI	GACGC	2 cut(s)	96, 214
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	7 cut(s)	17, 77, 137, 144, 208, 267, 359
CviKI_1	RGCY	7 cut(s)	17, 77, 137, 144, 208, 267, 359
DpnI	GATC	6 cut(s)	161, 168, 190, 275, 299, 303
DpnII	GATC	6 cut(s)	159, 166, 188, 273, 297, 301
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	1 cut(s)	133
FaiI	YATR	3 cut(s)	20, 131, 260
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	265
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	265
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	1 cut(s)	265
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	137, 144, 267
HapII	CCGG	2 cut(s)	104, 147
HgaI	GACGC	2 cut(s)	96, 214
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	3 cut(s)	46, 320, 334
HpaII	CCGG	2 cut(s)	104, 147
HphI	GGTGA	2 cut(s)	93, 118
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	2 cut(s)	166, 188
Hpy188III	TCNNGA	2 cut(s)	40, 313
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	5, 190
HpyCH4III	ACNGT	3 cut(s)	73, 238, 251
HpyCH4IV	ACGT	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	6 cut(s)	159, 166, 188, 273, 297, 301
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	3 cut(s)	117, 126, 160
LweI	GCATC	1 cut(s)	67
MaeII	ACGT	1 cut(s)	93
MalI	GATC	6 cut(s)	161, 168, 190, 275, 299, 303
MboI	GATC	6 cut(s)	159, 166, 188, 273, 297, 301
MboII	GAAGA	7 cut(s)	34, 55, 183, 186, 211, 232, 318
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	346
MnlI	CCTC	3 cut(s)	148, 185, 194
MroXI	GAANNNNTTC	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	2 cut(s)	104, 147
MspR9I	CCNGG	1 cut(s)	147
MvnI	CGCG	2 cut(s)	41, 225
MwoI	GCNNNNNNNGC	1 cut(s)	290
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	6 cut(s)	159, 166, 188, 273, 297, 301
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	46, 320, 334
PkrI	GCNGC	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	143, 266
PsuI	RGATCY	1 cut(s)	188
RruI	TCGCGA	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	6 cut(s)	159, 166, 188, 273, 297, 301
Sau96I	GGNCC	2 cut(s)	143, 266
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	4 cut(s)	19, 96, 210, 361
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	72
SgrAI	CRCCGGYG	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	3 cut(s)	117, 223, 264
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	3 cut(s)	73, 238, 251
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	201, 300, 314
TasI	AATT	1 cut(s)	346
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	3 cut(s)	46, 320, 334
TscAI	CASTG	1 cut(s)	126
TspDTI	ATGAA	2 cut(s)	24, 35
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	126
XapI	RAATTY	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.