Rorug02G0236000

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000163
Physical Location & Seq
Reverse (-)
23580847 .. 23581590
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0236000.1

Sequence Viewer

Length: 744 bp
ATGGAAACACAAACCCAGCAACCAACCGAGGATGAAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAAGCGGAGCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAACATAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGAAGAGTGCTAGGGATTGTTCAATCTCAACTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGGTGAGGACATCTTTGACAACATGAAGACTACTTCCGATGAAGGTGGCGATCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

247

Amino Acids

27.6

Weight (kDa)

5.83

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 2.3e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 78, 394
Acc36I ACCTGC 3 cut(s) 78, 160, 394
AciI CCGC 3 cut(s) 82, 402, 739
AclWI GGATC 4 cut(s) 188, 363, 382, 463
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 611
AgsI TTSAA 3 cut(s) 220, 492, 587
AhlI ACTAGT 1 cut(s) 512
AjnI CCWGG 1 cut(s) 576
AleI CACNNNNGTG 1 cut(s) 669
AluBI AGCT 4 cut(s) 130, 193, 694, 719
AluI AGCT 4 cut(s) 130, 193, 694, 719
Alw21I GWGCWC 1 cut(s) 696
AlwI GGATC 4 cut(s) 188, 363, 382, 463
Ama87I CYCGRG 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 514
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 3 cut(s) 335, 566, 626
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 256, 696
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 427
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 578
BcnI CCSGG 1 cut(s) 55
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 2 cut(s) 480, 513
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 3 cut(s) 78, 160, 394
BisI GCNGC 2 cut(s) 51, 739
BlpI GCTNAGC 1 cut(s) 695
BlsI GCNGC 2 cut(s) 52, 740
Bme1390I CCNGG 2 cut(s) 55, 578
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 155, 737
BmrFI CCNGG 2 cut(s) 55, 578
BpiI GAAGAC 1 cut(s) 644
BpmI CTGGAG 2 cut(s) 173, 522
Bpu1102I GCTNAGC 1 cut(s) 695
BpuEI CTTGAG 2 cut(s) 107, 710
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse1I ACTGG 1 cut(s) 505
Bse8I GATNNNNATC 1 cut(s) 116
BseBI CCWGG 1 cut(s) 578
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMII CTCAG 1 cut(s) 709
BseNI ACTGG 1 cut(s) 505
BseRI GAGGAG 1 cut(s) 579
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 696
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 611
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 696
Bsp143I GATC 9 cut(s) 106, 180, 210, 308, 355, 374, 455, 571, 661
Bsp1720I GCTNAGC 1 cut(s) 695
BspACI CCGC 3 cut(s) 82, 402, 739
BspCNI CTCAG 1 cut(s) 708
BspLI GGNNCC 2 cut(s) 155, 737
BspMI ACCTGC 3 cut(s) 78, 160, 394
BspPI GGATC 4 cut(s) 188, 363, 382, 463
BsrI ACTGG 1 cut(s) 505
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 9 cut(s) 106, 180, 210, 308, 355, 374, 455, 571, 661
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 2 cut(s) 600, 668
Bst6I CTCTTC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 695
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 9 cut(s) 109, 183, 213, 311, 358, 377, 458, 574, 664
BstMBI GATC 9 cut(s) 106, 180, 210, 308, 355, 374, 455, 571, 661
BstMWI GCNNNNNNNGC 3 cut(s) 79, 401, 705
BstNI CCWGG 1 cut(s) 578
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 53, 576
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 3 cut(s) 180, 374, 455
BstYI RGATCY 3 cut(s) 180, 374, 455
BtsCI GGATG 2 cut(s) 37, 292
BtsIMutI CAGTG 1 cut(s) 596
BveI ACCTGC 3 cut(s) 78, 160, 394
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 202
CviAII CATG 9 cut(s) 70, 293, 301, 350, 466, 532, 553, 611, 634
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 695
DpnI GATC 9 cut(s) 108, 182, 212, 310, 357, 376, 457, 573, 663
DpnII GATC 9 cut(s) 106, 180, 210, 308, 355, 374, 455, 571, 661
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Ecl136II GAGCTC 1 cut(s) 694
Eco24I GRGCYC 2 cut(s) 256, 696
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 694
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 694
EcoO109I RGGNCCY 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 576
EcoT38I GRGCYC 2 cut(s) 256, 696
FaeI CATG 9 cut(s) 73, 296, 304, 353, 469, 535, 556, 614, 637
FaqI GGGAC 1 cut(s) 139
FatI CATG 9 cut(s) 69, 292, 300, 349, 465, 531, 552, 610, 633
Fnu4HI GCNGC 2 cut(s) 51, 739
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 696
Fsp4HI GCNGC 2 cut(s) 51, 739
FspBI CTAG 2 cut(s) 480, 513
GluI GCNGC 2 cut(s) 51, 739
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 173, 522
HapII CCGG 1 cut(s) 54
Hin1II CATG 9 cut(s) 73, 296, 304, 353, 469, 535, 556, 614, 637
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 2 cut(s) 94, 117
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 1 cut(s) 54
HphI GGTGA 3 cut(s) 335, 566, 626
Hpy166II GTNNAC 4 cut(s) 93, 244, 279, 424
Hpy188I TCNGA 3 cut(s) 111, 286, 649
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 733
Hpy8I GTNNAC 4 cut(s) 93, 244, 279, 424
HpyAV CCTTC 2 cut(s) 29, 647
HpyCH4III ACNGT 2 cut(s) 600, 668
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 383, 610
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 401, 705
HpyF3I CTNAG 1 cut(s) 695
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 9 cut(s) 73, 296, 304, 353, 469, 535, 556, 614, 637
KspAI GTTAAC 1 cut(s) 424
Kzo9I GATC 9 cut(s) 106, 180, 210, 308, 355, 374, 455, 571, 661
LmnI GCTCC 3 cut(s) 84, 127, 735
Lsp1109I GCAGC 1 cut(s) 62
MaeI CTAG 2 cut(s) 480, 513
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 334
MalI GATC 9 cut(s) 108, 182, 212, 310, 357, 376, 457, 573, 663
MboI GATC 9 cut(s) 106, 180, 210, 308, 355, 374, 455, 571, 661
MboII GAAGA 6 cut(s) 283, 369, 390, 484, 581, 649
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 3 cut(s) 180, 374, 455
MhlI GDGCHC 3 cut(s) 256, 300, 696
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 8 cut(s) 22, 131, 171, 346, 497, 557, 610, 703
MroXI GAANNNNTTC 1 cut(s) 514
MseI TTAA 2 cut(s) 366, 423
MslI CAYNNNNRTG 1 cut(s) 669
MspA1I CMGCKG 3 cut(s) 193, 404, 741
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 55, 578
MunI CAATTG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 578
MwoI GCNNNNNNNGC 3 cut(s) 79, 401, 705
NciI CCSGG 1 cut(s) 55
NdeII GATC 9 cut(s) 106, 180, 210, 308, 355, 374, 455, 571, 661
NlaIII CATG 9 cut(s) 73, 296, 304, 353, 469, 535, 556, 614, 637
NlaIV GGNNCC 2 cut(s) 155, 737
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 669
PaqCI CACCTGC 2 cut(s) 78, 394
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 514
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 740
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 576
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 2 cut(s) 155, 737
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 502, 534
PsuI RGATCY 3 cut(s) 180, 374, 455
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 669
SacI GAGCTC 1 cut(s) 696
SaqAI TTAA 2 cut(s) 366, 423
SatI GCNGC 2 cut(s) 51, 739
Sau3AI GATC 9 cut(s) 106, 180, 210, 308, 355, 374, 455, 571, 661
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 55, 578
SduI GDGCHC 3 cut(s) 256, 300, 696
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 2 cut(s) 122, 689
SmoI CTYRAG 2 cut(s) 122, 689
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 1 cut(s) 340
SsiI CCGC 3 cut(s) 82, 402, 739
SspMI CTAG 2 cut(s) 480, 513
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 2 cut(s) 53, 576
TaaI ACNGT 2 cut(s) 600, 668
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 741
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 2 cut(s) 366, 423
Tru9I TTAA 2 cut(s) 366, 423
TscAI CASTG 1 cut(s) 603
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 7 cut(s) 48, 281, 476, 541, 548, 650, 666
TspRI CASTG 1 cut(s) 603
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 514
XspI CTAG 2 cut(s) 480, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.