FvH4_2g15000

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000163
Physical Location & Seq
Reverse (-)
13178723 .. 13179825
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15000.t1

Sequence Viewer

Length: 942 bp
ATGGTGTACTCGCCGCTATCCATCTACATCGTCCTGAGCATAGTAGCCGCCGGGAAAAGTGGTTCCGATCAGGACCGGTTTCTTTCTTTTCTCAAGTCCAAGTCCGTGGACGACCTCAACTCCCTCGCCTACCATCTCATCACTTGCGTTCTAGCCGACGGATCGGATCGGCCAAAGGAGGGCCATGTCTTACAAGGCAACCCTAAAGAAGTCGATTTCAAGGCCAACCCAGAGAAAGTAAGAGTGGAAGTGAACTCATGGGTGGAGAAGGAGACACAAGGCCTCATCACTGATATTCTTTCTCCAAACTCAGTCACCGACCTAACAAGACGCATCTTTGCAAGTGCTTTATACTTCAAAGGCTCTTGGAGTGAGCATTACGACTTCTATGAACCATACACGTACTCAGAAGAAGAGAATCATCATGAGTTTCATCTCCTCAATGGGGACACAATCAAGGGAGTACCTTTTATGACGAGCAGTGACTCCCACCTTATTAAGGCTTTTGACGGCTTTAAAGTCTTGAAACTTATTTACCAATCAGATAATGAACATTACGGCCGAAGCGGAAGCTTCTCTACGTGCTTGCTTCTTCCAGACGCAATAGATGGGCTGCCAGCTCTAGCTGCGAGAGTTTGTTCAGAGCCCGGTTTCATAGATGCTACTGGTATTCTGGAGAAACTAGGACAGGCAAATTTGTTAGACAATGTGAAAATAGTTCATGAATCCATGATTGAAGTTGATGAACATGGAGCAACAGCTGCAGCTGCTACTGTTTATGAGGAAGAGTATGGTGACGAAATGGGTAGTGATAGCGATGATGAGGAGCCTCGAAAAGAAGACTTTGTGGCGGATCACCCATTCATGTTCTTCATCAGGGAAGACAGGGCTGGAACAGTGCTGTTTATGGGACATGTGCTCAATCCCATTGCTGCAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

314

Amino Acids

34.74

Weight (kDa)

4.68

Isoelectric Point (pI)

29.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 64 - 210 1.2e-21 Serpin (serine protease inhibitor)
Serpin PF00079 232 - 309 1e-17 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 14, 48, 567, 851
AclWI GGATC 3 cut(s) 169, 174, 861
AcoI YGGCCR 2 cut(s) 170, 559
AcsI RAATTY 1 cut(s) 694
AfaI GTAC 3 cut(s) 8, 404, 465
AfiI CCNNNNNNNGG 3 cut(s) 179, 445, 499
AflIII ACRYGT 2 cut(s) 399, 913
AgeI ACCGGT 1 cut(s) 75
AgsI TTSAA 4 cut(s) 220, 358, 526, 737
AloI GAACNNNNNNTCC 2 cut(s) 46, 78
AluBI AGCT 5 cut(s) 573, 620, 626, 761, 767
AluI AGCT 5 cut(s) 573, 620, 626, 761, 767
Alw21I GWGCWC 1 cut(s) 921
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 3 cut(s) 169, 174, 861
AoxI GGCC 5 cut(s) 170, 181, 222, 280, 559
ApeKI GCWGC 6 cut(s) 613, 626, 761, 764, 767, 932
ApoI RAATTY 1 cut(s) 694
AsiGI ACCGGT 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 73, 181
AsuC2I CCSGG 2 cut(s) 52, 648
AsuHPI GGTGA 3 cut(s) 307, 806, 848
AvaII GGWCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 648
BarI GAAGNNNNNNTAC 2 cut(s) 562, 594
BbsI GAAGAC 2 cut(s) 846, 888
Bbv12I GWGCWC 1 cut(s) 921
BbvI GCAGC 6 cut(s) 600, 613, 748, 754, 776, 919
BccI CCATC 3 cut(s) 29, 141, 602
BceAI ACGGC 2 cut(s) 526, 574
BcnI CCSGG 2 cut(s) 52, 648
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 3 cut(s) 152, 623, 683
BfmI CTRYAG 2 cut(s) 762, 933
BisI GCNGC 8 cut(s) 14, 48, 614, 627, 762, 765, 768, 933
BlsI GCNGC 8 cut(s) 15, 49, 615, 628, 763, 766, 769, 934
Bme1390I CCNGG 2 cut(s) 52, 648
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 73, 181
BmiI GGNNCC 2 cut(s) 64, 828
BmrFI CCNGG 2 cut(s) 52, 648
BmsI GCATC 2 cut(s) 342, 649
BpiI GAAGAC 2 cut(s) 846, 888
BpmI CTGGAG 1 cut(s) 695
Bpu10I CCTNAGC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 2 cut(s) 52, 648
BsaAI YACGTR 2 cut(s) 402, 582
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 445, 499
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 670
Bse3DI GCAATG 1 cut(s) 927
BseDI CCNNGG 1 cut(s) 105
BseLI CCNNNNNNNGG 3 cut(s) 179, 445, 499
BseMI GCAATG 1 cut(s) 927
BseMII CTCAG 3 cut(s) 26, 324, 420
BseNI ACTGG 1 cut(s) 670
BseRI GAGGAG 2 cut(s) 428, 839
BseX3I CGGCCG 1 cut(s) 559
BseXI GCAGC 6 cut(s) 600, 613, 748, 754, 776, 919
Bsh1285I CGRYCG 1 cut(s) 562
BshFI GGCC 5 cut(s) 172, 183, 224, 282, 561
BshTI ACCGGT 1 cut(s) 75
BsiEI CGRYCG 1 cut(s) 562
BsiHKAI GWGCWC 1 cut(s) 921
BsiSI CCGG 3 cut(s) 51, 76, 648
BslFI GGGAC 2 cut(s) 461, 924
BslI CCNNNNNNNGG 3 cut(s) 179, 445, 499
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 2 cut(s) 461, 924
BsnI GGCC 5 cut(s) 172, 183, 224, 282, 561
Bsp1286I GDGCHC 2 cut(s) 648, 921
Bsp143I GATC 4 cut(s) 67, 161, 166, 853
BspACI CCGC 4 cut(s) 14, 48, 567, 851
BspANI GGCC 5 cut(s) 172, 183, 224, 282, 561
BspCNI CTCAG 3 cut(s) 27, 323, 419
BspHI TCATGA 2 cut(s) 424, 721
BspLI GGNNCC 2 cut(s) 64, 828
BspMAI CTGCAG 2 cut(s) 766, 937
BspPI GGATC 3 cut(s) 169, 174, 861
BsrDI GCAATG 1 cut(s) 927
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 1 cut(s) 670
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 4 cut(s) 67, 161, 166, 853
Bst4CI ACNGT 2 cut(s) 775, 898
Bst6I CTCTTC 2 cut(s) 408, 780
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBAI YACGTR 2 cut(s) 402, 582
BstC8I GCNNGC 3 cut(s) 587, 618, 937
BstDEI CTNAG 3 cut(s) 35, 310, 406
BstDSI CCRYGG 1 cut(s) 105
BstENI CCTNNNNNAGG 1 cut(s) 497
BstKTI GATC 4 cut(s) 70, 164, 169, 856
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 4 cut(s) 67, 161, 166, 853
BstMCI CGRYCG 1 cut(s) 562
BstMWI GCNNNNNNNGC 3 cut(s) 626, 761, 767
BstNSI RCATGY 1 cut(s) 917
BstSCI CCNGG 2 cut(s) 50, 646
BstSFI CTRYAG 2 cut(s) 762, 933
BstV1I GCAGC 6 cut(s) 600, 613, 748, 754, 776, 919
BstV2I GAAGAC 2 cut(s) 846, 888
BstXI CCANNNNNNTGG 1 cut(s) 106
BstZI CGGCCG 1 cut(s) 559
BsuRI GGCC 5 cut(s) 172, 183, 224, 282, 561
BtgI CCRYGG 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 831
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 3 cut(s) 288, 487, 903
Cac8I GCNNGC 3 cut(s) 587, 618, 937
CciI TCATGA 2 cut(s) 424, 721
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 73, 181
CseI GACGC 2 cut(s) 339, 608
Csp6I GTAC 3 cut(s) 7, 403, 464
CspAI ACCGGT 1 cut(s) 75
CviAII CATG 8 cut(s) 185, 258, 425, 722, 730, 749, 865, 914
CviQI GTAC 3 cut(s) 7, 403, 464
DdeI CTNAG 3 cut(s) 35, 310, 406
DpnI GATC 4 cut(s) 69, 163, 168, 855
DpnII GATC 4 cut(s) 67, 161, 166, 853
DraI TTTAAA 1 cut(s) 517
EaeI YGGCCR 2 cut(s) 170, 559
EagI CGGCCG 1 cut(s) 559
Eam1104I CTCTTC 2 cut(s) 408, 780
EarI CTCTTC 2 cut(s) 408, 780
EciI GGCGGA 1 cut(s) 866
EclXI CGGCCG 1 cut(s) 559
Eco147I AGGCCT 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 73
Eco52I CGGCCG 1 cut(s) 559
EcoNI CCTNNNNNAGG 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 648
FaeI CATG 8 cut(s) 188, 261, 428, 725, 733, 752, 868, 917
FaqI GGGAC 2 cut(s) 461, 924
FatI CATG 8 cut(s) 184, 257, 424, 721, 729, 748, 864, 913
Fnu4HI GCNGC 8 cut(s) 14, 48, 614, 627, 762, 765, 768, 933
FriOI GRGCYC 1 cut(s) 648
Fsp4HI GCNGC 8 cut(s) 14, 48, 614, 627, 762, 765, 768, 933
FspBI CTAG 3 cut(s) 152, 623, 683
GluI GCNGC 8 cut(s) 14, 48, 614, 627, 762, 765, 768, 933
GsuI CTGGAG 1 cut(s) 695
HaeIII GGCC 5 cut(s) 172, 183, 224, 282, 561
HapII CCGG 3 cut(s) 51, 76, 648
HgaI GACGC 2 cut(s) 339, 608
Hin1II CATG 8 cut(s) 188, 261, 428, 725, 733, 752, 868, 917
HindIII AAGCTT 1 cut(s) 571
HinfI GANTC 3 cut(s) 418, 485, 725
HpaII CCGG 3 cut(s) 51, 76, 648
HphI GGTGA 3 cut(s) 307, 806, 848
Hpy166II GTNNAC 3 cut(s) 7, 109, 253
Hpy188I TCNGA 5 cut(s) 67, 166, 409, 544, 643
Hpy188III TCNNGA 7 cut(s) 34, 71, 425, 523, 596, 674, 722
Hpy8I GTNNAC 3 cut(s) 7, 109, 253
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 2 cut(s) 775, 898
HpyCH4IV ACGT 2 cut(s) 401, 581
HpyCH4V TGCA 3 cut(s) 341, 764, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 626, 761, 767
HpyF3I CTNAG 3 cut(s) 35, 310, 406
HpySE526I ACGT 2 cut(s) 401, 581
Hsp92II CATG 8 cut(s) 188, 261, 428, 725, 733, 752, 868, 917
Kzo9I GATC 4 cut(s) 67, 161, 166, 853
LmnI GCTCC 2 cut(s) 752, 826
Lsp1109I GCAGC 6 cut(s) 600, 613, 748, 754, 776, 919
LweI GCATC 2 cut(s) 342, 649
MaeI CTAG 3 cut(s) 152, 623, 683
MaeII ACGT 2 cut(s) 401, 581
MaeIII GTNAC 3 cut(s) 313, 482, 794
MalI GATC 4 cut(s) 69, 163, 168, 855
MboI GATC 4 cut(s) 67, 161, 166, 853
MboII GAAGA 7 cut(s) 422, 425, 584, 797, 851, 862, 893
MhlI GDGCHC 2 cut(s) 648, 921
MluCI AATT 1 cut(s) 694
MlyI GAGTC 1 cut(s) 479
MnlI CCTC 8 cut(s) 125, 134, 172, 293, 449, 775, 817, 840
MseI TTAA 2 cut(s) 498, 516
MspA1I CMGCKG 2 cut(s) 761, 767
MspI CCGG 3 cut(s) 51, 76, 648
MspR9I CCNGG 2 cut(s) 52, 648
MwoI GCNNNNNNNGC 3 cut(s) 626, 761, 767
NciI CCSGG 2 cut(s) 52, 648
NdeII GATC 4 cut(s) 67, 161, 166, 853
NlaIII CATG 8 cut(s) 188, 261, 428, 725, 733, 752, 868, 917
NlaIV GGNNCC 2 cut(s) 64, 828
NmuCI GTSAC 3 cut(s) 313, 482, 794
NspI RCATGY 1 cut(s) 917
PagI TCATGA 2 cut(s) 424, 721
PceI AGGCCT 1 cut(s) 282
PciI ACATGT 1 cut(s) 913
PfeI GAWTC 2 cut(s) 418, 725
PinAI ACCGGT 1 cut(s) 75
PkrI GCNGC 8 cut(s) 15, 49, 615, 628, 763, 766, 769, 934
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
Ppu21I YACGTR 2 cut(s) 402, 582
PscI ACATGT 1 cut(s) 913
PspN4I GGNNCC 2 cut(s) 64, 828
PspPI GGNCC 2 cut(s) 73, 181
PstI CTGCAG 2 cut(s) 766, 937
PvuII CAGCTG 2 cut(s) 761, 767
RsaI GTAC 3 cut(s) 8, 404, 465
RsaNI GTAC 3 cut(s) 7, 403, 464
SaqAI TTAA 2 cut(s) 498, 516
SatI GCNGC 8 cut(s) 14, 48, 614, 627, 762, 765, 768, 933
Sau3AI GATC 4 cut(s) 67, 161, 166, 853
Sau96I GGNCC 2 cut(s) 73, 181
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 2 cut(s) 52, 648
SduI GDGCHC 2 cut(s) 648, 921
SfaNI GCATC 2 cut(s) 342, 649
SfcI CTRYAG 2 cut(s) 762, 933
SinI GGWCC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 1 cut(s) 694
SseBI AGGCCT 1 cut(s) 282
SsiI CCGC 4 cut(s) 14, 48, 567, 851
SspMI CTAG 3 cut(s) 152, 623, 683
StuI AGGCCT 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 50, 646
TaaI ACNGT 2 cut(s) 775, 898
TaiI ACGT 2 cut(s) 404, 584
TaqI TCGA 2 cut(s) 213, 832
TasI AATT 1 cut(s) 694
TatI WGTACW 1 cut(s) 6
TauI GCSGC 2 cut(s) 16, 50
TfiI GAWTC 2 cut(s) 418, 725
Tru1I TTAA 2 cut(s) 498, 516
Tru9I TTAA 2 cut(s) 498, 516
TscAI CASTG 3 cut(s) 295, 487, 903
TseFI GTSAC 3 cut(s) 313, 482, 794
TseI GCWGC 6 cut(s) 613, 626, 761, 764, 767, 932
Tsp45I GTSAC 3 cut(s) 313, 482, 794
TspDTI ATGAA 9 cut(s) 405, 422, 564, 643, 710, 738, 759, 853, 862
TspGWI ACGGA 2 cut(s) 94, 174
TspRI CASTG 3 cut(s) 295, 487, 903
VpaK11BI GGWCC 1 cut(s) 73
XagI CCTNNNNNAGG 1 cut(s) 497
XapI RAATTY 1 cut(s) 694
XceI RCATGY 1 cut(s) 917
XspI CTAG 3 cut(s) 152, 623, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.