FvH4_3g09810

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000163
Physical Location & Seq
Reverse (-)
5722243 .. 5723447
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09810.t1

Sequence Viewer

Length: 1104 bp
ATGGATCCCGAAAACCCAATAGAACCTGCAAGCAAAAAACGAAAAACAACAACGGATCTCAAACAATGGATCACCAACCAAACCAACGTCGGGCTGGAGATCACAAAGCAACTCCTTCAAACCGAGTTCAAGAACACAAACATGGTATACTCGCCGCTATCCATCCACATCGTCTTGAGCATAGTAGCCGCCGGGAAACGTGGTTCCGATCTGGATGGGTTTCTTTCCTTTCTCAAGTCCAAGTCCGTCGACGACCTCAACTCCCTCGCCTACTATCTCACCACTTCCGTTCTAGCCGATCAATCGGCCAAAGGCGGGCCATGTTTGAACTTGGCCGTTGGTTTATGGGCAGACCAGTCTGAACCTCTTGACGATTCTTACAAAGAGGTGGTGTGCGAGTCTTACAAGGCTGCCCTAGAGCTAGTCGATTTCAAGGCCAACCCTGATAAAGTGAGAGTCGAAGTGAATTCATGGGTGGAGAAGATGACAAAAGGCCTCATCACTAATATTCTTTCTCCAAACGCAGTCACCAACCGAACAAGACGCATCTTTGCCAATGCTTTGTACTTCAAAGCCTCTTGGGATGAGCGATACAAGTTTTATGAACCATACACAAAGAAAGAGGATCATGAGTTTCACCTTCTCAATGGGGACTCAATAAAGGGAGTACCTTATATGACGAGCAATACAAGAGATGGGCTGCCAGCTCTGGCTGAGAAAGTTTGTTCAGAGCCCGGTTTTATAGATAGTCATCTTAGCAGTTTAAAGCTAGACTGGGTTGATGTGAGTGAATTCTTGATTCCAAAGTTTAAGTTTTCTTCGGCGTTTGAAACCTCTGGTATTCTGGAGAAACTAGGACTGGCGAATTTGTTAAACCCTCCTGTGAAAATATTTCATGAATCCTTGATTGAAGTTGATGAACATAGTACAACAGCTGCAGCTGCTACTGTTTATGAAGATTATTTAATGTGTTCAAGTGGTGATATTGTTGATGAGCCTCGAAGAAAAGAAGACTTTGTGGCAGATCACCCATTCATATTTGCCATCATGAAAGACAGTACAGTGCTGTTTATGGGACATGTTCTCAACCCCCTCGCAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

368

Amino Acids

41.02

Weight (kDa)

5.23

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 26 - 229 2.9e-36 Serpin (serine protease inhibitor)
Serpin PF00079 248 - 364 2.4e-16 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 34
AccI GTMKAC 2 cut(s) 147, 249
AciI CCGC 3 cut(s) 155, 189, 315
AclWI GGATC 4 cut(s) 12, 63, 77, 633
AcoI YGGCCR 2 cut(s) 306, 333
AcsI RAATTY 3 cut(s) 466, 791, 865
AfaI GTAC 4 cut(s) 566, 669, 928, 1060
AfiI CCNNNNNNNGG 3 cut(s) 90, 315, 1097
AflIII ACRYGT 1 cut(s) 1078
AgsI TTSAA 8 cut(s) 119, 130, 328, 433, 571, 830, 911, 975
AloI GAACNNNNNNTCC 2 cut(s) 187, 219
AluBI AGCT 5 cut(s) 421, 707, 769, 935, 941
AluI AGCT 5 cut(s) 421, 707, 769, 935, 941
AlwI GGATC 4 cut(s) 12, 63, 77, 633
AoxI GGCC 5 cut(s) 306, 317, 333, 435, 493
ApeKI GCWGC 5 cut(s) 410, 700, 935, 938, 941
ApoI RAATTY 3 cut(s) 466, 791, 865
AspS9I GGNCC 1 cut(s) 317
AsuC2I CCSGG 2 cut(s) 193, 735
AsuHPI GGTGA 6 cut(s) 64, 271, 520, 629, 992, 1019
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 735
BbsI GAAGAC 1 cut(s) 1017
BbvI GCAGC 5 cut(s) 397, 687, 922, 928, 950
BccI CCATC 4 cut(s) 170, 209, 689, 1052
BceAI ACGGC 1 cut(s) 320
BcnI CCSGG 2 cut(s) 193, 735
BfaI CTAG 5 cut(s) 293, 416, 422, 770, 854
BfmI CTRYAG 1 cut(s) 936
BfuAI ACCTGC 1 cut(s) 34
BisI GCNGC 7 cut(s) 155, 189, 411, 701, 936, 939, 942
BlsI GCNGC 7 cut(s) 156, 190, 412, 702, 937, 940, 943
Bme1390I CCNGG 2 cut(s) 193, 735
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 2 cut(s) 6, 205
BmrFI CCNGG 2 cut(s) 193, 735
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 1 cut(s) 555
BmuI ACTGGG 1 cut(s) 784
BpiI GAAGAC 1 cut(s) 1017
BpmI CTGGAG 2 cut(s) 116, 866
BpuEI CTTGAG 2 cut(s) 196, 218
BpuMI CCSGG 2 cut(s) 193, 735
BsaBI GATNNNNATC 1 cut(s) 750
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 315, 1097
Bse1I ACTGG 3 cut(s) 355, 779, 864
Bse8I GATNNNNATC 1 cut(s) 750
BseGI GGATG 3 cut(s) 162, 220, 589
BseJI GATNNNNATC 1 cut(s) 750
BseLI CCNNNNNNNGG 3 cut(s) 90, 315, 1097
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 3 cut(s) 355, 779, 864
BseXI GCAGC 5 cut(s) 397, 687, 922, 928, 950
BshFI GGCC 5 cut(s) 308, 319, 335, 437, 495
BsiSI CCGG 2 cut(s) 192, 735
BslFI GGGAC 2 cut(s) 665, 1089
BslI CCNNNNNNNGG 3 cut(s) 90, 315, 1097
BsmFI GGGAC 2 cut(s) 665, 1089
BsnI GGCC 5 cut(s) 308, 319, 335, 437, 495
Bsp1286I GDGCHC 1 cut(s) 735
Bsp143I GATC 8 cut(s) 4, 55, 69, 99, 208, 298, 625, 1024
BspACI CCGC 3 cut(s) 155, 189, 315
BspANI GGCC 5 cut(s) 308, 319, 335, 437, 495
BspCNI CTCAG 1 cut(s) 706
BspHI TCATGA 3 cut(s) 628, 895, 1047
BspLI GGNNCC 2 cut(s) 6, 205
BspMAI CTGCAG 1 cut(s) 940
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 4 cut(s) 12, 63, 77, 633
BsrI ACTGG 3 cut(s) 355, 779, 864
BssMI GATC 8 cut(s) 4, 55, 69, 99, 208, 298, 625, 1024
BssNAI GTATAC 1 cut(s) 148
Bst1107I GTATAC 1 cut(s) 148
Bst4CI ACNGT 3 cut(s) 949, 1058, 1063
BstC8I GCNNGC 4 cut(s) 31, 317, 705, 1099
BstDEI CTNAG 2 cut(s) 714, 755
BstF5I GGATG 3 cut(s) 162, 220, 589
BstKTI GATC 8 cut(s) 7, 58, 72, 102, 211, 301, 628, 1027
BstMBI GATC 8 cut(s) 4, 55, 69, 99, 208, 298, 625, 1024
BstMWI GCNNNNNNNGC 1 cut(s) 941
BstNSI RCATGY 1 cut(s) 1082
BstSCI CCNGG 2 cut(s) 191, 733
BstSFI CTRYAG 1 cut(s) 936
BstV1I GCAGC 5 cut(s) 397, 687, 922, 928, 950
BstV2I GAAGAC 1 cut(s) 1017
BstX2I RGATCY 2 cut(s) 4, 55
BstYI RGATCY 2 cut(s) 4, 55
BstZ17I GTATAC 1 cut(s) 148
BsuRI GGCC 5 cut(s) 308, 319, 335, 437, 495
BtsCI GGATG 3 cut(s) 162, 220, 589
BtsIMutI CAGTG 1 cut(s) 1068
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 4 cut(s) 31, 317, 705, 1099
CciI TCATGA 3 cut(s) 628, 895, 1047
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 1 cut(s) 552
Csp6I GTAC 4 cut(s) 565, 668, 927, 1059
CviAII CATG 7 cut(s) 142, 321, 471, 629, 896, 1048, 1079
CviQI GTAC 4 cut(s) 565, 668, 927, 1059
DdeI CTNAG 2 cut(s) 714, 755
DpnI GATC 8 cut(s) 6, 57, 71, 101, 210, 300, 627, 1026
DpnII GATC 8 cut(s) 4, 55, 69, 99, 208, 298, 625, 1024
DraI TTTAAA 1 cut(s) 765
EaeI YGGCCR 2 cut(s) 306, 333
Eco147I AGGCCT 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 735
EcoRI GAATTC 2 cut(s) 466, 791
EcoT38I GRGCYC 1 cut(s) 735
FaeI CATG 7 cut(s) 145, 324, 474, 632, 899, 1051, 1082
FaqI GGGAC 2 cut(s) 665, 1089
FatI CATG 7 cut(s) 141, 320, 470, 628, 895, 1047, 1078
FauI CCCGC 1 cut(s) 308
FblI GTMKAC 2 cut(s) 147, 249
Fnu4HI GCNGC 7 cut(s) 155, 189, 411, 701, 936, 939, 942
FokI GGATG 3 cut(s) 149, 227, 596
FriOI GRGCYC 1 cut(s) 735
Fsp4HI GCNGC 7 cut(s) 155, 189, 411, 701, 936, 939, 942
FspBI CTAG 5 cut(s) 293, 416, 422, 770, 854
GluI GCNGC 7 cut(s) 155, 189, 411, 701, 936, 939, 942
GsuI CTGGAG 2 cut(s) 116, 866
HaeIII GGCC 5 cut(s) 308, 319, 335, 437, 495
HapII CCGG 2 cut(s) 192, 735
HgaI GACGC 1 cut(s) 552
Hin1II CATG 7 cut(s) 145, 324, 474, 632, 899, 1051, 1082
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 6 cut(s) 374, 398, 456, 653, 799, 899
HpaII CCGG 2 cut(s) 192, 735
HphI GGTGA 6 cut(s) 64, 271, 520, 629, 992, 1019
Hpy166II GTNNAC 2 cut(s) 148, 250
Hpy188I TCNGA 3 cut(s) 208, 361, 730
Hpy8I GTNNAC 2 cut(s) 148, 250
Hpy99I CGWCG 3 cut(s) 92, 251, 254
HpyAV CCTTC 2 cut(s) 125, 650
HpyCH4III ACNGT 3 cut(s) 949, 1058, 1063
HpyCH4IV ACGT 2 cut(s) 87, 199
HpyCH4V TGCA 2 cut(s) 29, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 941
HpyF3I CTNAG 2 cut(s) 714, 755
HpySE526I ACGT 2 cut(s) 87, 199
Hsp92II CATG 7 cut(s) 145, 324, 474, 632, 899, 1051, 1082
Kzo9I GATC 8 cut(s) 4, 55, 69, 99, 208, 298, 625, 1024
Lsp1109I GCAGC 5 cut(s) 397, 687, 922, 928, 950
LweI GCATC 1 cut(s) 555
MaeI CTAG 5 cut(s) 293, 416, 422, 770, 854
MaeII ACGT 2 cut(s) 87, 199
MaeIII GTNAC 1 cut(s) 526
MalI GATC 8 cut(s) 6, 57, 71, 101, 210, 300, 627, 1026
MboI GATC 8 cut(s) 4, 55, 69, 99, 208, 298, 625, 1024
MboII GAAGA 5 cut(s) 493, 810, 968, 1014, 1022
MflI RGATCY 2 cut(s) 4, 55
MhlI GDGCHC 1 cut(s) 735
MluCI AATT 3 cut(s) 466, 791, 865
MlyI GAGTC 3 cut(s) 407, 465, 647
MseI TTAA 4 cut(s) 764, 810, 872, 965
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 935, 941
MspI CCGG 2 cut(s) 192, 735
MspR9I CCNGG 2 cut(s) 193, 735
MwoI GCNNNNNNNGC 1 cut(s) 941
NciI CCSGG 2 cut(s) 193, 735
NdeII GATC 8 cut(s) 4, 55, 69, 99, 208, 298, 625, 1024
NlaIII CATG 7 cut(s) 145, 324, 474, 632, 899, 1051, 1082
NlaIV GGNNCC 2 cut(s) 6, 205
NmuCI GTSAC 1 cut(s) 526
NspI RCATGY 1 cut(s) 1082
PagI TCATGA 3 cut(s) 628, 895, 1047
PceI AGGCCT 1 cut(s) 495
PciI ACATGT 1 cut(s) 1078
PfeI GAWTC 3 cut(s) 374, 799, 899
PkrI GCNGC 7 cut(s) 156, 190, 412, 702, 937, 940, 943
PleI GAGTC 3 cut(s) 406, 464, 647
PpsI GAGTC 3 cut(s) 406, 464, 647
PscI ACATGT 1 cut(s) 1078
PspN4I GGNNCC 2 cut(s) 6, 205
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 940
PsuI RGATCY 2 cut(s) 4, 55
PvuII CAGCTG 2 cut(s) 935, 941
RsaI GTAC 4 cut(s) 566, 669, 928, 1060
RsaNI GTAC 4 cut(s) 565, 668, 927, 1059
RseI CAYNNNNRTG 1 cut(s) 140
SalI GTCGAC 1 cut(s) 248
SaqAI TTAA 4 cut(s) 764, 810, 872, 965
SatI GCNGC 7 cut(s) 155, 189, 411, 701, 936, 939, 942
Sau3AI GATC 8 cut(s) 4, 55, 69, 99, 208, 298, 625, 1024
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 3 cut(s) 407, 465, 647
ScrFI CCNGG 2 cut(s) 193, 735
SduI GDGCHC 1 cut(s) 735
SfaNI GCATC 1 cut(s) 555
SfcI CTRYAG 1 cut(s) 936
SgrDI CGTCGACG 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 2 cut(s) 175, 233
SmoI CTYRAG 2 cut(s) 175, 233
Sse9I AATT 3 cut(s) 466, 791, 865
SseBI AGGCCT 1 cut(s) 495
SsiI CCGC 3 cut(s) 155, 189, 315
SspI AATATT 2 cut(s) 508, 891
SspMI CTAG 5 cut(s) 293, 416, 422, 770, 854
StuI AGGCCT 1 cut(s) 495
StyD4I CCNGG 2 cut(s) 191, 733
TaaI ACNGT 3 cut(s) 949, 1058, 1063
TaiI ACGT 2 cut(s) 90, 202
TaqI TCGA 4 cut(s) 249, 426, 459, 1000
TasI AATT 3 cut(s) 466, 791, 865
TatI WGTACW 3 cut(s) 564, 926, 1058
TauI GCSGC 2 cut(s) 157, 191
TfiI GAWTC 3 cut(s) 374, 799, 899
Tru1I TTAA 4 cut(s) 764, 810, 872, 965
Tru9I TTAA 4 cut(s) 764, 810, 872, 965
TscAI CASTG 1 cut(s) 1068
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 5 cut(s) 410, 700, 935, 938, 941
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 8 cut(s) 459, 618, 884, 912, 933, 969, 1024, 1064
TspGWI ACGGA 3 cut(s) 68, 235, 277
TspRI CASTG 1 cut(s) 1068
XapI RAATTY 3 cut(s) 466, 791, 865
XceI RCATGY 1 cut(s) 1082
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XmiI GTMKAC 2 cut(s) 147, 249
XspI CTAG 5 cut(s) 293, 416, 422, 770, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.