Rmu_sc0005082.1_g000007

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005082.1
OG0000163
Physical Location & Seq
Reverse (-)
16070 .. 18020
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005082.1_g000007.1.cds

Sequence Viewer

Length: 657 bp
atgttgtggttacttccggatgcaagagatgggctgccggctctgactaagagacgtttgttccgagtccgactttctagaccgccggccgtctttatagttttacgtacgactgttagagtgaagaaattcttgattccaaagttcaagatttcatccgggtttgaagcttcgggtgttctgaagaaattaggctgggggacgtttcaagaaaatttgcacatcagacgagcacggtcgatttcggcgaccgggcttctggttgatttcggctttctgcgaccgggcttctggttgatttcggcgacctgggctttccggtctgcggcgacgattgcagaaacagcatccactcctgaagacgacaaagcagatttggtcagcctacctcgccggagtccaacaccggaaattaggctgggggacggttgtgatttaatggcgatatttcacgaatctataatagacgttgataaaaatggcacaacagctgcagctgctacttgtgctcaaatgtggcttagcgatggtaacttctccaaacctaaagagatagaagaatttgtggctgaccaccccttcatgtttctcataagggaaaacagaaccagaacggtgttgttcatggggcaggtgctcattcctcttgcaggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

218

Amino Acids

24.36

Weight (kDa)

9.93

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 622
Acc36I ACCTGC 1 cut(s) 622
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 2 cut(s) 83, 326
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 3 cut(s) 128, 214, 560
AcuI CTGAAG 2 cut(s) 203, 378
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 2 cut(s) 325, 650
AgsI TTSAA 3 cut(s) 148, 167, 209
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 3 cut(s) 170, 491, 497
AluI AGCT 3 cut(s) 170, 491, 497
Alw21I GWGCWC 3 cut(s) 235, 511, 639
Alw26I GTCTC 1 cut(s) 46
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 4 cut(s) 34, 491, 494, 497
ApoI RAATTY 3 cut(s) 128, 214, 560
Asp700I GAANNNNTTC 1 cut(s) 128
AsuC2I CCSGG 3 cut(s) 160, 253, 285
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 3 cut(s) 235, 511, 639
BbvI GCAGC 4 cut(s) 21, 478, 484, 506
BccI CCATC 2 cut(s) 23, 521
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 310
BcnI CCSGG 3 cut(s) 160, 253, 285
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 622
BisI GCNGC 5 cut(s) 35, 327, 492, 495, 498
BlpI GCTNAGC 1 cut(s) 521
BlsI GCNGC 5 cut(s) 36, 328, 493, 496, 499
Bme1390I CCNGG 4 cut(s) 160, 253, 285, 310
BmrFI CCNGG 4 cut(s) 160, 253, 285, 310
BmsI GCATC 2 cut(s) 10, 356
BpiI GAAGAC 1 cut(s) 366
Bpu1102I GCTNAGC 1 cut(s) 521
BpuMI CCSGG 3 cut(s) 160, 253, 285
BsaAI YACGTR 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 309
BsaWI WCCGGW 3 cut(s) 16, 318, 406
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 650
Bse118I RCCGGY 2 cut(s) 37, 85
BseAI TCCGGA 1 cut(s) 16
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 3 cut(s) 25, 155, 347
BseLI CCNNNNNNNGG 2 cut(s) 325, 650
BseX3I CGGCCG 1 cut(s) 87
BseXI GCAGC 4 cut(s) 21, 478, 484, 506
BseYI CCCAGC 2 cut(s) 195, 418
Bsh1285I CGRYCG 4 cut(s) 90, 239, 252, 284
BshFI GGCC 1 cut(s) 89
BsiEI CGRYCG 4 cut(s) 90, 239, 252, 284
BsiHKAI GWGCWC 3 cut(s) 235, 511, 639
BsiSI CCGG 9 cut(s) 17, 38, 86, 159, 252, 284, 319, 394, 407
BsiWI CGTACG 1 cut(s) 107
BslFI GGGAC 2 cut(s) 214, 437
BslI CCNNNNNNNGG 2 cut(s) 325, 650
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 2 cut(s) 214, 437
BsnI GGCC 1 cut(s) 89
Bsp1286I GDGCHC 3 cut(s) 235, 511, 639
Bsp13I TCCGGA 1 cut(s) 16
Bsp1720I GCTNAGC 1 cut(s) 521
BspACI CCGC 2 cut(s) 83, 326
BspANI GGCC 1 cut(s) 89
BspEI TCCGGA 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 496
BspMI ACCTGC 1 cut(s) 622
BsrFI RCCGGY 2 cut(s) 37, 85
BssAI RCCGGY 2 cut(s) 37, 85
BssECI CCNNGG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 4 cut(s) 115, 237, 428, 616
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 39, 87, 652
BstDEI CTNAG 2 cut(s) 48, 521
BstENI CCTNNNNNAGG 1 cut(s) 648
BstF5I GGATG 3 cut(s) 25, 155, 347
BstMAI GTCTC 1 cut(s) 46
BstMCI CGRYCG 4 cut(s) 90, 239, 252, 284
BstMWI GCNNNNNNNGC 6 cut(s) 311, 335, 344, 390, 497, 506
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 4 cut(s) 158, 251, 283, 308
BstSFI CTRYAG 1 cut(s) 492
BstSNI TACGTA 1 cut(s) 107
BstV1I GCAGC 4 cut(s) 21, 478, 484, 506
BstV2I GAAGAC 1 cut(s) 366
BstZI CGGCCG 1 cut(s) 87
BsuRI GGCC 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 3 cut(s) 25, 155, 347
BveI ACCTGC 1 cut(s) 622
Cac8I GCNNGC 3 cut(s) 39, 87, 652
Cfr10I RCCGGY 2 cut(s) 37, 85
Csp6I GTAC 1 cut(s) 108
CviAII CATG 2 cut(s) 583, 625
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 2 cut(s) 48, 521
EaeI YGGCCR 1 cut(s) 87
EagI CGGCCG 1 cut(s) 87
EclXI CGGCCG 1 cut(s) 87
Eco105I TACGTA 1 cut(s) 107
Eco52I CGGCCG 1 cut(s) 87
Eco57I CTGAAG 2 cut(s) 203, 378
EcoNI CCTNNNNNAGG 1 cut(s) 648
EcoRII CCWGG 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 2 cut(s) 586, 628
FaiI YATR 5 cut(s) 98, 461, 584, 593, 626
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 2 cut(s) 214, 437
FatI CATG 2 cut(s) 582, 624
Fnu4HI GCNGC 5 cut(s) 35, 327, 492, 495, 498
FokI GGATG 3 cut(s) 32, 142, 334
Fsp4HI GCNGC 5 cut(s) 35, 327, 492, 495, 498
FspBI CTAG 1 cut(s) 78
GluI GCNGC 5 cut(s) 35, 327, 492, 495, 498
GsaI CCCAGC 2 cut(s) 199, 422
HaeIII GGCC 1 cut(s) 89
HapII CCGG 9 cut(s) 17, 38, 86, 159, 252, 284, 319, 394, 407
Hin1II CATG 2 cut(s) 586, 628
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 4 cut(s) 66, 136, 397, 455
HpaII CCGG 9 cut(s) 17, 38, 86, 159, 252, 284, 319, 394, 407
Hpy188I TCNGA 5 cut(s) 45, 65, 71, 183, 227
Hpy188III TCNNGA 7 cut(s) 17, 78, 133, 148, 209, 356, 452
Hpy99I CGWCG 1 cut(s) 334
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 4 cut(s) 115, 237, 428, 616
HpyCH4IV ACGT 4 cut(s) 55, 106, 203, 468
HpyCH4V TGCA 5 cut(s) 23, 220, 338, 494, 650
HpyF10VI GCNNNNNNNGC 6 cut(s) 311, 335, 344, 390, 497, 506
HpyF3I CTNAG 2 cut(s) 48, 521
HpySE526I ACGT 4 cut(s) 55, 106, 203, 468
Hsp92II CATG 2 cut(s) 586, 628
Kpn2I TCCGGA 1 cut(s) 16
KroI GCCGGC 2 cut(s) 37, 85
KroNI GCCGGC 2 cut(s) 39, 87
Lsp1109I GCAGC 4 cut(s) 21, 478, 484, 506
LweI GCATC 2 cut(s) 10, 356
MaeI CTAG 1 cut(s) 78
MaeII ACGT 4 cut(s) 55, 106, 203, 468
MaeIII GTNAC 2 cut(s) 9, 530
MboII GAAGA 4 cut(s) 136, 196, 371, 569
MhlI GDGCHC 3 cut(s) 235, 511, 639
MluCI AATT 5 cut(s) 128, 188, 214, 411, 560
MlyI GAGTC 2 cut(s) 75, 406
MmeI TCCRAC 2 cut(s) 94, 425
MnlI CCTC 2 cut(s) 399, 654
MroI TCCGGA 1 cut(s) 16
MroNI GCCGGC 2 cut(s) 37, 85
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 437
MspA1I CMGCKG 2 cut(s) 491, 497
MspI CCGG 9 cut(s) 17, 38, 86, 159, 252, 284, 319, 394, 407
MspR9I CCNGG 4 cut(s) 160, 253, 285, 310
MvaI CCWGG 1 cut(s) 310
MwoI GCNNNNNNNGC 6 cut(s) 311, 335, 344, 390, 497, 506
NaeI GCCGGC 2 cut(s) 39, 87
NciI CCSGG 3 cut(s) 160, 253, 285
NgoMIV GCCGGC 2 cut(s) 37, 85
NlaIII CATG 2 cut(s) 586, 628
PaqCI CACCTGC 1 cut(s) 622
PcsI WCGNNNNNNNCGW 2 cut(s) 61, 245
PdiI GCCGGC 2 cut(s) 39, 87
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 136, 455
Pfl23II CGTACG 1 cut(s) 107
PkrI GCNGC 5 cut(s) 36, 328, 493, 496, 499
PleI GAGTC 2 cut(s) 74, 405
PpsI GAGTC 2 cut(s) 74, 405
Ppu21I YACGTR 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 308
PspFI CCCAGC 2 cut(s) 195, 418
PspGI CCWGG 1 cut(s) 308
PspLI CGTACG 1 cut(s) 107
PstI CTGCAG 1 cut(s) 496
PvuII CAGCTG 2 cut(s) 491, 497
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 5 cut(s) 35, 327, 492, 495, 498
SchI GAGTC 2 cut(s) 75, 406
ScrFI CCNGG 4 cut(s) 160, 253, 285, 310
SduI GDGCHC 3 cut(s) 235, 511, 639
SfaNI GCATC 2 cut(s) 10, 356
SfcI CTRYAG 1 cut(s) 492
SnaBI TACGTA 1 cut(s) 107
Sse9I AATT 5 cut(s) 128, 188, 214, 411, 560
SsiI CCGC 2 cut(s) 83, 326
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 4 cut(s) 158, 251, 283, 308
TaaI ACNGT 4 cut(s) 115, 237, 428, 616
TaiI ACGT 4 cut(s) 58, 109, 206, 471
TaqI TCGA 1 cut(s) 239
TasI AATT 5 cut(s) 128, 188, 214, 411, 560
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 2 cut(s) 136, 455
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TseI GCWGC 4 cut(s) 34, 491, 494, 497
TspDTI ATGAA 3 cut(s) 144, 571, 613
XagI CCTNNNNNAGG 1 cut(s) 648
XapI RAATTY 3 cut(s) 128, 214, 560
XbaI TCTAGA 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.