RchiOBHm_Chr5g0015521

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000163
Physical Location & Seq
Reverse (-)
10771769 .. 10772215
447 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29594

Sequence Viewer

Length: 447 bp
ATGTCCTTCGACCACCTTAACTCCGTAGCCTACCATCTCATCACTTCCGTTCTAGCCGATGGATCGGCCAAAGGCGGGTCATGTTTGAACTTGGCCAACGGTTTATGGACAGACGAGTCTAAACCTCTTGAGGATTCTTACCAAGAGGTGGTGTGCGAGTCTTACAAGGCTTCCCTAAAGCAAGTAGATTTCAAGGCCAACCCCGGTAAAGTGAGAGTTGAAGTTAATTCATGGGAGAAGAAGGAGACAAAAGGCCTTATCACTGAGATTCTTCCTCTAAACTCAGTCACCAACGAAACAGGACGCATCTTTGCAAATGCTTTATACTTCAATGCCTCTTGGAGAGAGAGCTACCGCTTCCATGAACCCTACACAAAAGAGAAGGATCATGAGTTCCACCTTCTCAATGGGGACTCGGTCAAGGGAGTACCTTTTATGACGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

148

Amino Acids

16.68

Weight (kDa)

5.72

Isoelectric Point (pI)

25.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 12 - 147 5.7e-24 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 115
AccB7I CCANNNNNTGG 1 cut(s) 148
AciI CCGC 2 cut(s) 75, 355
AclWI GGATC 2 cut(s) 70, 393
AcoI YGGCCR 2 cut(s) 66, 93
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 2 cut(s) 75, 148
AgsI TTSAA 4 cut(s) 88, 193, 221, 331
AloI GAACNNNNNNTCC 2 cut(s) 377, 409
AluBI AGCT 1 cut(s) 351
AluI AGCT 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 2 cut(s) 70, 393
AoxI GGCC 4 cut(s) 66, 93, 195, 253
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 280
BalI TGGCCA 1 cut(s) 95
BccI CCATC 2 cut(s) 42, 53
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 148
BseDI CCNNGG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 75, 148
BseMII CTCAG 2 cut(s) 255, 297
BshFI GGCC 4 cut(s) 68, 95, 197, 255
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 75, 148
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 4 cut(s) 68, 95, 197, 255
Bsp143I GATC 2 cut(s) 62, 385
BspACI CCGC 2 cut(s) 75, 355
BspANI GGCC 4 cut(s) 68, 95, 197, 255
BspCNI CTCAG 2 cut(s) 256, 296
BspHI TCATGA 1 cut(s) 388
BspPI GGATC 2 cut(s) 70, 393
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 2 cut(s) 62, 385
Bst4CI ACNGT 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 264, 283
BstKTI GATC 2 cut(s) 65, 388
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 2 cut(s) 62, 385
BstSCI CCNGG 1 cut(s) 202
BsuRI GGCC 4 cut(s) 68, 95, 197, 255
BtsIMutI CAGTG 1 cut(s) 261
CciI TCATGA 1 cut(s) 388
CseI GACGC 1 cut(s) 312
Csp6I GTAC 1 cut(s) 428
CviAII CATG 4 cut(s) 81, 231, 362, 389
CviJI RGCY 8 cut(s) 29, 56, 68, 95, 170, 197, 255, 351
CviKI_1 RGCY 8 cut(s) 29, 56, 68, 95, 170, 197, 255, 351
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 2 cut(s) 264, 283
DpnI GATC 2 cut(s) 64, 387
DpnII GATC 2 cut(s) 62, 385
DrdI GACNNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 2 cut(s) 66, 93
Eco147I AGGCCT 1 cut(s) 255
FaeI CATG 4 cut(s) 84, 234, 365, 392
FaiI YATR 7 cut(s) 82, 106, 232, 325, 363, 390, 437
FaqI GGGAC 1 cut(s) 425
FatI CATG 4 cut(s) 80, 230, 361, 388
FauI CCCGC 1 cut(s) 68
FspBI CTAG 1 cut(s) 53
HaeIII GGCC 4 cut(s) 68, 95, 197, 255
HapII CCGG 1 cut(s) 204
HgaI GACGC 1 cut(s) 312
Hin1II CATG 4 cut(s) 84, 234, 365, 392
HinfI GANTC 5 cut(s) 116, 134, 158, 268, 413
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 280
Hpy188III TCNNGA 2 cut(s) 128, 389
HpyAV CCTTC 4 cut(s) 16, 235, 376, 410
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 264, 283
Hsp92II CATG 4 cut(s) 84, 234, 365, 392
Kzo9I GATC 2 cut(s) 62, 385
LpnPI CCDG 2 cut(s) 217, 285
LweI GCATC 1 cut(s) 315
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 64, 387
MboI GATC 2 cut(s) 62, 385
MboII GAAGA 2 cut(s) 250, 263
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 1 cut(s) 226
MluNI TGGCCA 1 cut(s) 95
MlyI GAGTC 3 cut(s) 125, 167, 407
MnlI CCTC 5 cut(s) 124, 135, 139, 285, 346
Mox20I TGGCCA 1 cut(s) 95
MscI TGGCCA 1 cut(s) 95
MseI TTAA 2 cut(s) 18, 225
Msp20I TGGCCA 1 cut(s) 95
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 204
NciI CCSGG 1 cut(s) 204
NdeII GATC 2 cut(s) 62, 385
NlaIII CATG 4 cut(s) 84, 234, 365, 392
NmuCI GTSAC 1 cut(s) 286
PagI TCATGA 1 cut(s) 388
PceI AGGCCT 1 cut(s) 255
PfeI GAWTC 2 cut(s) 134, 268
PflFI GACNNNGTC 1 cut(s) 416
PflMI CCANNNNNTGG 1 cut(s) 148
PleI GAGTC 3 cut(s) 124, 166, 407
PpsI GAGTC 3 cut(s) 124, 166, 407
PsyI GACNNNGTC 1 cut(s) 416
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
SaqAI TTAA 2 cut(s) 18, 225
Sau3AI GATC 2 cut(s) 62, 385
SchI GAGTC 3 cut(s) 125, 167, 407
ScrFI CCNGG 1 cut(s) 204
SetI ASST 6 cut(s) 18, 127, 150, 353, 402, 433
SfaNI GCATC 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 1 cut(s) 226
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 2 cut(s) 75, 355
SspMI CTAG 1 cut(s) 53
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 9
TaqII GACCGA 1 cut(s) 406
TasI AATT 1 cut(s) 226
TfiI GAWTC 2 cut(s) 134, 268
Tru1I TTAA 2 cut(s) 18, 225
Tru9I TTAA 2 cut(s) 18, 225
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 219, 378
TspGWI ACGGA 2 cut(s) 13, 37
TspRI CASTG 1 cut(s) 268
Tth111I GACNNNGTC 1 cut(s) 416
Van91I CCANNNNNTGG 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.