Rroxscaffold_6G00424480

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000163
Physical Location & Seq
Reverse (-)
45608627 .. 45610366
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00424480.1

Sequence Viewer

Length: 333 bp
ATGGTTGCAGGCGTGTTAGGGTCGGGAAATTCTTGTTCCCAAAGTTTAAGGTGTCGATCTTCCGGGTTTGAAGCTTCGAGTGCTACGAAGAAACTAGGACTGGGTTGTGATTTAATGGCCATATTTCATGAGGCTGTAATAGAGGTCGATGAAAATGGCACAACAGCTGCAGCTGCTACTTGTGCTCGTAGGTATTTTGGCGATGGTGAGGTCTGTAAGCCTGAAGAGGAAGAAGACTTTGTGGCTGATCACACCTTCATGTTTCTCACAAGGGAAGACCTGACCGGAACGGTCATGTTCATGGGGCAGTTGCTCAATCCTCTTGCAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

110

Amino Acids

11.69

Weight (kDa)

4.54

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 38 - 107 1e-15 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 3 cut(s) 74, 167, 173
AluI AGCT 3 cut(s) 74, 167, 173
Alw21I GWGCWC 1 cut(s) 187
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 3 cut(s) 167, 170, 173
ApoI RAATTY 1 cut(s) 28
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 218
BalI TGGCCA 1 cut(s) 119
BbsI GAAGAC 2 cut(s) 240, 282
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 3 cut(s) 154, 160, 182
BccI CCATC 1 cut(s) 197
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 1 cut(s) 64
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 3 cut(s) 168, 171, 174
BlsI GCNGC 3 cut(s) 169, 172, 175
Bme1390I CCNGG 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 110
BmuI ACTGGG 1 cut(s) 110
BpiI GAAGAC 2 cut(s) 240, 282
BpuMI CCSGG 1 cut(s) 64
BsaWI WCCGGW 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 3 cut(s) 154, 160, 182
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 2 cut(s) 63, 285
BslI CCNNNNNNNGG 1 cut(s) 326
BsnI GGCC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 56, 247
BspANI GGCC 1 cut(s) 119
BspHI TCATGA 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 172
BsrI ACTGG 1 cut(s) 105
BssMI GATC 2 cut(s) 56, 247
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 10, 328
BstENI CCTNNNNNAGG 1 cut(s) 324
BstKTI GATC 2 cut(s) 59, 250
BstMBI GATC 2 cut(s) 56, 247
BstMWI GCNNNNNNNGC 3 cut(s) 80, 173, 182
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 154, 160, 182
BstV2I GAAGAC 2 cut(s) 240, 282
BsuRI GGCC 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 10, 328
CciI TCATGA 1 cut(s) 127
CviAII CATG 4 cut(s) 128, 259, 295, 301
CviJI RGCY 8 cut(s) 74, 119, 134, 167, 173, 220, 245, 330
CviKI_1 RGCY 8 cut(s) 74, 119, 134, 167, 173, 220, 245, 330
DpnI GATC 2 cut(s) 58, 249
DpnII GATC 2 cut(s) 56, 247
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 243
EcoNI CCTNNNNNAGG 1 cut(s) 324
FaeI CATG 4 cut(s) 131, 262, 298, 304
FaiI YATR 5 cut(s) 122, 129, 260, 296, 302
FatI CATG 4 cut(s) 127, 258, 294, 300
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 168, 171, 174
Fsp4HI GCNGC 3 cut(s) 168, 171, 174
FspBI CTAG 1 cut(s) 95
GluI GCNGC 3 cut(s) 168, 171, 174
HaeIII GGCC 1 cut(s) 119
HapII CCGG 2 cut(s) 63, 285
Hin1II CATG 4 cut(s) 131, 262, 298, 304
HindIII AAGCTT 1 cut(s) 72
HpaII CCGG 2 cut(s) 63, 285
HphI GGTGA 1 cut(s) 218
Hpy188III TCNNGA 2 cut(s) 24, 128
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 3 cut(s) 8, 170, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 173, 182
Hsp92II CATG 4 cut(s) 131, 262, 298, 304
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 56, 247
LpnPI CCDG 6 cut(s) 76, 86, 234, 293, 298, 312
Lsp1109I GCAGC 3 cut(s) 154, 160, 182
MaeI CTAG 1 cut(s) 95
MalI GATC 2 cut(s) 58, 249
MboI GATC 2 cut(s) 56, 247
MboII GAAGA 6 cut(s) 51, 100, 236, 242, 245, 287
MhlI GDGCHC 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 1 cut(s) 28
MluNI TGGCCA 1 cut(s) 119
MnlI CCTC 5 cut(s) 124, 136, 202, 220, 330
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
MseI TTAA 2 cut(s) 47, 113
MslI CAYNNNNRTG 2 cut(s) 257, 299
Msp20I TGGCCA 1 cut(s) 119
MspA1I CMGCKG 2 cut(s) 167, 173
MspI CCGG 2 cut(s) 63, 285
MspR9I CCNGG 1 cut(s) 64
MwoI GCNNNNNNNGC 3 cut(s) 80, 173, 182
NciI CCSGG 1 cut(s) 64
NdeII GATC 2 cut(s) 56, 247
NlaIII CATG 4 cut(s) 131, 262, 298, 304
PagI TCATGA 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PkrI GCNGC 3 cut(s) 169, 172, 175
PstI CTGCAG 1 cut(s) 172
PvuII CAGCTG 2 cut(s) 167, 173
RseI CAYNNNNRTG 2 cut(s) 257, 299
SaqAI TTAA 2 cut(s) 47, 113
SatI GCNGC 3 cut(s) 168, 171, 174
Sau3AI GATC 2 cut(s) 56, 247
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 1 cut(s) 187
SetI ASST 9 cut(s) 53, 76, 147, 169, 175, 194, 213, 257, 282
SfcI CTRYAG 1 cut(s) 168
SmiMI CAYNNNNRTG 2 cut(s) 257, 299
Sse9I AATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 3 cut(s) 55, 77, 147
TasI AATT 1 cut(s) 28
Tru1I TTAA 2 cut(s) 47, 113
Tru9I TTAA 2 cut(s) 47, 113
TseI GCWGC 3 cut(s) 167, 170, 173
TspDTI ATGAA 4 cut(s) 116, 165, 247, 289
XagI CCTNNNNNAGG 1 cut(s) 324
XapI RAATTY 1 cut(s) 28
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.