Rorug05G0384800

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000163
Physical Location & Seq
Forward (+)
52269934 .. 52276830
6897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0384800.1

Sequence Viewer

Length: 1971 bp
ATGTCTGGAAATGAGCACTGTTTCGTAGAATGGAAAGAACACTTTGTTTCACAGGAGAGGGGCAACCGTGTGGTTCATTATTTCTTGAAGGATTCTGGTGGAGAATCCATACTTGCAGTTATAGGTACGGAAAGGAGTGTTAGGCACATGTTCTATGTTGTTGCCGAGGAGTTTTTGCAAGTGCACGGAAAGGAAAACTCAGCTAATTCTAACTACAAATGGAGGTCGAGAAGGGAGGTCGTGGATTGGCTTACATCTATGCTGTCCAAGCAGCATTTACATGGAGATATGCTTGAGTCACTTCAACATGATTCATCACAAGCTTTAGGTACTCCCGAATATCCAACTAATGCAATTAGTGGTCCCCAGATCCAAGTTTCCAAATACTCGGGTCATCTTGCAAAGAACTTCAAGATGAACAGTCCAGACATTGTTTGGTCAGGTGTTTCATGGACATGTGGTAAACAGCTCAAGCATTTTCCTGCATTCTGTAGGAATGGGATTAAAATAGAGATTAAGTCCTTTGTATTCGTCATGGCAAAGGGAGAAAATCGGTATGTTGCTTATATGGAAGATATGTATGAAGACAAAAGGGGTCAAAAAAAGGTCAAAGTGAGGTGGTTTCACCGTAATCAGGAAGTTAAGGGGGTAATTCCTCTGCAAAATCCTCACCCGAAGGAAGTTTTCATCACGCCATATGTGCAGGTCATTAGTGCAGAGTGTGTTGATGGTCCTGCAACAGTTTTAACTCGTGAACATTATGAAAAGTGTGCACTTGTGTTTCCTCAGGCTTTATTGGCCAAAGTACATCTTTGCTACAGGCAGTTTAAAAGTAAAAGGGTGAAGCCATTTGATTTGAGTAAGATGCATGGCTATTTTGTTCAGCCGATTCTCTCTTATTTGAGTCCCAACTTTTTACCAAATTCAGAGTGTATAAGTGGTAGTCTGATTGGAAAAGAAGATAAGTTGGGCCCAAGTGACTATGTAAAGCTGGGAACTAAGAGGACTAGAAATGGAAGGCCATGCCAGAGGGTTCCAACTAATCAAAACTCAAACTTTGGTTTTCTGGACAGGAGGTTGCTTTCTTGGTATACCCCACTGTTTAAGGTTGATGAAAAGATAGAATTGCTATGCCAAGATAGTGGCATTCGGGGCTGCTGGTTTAGGTGTACAGTCTTGCAGACATCTCGAAAGCAGATTAGAGTCCAATACAATGATTTGCTAGATGAGGAAGGATGTGGCAATCTTGAGGAATGGATCCCTGCTTTTAGACTGGCTAAGCCTGATAAGATTGGCATGCGGCATCTAGGCCGTCCAATGATACGGCCAGCCCCTCCTGAGGTGCAAATGGACCTTCCTCTTGAGGTTGGAGCTGCAATTGATGCATGGTGGAGCGATGGCTGGTGGGAAGGGATTATAACTGGATTTGGCAGCTGTGATGATAATTTTCAAGTTTACTTTCCGGGGGAAAGCTTACTCTTGAACATGGACAAAAAGGATCTAAGAATATCTAGAGATTGGTTGGGGGACCAGTGGGTTGATATTGAGGCGAAGCCTGATGTCCTCTCAGCCATATCTTCAACAATTAGCTCTTGCACTAGGCCCTTTGTGTCATCCAACATTGCCAAGGATGTTGAGGATGTTGATTGTGGTGGTAATACTTTGTCATGTTCTGAACTTCCTTCTAGTTCTAGACATGAAAAAGATGAACTAGGCGCATCTCCCAGTTCTGGTCATTTTCCTGAAAAAATGGACTTGGTCAATGATAAGAAGTCACCATCAATAAAGGACATTGGTACTGAAGGTGTTGATGGCAATGACAGTTCTGGTGATATACATGTCCAAGGTAATGATGACGATGATGACAAAGATGACCACAATGGTGTTGATGAGGGGCAAGAAGGCATGGAGGTGTTTGAAACTCCAGGGAAGAGTCCTAGAGCTGTAGAAATCATGGCAGTGACATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

656

Amino Acids

74.19

Weight (kDa)

5.96

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 170 - 258 5.8e-09 BAH domain
Agenet PF05641 372 - 446 4.2e-17 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1418
Acc36I ACCTGC 1 cut(s) 694
AccI GTMKAC 1 cut(s) 1091
AciI CCGC 1 cut(s) 1300
AclWI GGATC 4 cut(s) 364, 1252, 1265, 1506
AcoI YGGCCR 2 cut(s) 798, 1325
AcsI RAATTY 1 cut(s) 922
AcuI CTGAAG 1 cut(s) 1821
AfaI GTAC 5 cut(s) 127, 331, 807, 1171, 1798
AfiI CCNNNNNNNGG 3 cut(s) 634, 1339, 1730
AflIII ACRYGT 3 cut(s) 147, 455, 1837
AgsI TTSAA 7 cut(s) 88, 305, 412, 1451, 1483, 1581, 1919
AjnI CCWGG 1 cut(s) 1924
AleI CACNNNNGTG 1 cut(s) 1881
AluBI AGCT 9 cut(s) 203, 323, 469, 991, 1373, 1434, 1473, 1590, 1943
AluI AGCT 9 cut(s) 203, 323, 469, 991, 1373, 1434, 1473, 1590, 1943
Alw21I GWGCWC 3 cut(s) 18, 186, 775
Alw44I GTGCAC 2 cut(s) 182, 771
AlwI GGATC 4 cut(s) 364, 1252, 1265, 1506
Ama87I CYCGRG 1 cut(s) 388
AoxI GGCC 6 cut(s) 798, 970, 1019, 1309, 1325, 1601
ApaI GGGCCC 1 cut(s) 974
ApaLI GTGCAC 2 cut(s) 182, 771
ApeKI GCWGC 4 cut(s) 271, 1155, 1373, 1431
ApoI RAATTY 1 cut(s) 922
AspLEI GCGC 1 cut(s) 1718
AspS9I GGNCC 7 cut(s) 362, 731, 970, 971, 1351, 1528, 1602
AsuC2I CCSGG 1 cut(s) 1464
AsuHPI GGTGA 5 cut(s) 617, 662, 853, 1767, 1841
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 4 cut(s) 362, 731, 1351, 1528
AxyI CCTNAGG 2 cut(s) 786, 1338
BaeGI GKGCMC 3 cut(s) 186, 775, 974
BalI TGGCCA 1 cut(s) 800
BamHI GGATCC 1 cut(s) 1257
BanII GRGCYC 1 cut(s) 974
BauI CACGAG 1 cut(s) 750
BbsI GAAGAC 1 cut(s) 591
Bbv12I GWGCWC 3 cut(s) 18, 186, 775
BbvI GCAGC 4 cut(s) 283, 1142, 1360, 1443
BccI CCATC 4 cut(s) 722, 1391, 1786, 1805
BceAI ACGGC 2 cut(s) 1296, 1340
BcgI CGANNNNNNTGC 2 cut(s) 1169, 1203
BciT130I CCWGG 1 cut(s) 1926
BcnI CCSGG 1 cut(s) 1464
BfaI CTAG 9 cut(s) 1008, 1223, 1307, 1512, 1599, 1686, 1692, 1712, 1938
BfmI CTRYAG 3 cut(s) 490, 817, 1944
BfuAI ACCTGC 1 cut(s) 694
BisI GCNGC 5 cut(s) 272, 1156, 1301, 1374, 1432
BlpI GCTNAGC 1 cut(s) 1278
BlsI GCNGC 5 cut(s) 273, 1157, 1302, 1375, 1433
Bme1390I CCNGG 2 cut(s) 1464, 1926
Bme18I GGWCC 4 cut(s) 362, 731, 1351, 1528
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 7 cut(s) 362, 731, 970, 971, 1351, 1528, 1602
BmiI GGNNCC 5 cut(s) 364, 972, 1035, 1259, 1529
BmrFI CCNGG 2 cut(s) 1464, 1926
BmrI ACTGGG 1 cut(s) 1719
BmsI GCATC 4 cut(s) 855, 1312, 1372, 1727
BmuI ACTGGG 1 cut(s) 1719
BpiI GAAGAC 1 cut(s) 591
BpmI CTGGAG 1 cut(s) 1908
Bpu1102I GCTNAGC 1 cut(s) 1278
BpuEI CTTGAG 4 cut(s) 314, 455, 1268, 1382
BpuMI CCSGG 1 cut(s) 1464
BsaJI CCNNGG 5 cut(s) 165, 1463, 1626, 1843, 1925
Bsc4I CCNNNNNNNGG 3 cut(s) 634, 1339, 1730
Bse1I ACTGG 4 cut(s) 1278, 1426, 1531, 1725
Bse21I CCTNAGG 2 cut(s) 786, 1338
Bse3DI GCAATG 2 cut(s) 1620, 1822
BseBI CCWGG 1 cut(s) 1926
BseDI CCNNGG 5 cut(s) 165, 1463, 1626, 1843, 1925
BseGI GGATG 4 cut(s) 1241, 1613, 1636, 1645
BseLI CCNNNNNNNGG 3 cut(s) 634, 1339, 1730
BseMI GCAATG 2 cut(s) 1620, 1822
BseMII CTCAG 4 cut(s) 213, 800, 1329, 1581
BseNI ACTGG 4 cut(s) 1278, 1426, 1531, 1725
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 3 cut(s) 186, 775, 974
BseXI GCAGC 4 cut(s) 283, 1142, 1360, 1443
BseYI CCCAGC 1 cut(s) 991
BsgI GTGCAG 2 cut(s) 722, 735
BshFI GGCC 6 cut(s) 800, 972, 1021, 1311, 1327, 1603
BsiHKAI GWGCWC 3 cut(s) 18, 186, 775
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 1 cut(s) 1463
BslFI GGGAC 3 cut(s) 348, 891, 1541
BslI CCNNNNNNNGG 3 cut(s) 634, 1339, 1730
BsmFI GGGAC 3 cut(s) 348, 891, 1541
BsmI GAATGC 2 cut(s) 485, 1146
BsnI GGCC 6 cut(s) 800, 972, 1021, 1311, 1327, 1603
BsoBI CYCGRG 1 cut(s) 388
Bsp120I GGGCCC 1 cut(s) 970
Bsp1286I GDGCHC 4 cut(s) 18, 186, 775, 974
Bsp1407I TGTACA 1 cut(s) 1169
Bsp143I GATC 3 cut(s) 369, 1257, 1498
Bsp1720I GCTNAGC 1 cut(s) 1278
BspACI CCGC 1 cut(s) 1300
BspANI GGCC 6 cut(s) 800, 972, 1021, 1311, 1327, 1603
BspCNI CTCAG 4 cut(s) 212, 799, 1330, 1580
BspLI GGNNCC 5 cut(s) 364, 972, 1035, 1259, 1529
BspMI ACCTGC 1 cut(s) 694
BspPI GGATC 4 cut(s) 364, 1252, 1265, 1506
BsrDI GCAATG 2 cut(s) 1620, 1822
BsrGI TGTACA 1 cut(s) 1169
BsrI ACTGG 4 cut(s) 1278, 1426, 1531, 1725
BssECI CCNNGG 5 cut(s) 165, 1463, 1626, 1843, 1925
BssMI GATC 3 cut(s) 369, 1257, 1498
BssNAI GTATAC 1 cut(s) 1092
BssSI CACGAG 1 cut(s) 750
BssT1I CCWWGG 2 cut(s) 1626, 1843
Bst1107I GTATAC 1 cut(s) 1092
Bst2BI CACGAG 1 cut(s) 750
Bst2UI CCWGG 1 cut(s) 1926
Bst4CI ACNGT 8 cut(s) 20, 68, 422, 629, 742, 1101, 1174, 1823
Bst6I CTCTTC 1 cut(s) 1925
BstAPI GCANNNNNTGC 1 cut(s) 1382
BstAUI TGTACA 1 cut(s) 1169
BstC8I GCNNGC 2 cut(s) 1298, 1329
BstDEI CTNAG 7 cut(s) 199, 786, 999, 1278, 1338, 1502, 1567
BstF5I GGATG 4 cut(s) 1241, 1613, 1636, 1645
BstHHI GCGC 1 cut(s) 1718
BstKTI GATC 3 cut(s) 372, 1260, 1501
BstMBI GATC 3 cut(s) 369, 1257, 1498
BstMWI GCNNNNNNNGC 5 cut(s) 268, 700, 797, 1152, 1382
BstNI CCWGG 1 cut(s) 1926
BstNSI RCATGY 4 cut(s) 151, 459, 1300, 1841
BstSCI CCNGG 2 cut(s) 1462, 1924
BstSFI CTRYAG 3 cut(s) 490, 817, 1944
BstSLI GKGCMC 3 cut(s) 186, 775, 974
BstV1I GCAGC 4 cut(s) 283, 1142, 1360, 1443
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 3 cut(s) 369, 1257, 1498
BstXI CCANNNNNNTGG 1 cut(s) 1142
BstYI RGATCY 3 cut(s) 369, 1257, 1498
BstZ17I GTATAC 1 cut(s) 1092
Bsu36I CCTNAGG 2 cut(s) 786, 1338
BsuRI GGCC 6 cut(s) 800, 972, 1021, 1311, 1327, 1603
BtgZI GCGATG 1 cut(s) 1410
BtsCI GGATG 4 cut(s) 1241, 1613, 1636, 1645
BtsI GCAGTG 1 cut(s) 1965
BtsIMutI CAGTG 4 cut(s) 16, 1097, 1538, 1965
BveI ACCTGC 1 cut(s) 694
Cac8I GCNNGC 2 cut(s) 1298, 1329
CfoI GCGC 1 cut(s) 1718
Cfr13I GGNCC 7 cut(s) 362, 731, 970, 971, 1351, 1528, 1602
Csp6I GTAC 5 cut(s) 126, 330, 806, 1170, 1797
CviQI GTAC 5 cut(s) 126, 330, 806, 1170, 1797
DdeI CTNAG 7 cut(s) 199, 786, 999, 1278, 1338, 1502, 1567
DpnI GATC 3 cut(s) 371, 1259, 1500
DpnII GATC 3 cut(s) 369, 1257, 1498
DraI TTTAAA 1 cut(s) 829
EaeI YGGCCR 2 cut(s) 798, 1325
Eam1104I CTCTTC 1 cut(s) 1925
EarI CTCTTC 1 cut(s) 1925
Eco130I CCWWGG 2 cut(s) 1626, 1843
Eco24I GRGCYC 1 cut(s) 974
Eco47I GGWCC 4 cut(s) 362, 731, 1351, 1528
Eco57I CTGAAG 1 cut(s) 1821
Eco81I CCTNAGG 2 cut(s) 786, 1338
Eco88I CYCGRG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 1602
EcoRII CCWGG 1 cut(s) 1924
EcoT14I CCWWGG 2 cut(s) 1626, 1843
EcoT22I ATGCAT 2 cut(s) 870, 1387
EcoT38I GRGCYC 1 cut(s) 974
ErhI CCWWGG 2 cut(s) 1626, 1843
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FaqI GGGAC 3 cut(s) 348, 891, 1541
FauNDI CATATG 1 cut(s) 697
FblI GTMKAC 1 cut(s) 1091
Fnu4HI GCNGC 5 cut(s) 272, 1156, 1301, 1374, 1432
FokI GGATG 4 cut(s) 1248, 1600, 1643, 1652
FriOI GRGCYC 1 cut(s) 974
Fsp4HI GCNGC 5 cut(s) 272, 1156, 1301, 1374, 1432
FspBI CTAG 9 cut(s) 1008, 1223, 1307, 1512, 1599, 1686, 1692, 1712, 1938
GlaI GCGC 1 cut(s) 1717
GluI GCNGC 5 cut(s) 272, 1156, 1301, 1374, 1432
GsaI CCCAGC 1 cut(s) 995
GsuI CTGGAG 1 cut(s) 1908
HaeIII GGCC 6 cut(s) 800, 972, 1021, 1311, 1327, 1603
HapII CCGG 1 cut(s) 1463
HhaI GCGC 1 cut(s) 1718
Hin6I GCGC 1 cut(s) 1716
HinP1I GCGC 1 cut(s) 1716
HindIII AAGCTT 2 cut(s) 321, 1471
HinfI GANTC 8 cut(s) 92, 104, 296, 311, 889, 904, 1203, 1933
HpaII CCGG 1 cut(s) 1463
HphI GGTGA 5 cut(s) 617, 662, 853, 1767, 1841
Hpy166II GTNNAC 7 cut(s) 184, 464, 755, 773, 1092, 1170, 1456
Hpy188I TCNGA 3 cut(s) 928, 948, 1675
Hpy8I GTNNAC 7 cut(s) 184, 464, 755, 773, 1092, 1170, 1456
HpyCH4III ACNGT 8 cut(s) 20, 68, 422, 629, 742, 1101, 1174, 1823
HpyF10VI GCNNNNNNNGC 5 cut(s) 268, 700, 797, 1152, 1382
HpyF3I CTNAG 7 cut(s) 199, 786, 999, 1278, 1338, 1502, 1567
HspAI GCGC 1 cut(s) 1716
Kzo9I GATC 3 cut(s) 369, 1257, 1498
LmnI GCTCC 2 cut(s) 1370, 1392
Lsp1109I GCAGC 4 cut(s) 283, 1142, 1360, 1443
LweI GCATC 4 cut(s) 855, 1312, 1372, 1727
MaeI CTAG 9 cut(s) 1008, 1223, 1307, 1512, 1599, 1686, 1692, 1712, 1938
MaeIII GTNAC 4 cut(s) 297, 977, 1773, 1960
MalI GATC 3 cut(s) 371, 1259, 1500
MboI GATC 3 cut(s) 369, 1257, 1498
MboII GAAGA 5 cut(s) 584, 596, 971, 1569, 1942
MfeI CAATTG 1 cut(s) 1377
MflI RGATCY 3 cut(s) 369, 1257, 1498
MhlI GDGCHC 4 cut(s) 18, 186, 775, 974
MlsI TGGCCA 1 cut(s) 800
MluCI AATT 8 cut(s) 205, 354, 651, 922, 1124, 1377, 1444, 1584
MluNI TGGCCA 1 cut(s) 800
MlyI GAGTC 4 cut(s) 305, 913, 1212, 1942
MmeI TCCRAC 4 cut(s) 368, 1061, 1348, 1641
Mox20I TGGCCA 1 cut(s) 800
Mph1103I ATGCAT 2 cut(s) 870, 1387
MscI TGGCCA 1 cut(s) 800
MseI TTAA 6 cut(s) 504, 516, 642, 746, 828, 1104
MslI CAYNNNNRTG 5 cut(s) 279, 454, 1881, 1910, 1958
Msp20I TGGCCA 1 cut(s) 800
MspA1I CMGCKG 1 cut(s) 1434
MspI CCGG 1 cut(s) 1463
MspR9I CCNGG 2 cut(s) 1464, 1926
MunI CAATTG 1 cut(s) 1377
Mva1269I GAATGC 2 cut(s) 485, 1146
MvaI CCWGG 1 cut(s) 1926
MwoI GCNNNNNNNGC 5 cut(s) 268, 700, 797, 1152, 1382
NciI CCSGG 1 cut(s) 1464
NdeI CATATG 1 cut(s) 697
NdeII GATC 3 cut(s) 369, 1257, 1498
NlaIV GGNNCC 5 cut(s) 364, 972, 1035, 1259, 1529
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 4 cut(s) 297, 977, 1773, 1960
NsiI ATGCAT 2 cut(s) 870, 1387
NspI RCATGY 4 cut(s) 151, 459, 1300, 1841
OliI CACNNNNGTG 1 cut(s) 1881
PaeI GCATGC 1 cut(s) 1300
PciI ACATGT 3 cut(s) 147, 455, 1837
PctI GAATGC 2 cut(s) 485, 1146
PfeI GAWTC 4 cut(s) 92, 104, 311, 889
PflFI GACNNNGTC 1 cut(s) 1757
PkrI GCNGC 5 cut(s) 273, 1157, 1302, 1375, 1433
PleI GAGTC 4 cut(s) 304, 912, 1211, 1941
PpsI GAGTC 4 cut(s) 304, 912, 1211, 1941
PscI ACATGT 3 cut(s) 147, 455, 1837
PsiI TTATAA 1 cut(s) 1418
Psp6I CCWGG 1 cut(s) 1924
PspFI CCCAGC 1 cut(s) 991
PspGI CCWGG 1 cut(s) 1924
PspN4I GGNNCC 5 cut(s) 364, 972, 1035, 1259, 1529
PspOMI GGGCCC 1 cut(s) 970
PspPI GGNCC 7 cut(s) 362, 731, 970, 971, 1351, 1528, 1602
PsuI RGATCY 3 cut(s) 369, 1257, 1498
PsyI GACNNNGTC 1 cut(s) 1757
PvuII CAGCTG 1 cut(s) 1434
RsaI GTAC 5 cut(s) 127, 331, 807, 1171, 1798
RsaNI GTAC 5 cut(s) 126, 330, 806, 1170, 1797
RseI CAYNNNNRTG 5 cut(s) 279, 454, 1881, 1910, 1958
SaqAI TTAA 6 cut(s) 504, 516, 642, 746, 828, 1104
SatI GCNGC 5 cut(s) 272, 1156, 1301, 1374, 1432
Sau3AI GATC 3 cut(s) 369, 1257, 1498
Sau96I GGNCC 7 cut(s) 362, 731, 970, 971, 1351, 1528, 1602
SchI GAGTC 4 cut(s) 305, 913, 1212, 1942
ScrFI CCNGG 2 cut(s) 1464, 1926
SduI GDGCHC 4 cut(s) 18, 186, 775, 974
SfaNI GCATC 4 cut(s) 855, 1312, 1372, 1727
SfcI CTRYAG 3 cut(s) 490, 817, 1944
SinI GGWCC 4 cut(s) 362, 731, 1351, 1528
SmiMI CAYNNNNRTG 5 cut(s) 279, 454, 1881, 1910, 1958
SmlI CTYRAG 4 cut(s) 293, 470, 1247, 1361
SmoI CTYRAG 4 cut(s) 293, 470, 1247, 1361
SphI GCATGC 1 cut(s) 1300
Sse9I AATT 8 cut(s) 205, 354, 651, 922, 1124, 1377, 1444, 1584
SsiI CCGC 1 cut(s) 1300
SspMI CTAG 9 cut(s) 1008, 1223, 1307, 1512, 1599, 1686, 1692, 1712, 1938
StyD4I CCNGG 2 cut(s) 1462, 1924
StyI CCWWGG 2 cut(s) 1626, 1843
TaaI ACNGT 8 cut(s) 20, 68, 422, 629, 742, 1101, 1174, 1823
TaqI TCGA 2 cut(s) 227, 1189
TasI AATT 8 cut(s) 205, 354, 651, 922, 1124, 1377, 1444, 1584
TatI WGTACW 2 cut(s) 805, 1169
TauI GCSGC 1 cut(s) 1303
TfiI GAWTC 4 cut(s) 92, 104, 311, 889
Tru1I TTAA 6 cut(s) 504, 516, 642, 746, 828, 1104
Tru9I TTAA 6 cut(s) 504, 516, 642, 746, 828, 1104
TscAI CASTG 4 cut(s) 23, 1104, 1538, 1965
TseFI GTSAC 4 cut(s) 297, 977, 1773, 1960
TseI GCWGC 4 cut(s) 271, 1155, 1373, 1431
Tsp45I GTSAC 4 cut(s) 297, 977, 1773, 1960
TspGWI ACGGA 2 cut(s) 143, 201
TspRI CASTG 4 cut(s) 23, 1104, 1538, 1965
Tth111I GACNNNGTC 1 cut(s) 1757
VneI GTGCAC 2 cut(s) 182, 771
VpaK11BI GGWCC 4 cut(s) 362, 731, 1351, 1528
XapI RAATTY 1 cut(s) 922
XbaI TCTAGA 2 cut(s) 1511, 1691
XceI RCATGY 4 cut(s) 151, 459, 1300, 1841
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XmiI GTMKAC 1 cut(s) 1091
XspI CTAG 9 cut(s) 1008, 1223, 1307, 1512, 1599, 1686, 1692, 1712, 1938
Zsp2I ATGCAT 2 cut(s) 870, 1387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.