Rroxscaffold_2G00123490

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000163
Physical Location & Seq
Forward (+)
57316997 .. 57318581
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123490.1

Sequence Viewer

Length: 570 bp
ATGTCGTCCCCCACTTCCCTCCTCACCTTTTCTTCCATTTTCTCCTCTTTTCTCCCCTTTTCTCCTCTTCTCTGTCGTCCCCTCCTCACCTCTCACCTCTCTTTGCACATCAGCGTCGGTCTCTCACCTGGTAGAGGTCACTCTCTCCTCTCCTCAGCACTCTGCGTCTCTGCTCTCATTCCCTCAACTTTATTGAGAGATTGTGCTTTAGAGGATTTTGACAATGGCACATATGAAGACGACCCCCGATCTTTCTTGAAGAAATTCTTGATTCCAAAGTTTAAGATTTCATCCGGGTTTGAAGCTTCGGGTGTTCTGAAGAAAATAGGGCTGGGGGATGGTTGCGATTTAATGGCGATATTTCACGAATCTGTAATAGACGTTGATGAAAATGGCACAACAGCTGCAGCTGCTACTTGTGCTCAAATGTGGCTTAGCGATGGTAACTTCTCCAAACCTAAAGAGATAGAAGAATTTGTGGCTGACCACCCCTTCATGTTTCTCATAACAGAAAACAGAACCAGAACGGTGCTGTTCATGGGGCAGGTGTTCAATCCTCTTGCAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

189

Amino Acids

20.53

Weight (kDa)

5.27

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 89 - 186 8.3e-20 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 535
Acc36I ACCTGC 1 cut(s) 535
AcsI RAATTY 2 cut(s) 263, 473
AcuI CTGAAG 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 134, 563
AgsI TTSAA 3 cut(s) 259, 302, 553
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 3 cut(s) 305, 404, 410
AluI AGCT 3 cut(s) 305, 404, 410
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 2 cut(s) 125, 172
ApeKI GCWGC 3 cut(s) 404, 407, 410
ApoI RAATTY 2 cut(s) 263, 473
Asp700I GAANNNNTTC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 295
AsuHPI GGTGA 4 cut(s) 16, 79, 86, 117
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 424
BbvCI CCTCAGC 1 cut(s) 154
BbvI GCAGC 3 cut(s) 391, 397, 419
BccI CCATC 2 cut(s) 332, 434
BciT130I CCWGG 1 cut(s) 129
BcnI CCSGG 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 125, 172
BfmI CTRYAG 1 cut(s) 405
BfuAI ACCTGC 1 cut(s) 535
BisI GCNGC 3 cut(s) 405, 408, 411
BlpI GCTNAGC 1 cut(s) 434
BlsI GCNGC 3 cut(s) 406, 409, 412
Bme1390I CCNGG 2 cut(s) 129, 295
BmrFI CCNGG 2 cut(s) 129, 295
BpiI GAAGAC 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 154
Bpu1102I GCTNAGC 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 295
BsaI GGTCTC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 563
BseBI CCWGG 1 cut(s) 129
BseGI GGATG 2 cut(s) 290, 343
BseLI CCNNNNNNNGG 2 cut(s) 134, 563
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 6 cut(s) 11, 34, 54, 74, 137, 142
BseXI GCAGC 3 cut(s) 391, 397, 419
BseYI CCCAGC 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 424
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 134, 563
BsmAI GTCTC 2 cut(s) 125, 172
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 63
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 1 cut(s) 248
Bsp1720I GCTNAGC 1 cut(s) 434
BspCNI CTCAG 1 cut(s) 167
BspMAI CTGCAG 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 125
BssMI GATC 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 565
BstDEI CTNAG 2 cut(s) 154, 434
BstENI CCTNNNNNAGG 2 cut(s) 132, 561
BstF5I GGATG 2 cut(s) 290, 343
BstKTI GATC 1 cut(s) 251
BstMAI GTCTC 2 cut(s) 125, 172
BstMBI GATC 1 cut(s) 248
BstMWI GCNNNNNNNGC 2 cut(s) 410, 419
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 127, 293
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 3 cut(s) 391, 397, 419
BstV2I GAAGAC 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 2 cut(s) 290, 343
BveI ACCTGC 1 cut(s) 535
Cac8I GCNNGC 1 cut(s) 565
CseI GACGC 2 cut(s) 103, 154
CsiI ACCWGGT 1 cut(s) 127
CviAII CATG 2 cut(s) 496, 538
CviJI RGCY 7 cut(s) 305, 331, 404, 410, 433, 482, 567
CviKI_1 RGCY 7 cut(s) 305, 331, 404, 410, 433, 482, 567
DdeI CTNAG 2 cut(s) 154, 434
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 338
EcoNI CCTNNNNNAGG 2 cut(s) 132, 561
EcoRII CCWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 2 cut(s) 499, 541
FaiI YATR 5 cut(s) 232, 234, 497, 506, 539
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 1 cut(s) 63
FatI CATG 2 cut(s) 495, 537
FauNDI CATATG 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 405, 408, 411
FokI GGATG 2 cut(s) 277, 350
Fsp4HI GCNGC 3 cut(s) 405, 408, 411
GluI GCNGC 3 cut(s) 405, 408, 411
GsaI CCCAGC 1 cut(s) 335
HapII CCGG 1 cut(s) 294
HgaI GACGC 2 cut(s) 103, 154
Hin1II CATG 2 cut(s) 499, 541
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 2 cut(s) 271, 368
HpaII CCGG 1 cut(s) 294
HphI GGTGA 4 cut(s) 16, 79, 86, 117
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 3 cut(s) 256, 268, 365
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 502
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 3 cut(s) 106, 407, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 419
HpyF3I CTNAG 2 cut(s) 154, 434
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 2 cut(s) 499, 541
Kzo9I GATC 1 cut(s) 248
LpnPI CCDG 7 cut(s) 114, 141, 307, 317, 530, 535, 549
Lsp1109I GCAGC 3 cut(s) 391, 397, 419
MabI ACCWGGT 1 cut(s) 127
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 137, 443
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 6 cut(s) 24, 59, 248, 271, 331, 482
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 2 cut(s) 263, 473
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 2 cut(s) 282, 350
MspA1I CMGCKG 2 cut(s) 404, 410
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 129, 295
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 410, 419
NciI CCSGG 1 cut(s) 295
NdeI CATATG 1 cut(s) 232
NdeII GATC 1 cut(s) 248
NlaIII CATG 2 cut(s) 499, 541
NmuCI GTSAC 1 cut(s) 137
PaqCI CACCTGC 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 271, 368
PkrI GCNGC 3 cut(s) 406, 409, 412
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 1 cut(s) 127
PstI CTGCAG 1 cut(s) 409
PvuII CAGCTG 2 cut(s) 404, 410
SaqAI TTAA 2 cut(s) 282, 350
SatI GCNGC 3 cut(s) 405, 408, 411
Sau3AI GATC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 129, 295
SduI GDGCHC 1 cut(s) 424
SexAI ACCWGGT 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 405
Sse9I AATT 2 cut(s) 263, 473
StyD4I CCNGG 2 cut(s) 127, 293
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 1 cut(s) 384
TaqII GACCGA 1 cut(s) 107
TasI AATT 2 cut(s) 263, 473
TfiI GAWTC 2 cut(s) 271, 368
Tru1I TTAA 2 cut(s) 282, 350
Tru9I TTAA 2 cut(s) 282, 350
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 3 cut(s) 404, 407, 410
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 5 cut(s) 249, 279, 402, 484, 526
XagI CCTNNNNNAGG 2 cut(s) 132, 561
XapI RAATTY 2 cut(s) 263, 473
XmnI GAANNNNTTC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.