FvH4_5g21100

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000163
Physical Location & Seq
Forward (+)
12691062 .. 12691840
779 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21100.t1

Sequence Viewer

Length: 621 bp
ATGAGCCTATGCGAGAATACGTTAGAATTTAGAAAGCAGACAAACATCGCACTTGGAATGACAAAGAAGCTGCTTCTAAACGAAGCCAAGGACTCAAACCTGGTCTGCACGCCGCTTTTCATGCAAACAGTGGTCTCTCTTCTCAACTCCAAAACCAACTCCACCCTAGACGACCGTTTATTGGTCCCCAAGCTCGCGGCTTGGGTGTTTGCAGACGGGTCCCGAAAAGGTGGGCCCCGCCTCTCATGTGCCAATGGCCTCTGGGTGGATGAGTCCGTCCATCTGGAGCCTTCTCTGGAACAGGCAGGGGGCAATGCTTACAAGGCGGCTTTGAACCGAGTGGATTTCAAGACTGACTACGAGGAAGTGACAACTAGAGTGAATTCATGGTTGGACAAGGAGGCTAACGGCCTCATCAATAGTGCTCTTTCTCCGGGCTCAGTTGATGCCCTAACGAGGCTCCTATTTGCTAATGCATTGTACTTCAAAGGAGATTGGGACAAAGAGTTTGATGCGTCAAAAACCGAAAAATATGACTTCCAACTTCTCGATGGGAACCTAATTAAACGAGTGCCTTACATGACCAGCGATGAGAGGCAGCACGTACATAACCGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

207

Amino Acids

23.09

Weight (kDa)

5.96

Isoelectric Point (pI)

26.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 13 - 200 1.1e-28 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 197
AciI CCGC 4 cut(s) 113, 197, 238, 326
AcsI RAATTY 2 cut(s) 26, 382
AfaI GTAC 2 cut(s) 482, 606
AfiI CCNNNNNNNGG 3 cut(s) 181, 265, 456
AgsI TTSAA 3 cut(s) 334, 349, 487
AjnI CCWGG 1 cut(s) 99
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 2 cut(s) 70, 193
AluI AGCT 2 cut(s) 70, 193
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 1 cut(s) 139
AoxI GGCC 3 cut(s) 233, 256, 409
ApaI GGGCCC 1 cut(s) 237
ApeKI GCWGC 2 cut(s) 70, 598
ApoI RAATTY 2 cut(s) 26, 382
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AspS9I GGNCC 4 cut(s) 184, 219, 233, 234
AsuC2I CCSGG 1 cut(s) 435
AvaII GGWCC 2 cut(s) 184, 219
BaeGI GKGCMC 1 cut(s) 237
BanII GRGCYC 2 cut(s) 237, 440
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 2 cut(s) 57, 610
BccI CCATC 2 cut(s) 288, 545
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 1 cut(s) 101
BcnI CCSGG 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 2 cut(s) 167, 375
BisI GCNGC 5 cut(s) 71, 113, 198, 327, 599
BlsI GCNGC 5 cut(s) 72, 114, 199, 328, 600
Bme1390I CCNGG 2 cut(s) 101, 435
Bme18I GGWCC 2 cut(s) 184, 219
BmgT120I GGNCC 4 cut(s) 184, 219, 233, 234
BmiI GGNNCC 8 cut(s) 186, 220, 221, 235, 236, 288, 461, 557
BmrFI CCNGG 2 cut(s) 101, 435
BmsI GCATC 2 cut(s) 436, 502
BpmI CTGGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 435
BsaAI YACGTR 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 265, 456
Bse3DI GCAATG 1 cut(s) 319
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 3 cut(s) 181, 265, 456
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 453
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 2 cut(s) 57, 610
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 3 cut(s) 235, 258, 411
BsiEI CGRYCG 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 427
BsiSI CCGG 1 cut(s) 434
BslFI GGGAC 3 cut(s) 170, 205, 512
BslI CCNNNNNNNGG 3 cut(s) 181, 265, 456
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 3 cut(s) 170, 205, 512
BsnI GGCC 3 cut(s) 235, 258, 411
Bso31I GGTCTC 1 cut(s) 139
Bsp120I GGGCCC 1 cut(s) 233
Bsp1286I GDGCHC 3 cut(s) 237, 427, 440
BspACI CCGC 4 cut(s) 113, 197, 238, 326
BspANI GGCC 3 cut(s) 235, 258, 411
BspCNI CTCAG 1 cut(s) 452
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 8 cut(s) 186, 220, 221, 235, 236, 288, 461, 557
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 2 cut(s) 130, 176
Bst6I CTCTTC 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 604
BstC8I GCNNGC 2 cut(s) 110, 195
BstDEI CTNAG 1 cut(s) 439
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 1 cut(s) 197
BstMAI GTCTC 1 cut(s) 139
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 121, 323
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 99, 433
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 57, 610
BsuRI GGCC 3 cut(s) 235, 258, 411
BtgZI GCGATG 2 cut(s) 31, 603
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 110, 195
Cfr13I GGNCC 4 cut(s) 184, 219, 233, 234
CseI GACGC 1 cut(s) 504
CsiI ACCWGGT 1 cut(s) 99
Csp6I GTAC 2 cut(s) 481, 605
CviAII CATG 4 cut(s) 121, 246, 387, 580
CviQI GTAC 2 cut(s) 481, 605
DdeI CTNAG 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 2 cut(s) 237, 440
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 184, 219
EcoO109I RGGNCCY 2 cut(s) 219, 234
EcoRI GAATTC 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 478
EcoT38I GRGCYC 2 cut(s) 237, 440
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 4 cut(s) 124, 249, 390, 583
FaiI YATR 7 cut(s) 10, 122, 247, 388, 534, 581, 609
FaqI GGGAC 3 cut(s) 170, 205, 512
FatI CATG 4 cut(s) 120, 245, 386, 579
FauI CCCGC 1 cut(s) 245
Fnu4HI GCNGC 5 cut(s) 71, 113, 198, 327, 599
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 2 cut(s) 237, 440
Fsp4HI GCNGC 5 cut(s) 71, 113, 198, 327, 599
FspBI CTAG 2 cut(s) 167, 375
GluI GCNGC 5 cut(s) 71, 113, 198, 327, 599
GsuI CTGGAG 1 cut(s) 305
HaeIII GGCC 3 cut(s) 235, 258, 411
HapII CCGG 1 cut(s) 434
HgaI GACGC 1 cut(s) 504
Hin1II CATG 4 cut(s) 124, 249, 390, 583
HinfI GANTC 2 cut(s) 92, 272
HpaII CCGG 1 cut(s) 434
Hpy188III TCNNGA 5 cut(s) 222, 284, 296, 349, 548
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 2 cut(s) 130, 176
HpyCH4IV ACGT 2 cut(s) 20, 603
HpyCH4V TGCA 4 cut(s) 108, 124, 212, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 323
HpyF3I CTNAG 1 cut(s) 439
HpySE526I ACGT 2 cut(s) 20, 603
Hsp92II CATG 4 cut(s) 124, 249, 390, 583
KflI GGGWCCC 1 cut(s) 219
LmnI GCTCC 2 cut(s) 286, 465
LpnPI CCDG 9 cut(s) 86, 113, 247, 269, 281, 287, 291, 447, 598
Lsp1109I GCAGC 2 cut(s) 57, 610
LweI GCATC 2 cut(s) 436, 502
MabI ACCWGGT 1 cut(s) 99
MaeI CTAG 2 cut(s) 167, 375
MaeII ACGT 2 cut(s) 20, 603
MaeIII GTNAC 1 cut(s) 367
MboII GAAGA 1 cut(s) 131
MhlI GDGCHC 3 cut(s) 237, 427, 440
MluCI AATT 3 cut(s) 26, 382, 561
MlyI GAGTC 2 cut(s) 86, 281
MmeI TCCRAC 2 cut(s) 372, 565
MnlI CCTC 7 cut(s) 251, 269, 355, 394, 422, 450, 588
Mph1103I ATGCAT 1 cut(s) 478
MseI TTAA 1 cut(s) 564
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 2 cut(s) 101, 435
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 121, 323
NciI CCSGG 1 cut(s) 435
NlaIII CATG 4 cut(s) 124, 249, 390, 583
NlaIV GGNNCC 8 cut(s) 186, 220, 221, 235, 236, 288, 461, 557
NmuCI GTSAC 1 cut(s) 367
NsiI ATGCAT 1 cut(s) 478
PkrI GCNGC 5 cut(s) 72, 114, 199, 328, 600
PleI GAGTC 2 cut(s) 86, 280
PpsI GAGTC 2 cut(s) 86, 280
Ppu21I YACGTR 1 cut(s) 604
PpuMI RGGWCCY 1 cut(s) 219
Psp5II RGGWCCY 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 8 cut(s) 186, 220, 221, 235, 236, 288, 461, 557
PspOMI GGGCCC 1 cut(s) 233
PspPI GGNCC 4 cut(s) 184, 219, 233, 234
PspPPI RGGWCCY 1 cut(s) 219
RsaI GTAC 2 cut(s) 482, 606
RsaNI GTAC 2 cut(s) 481, 605
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 5 cut(s) 71, 113, 198, 327, 599
Sau96I GGNCC 4 cut(s) 184, 219, 233, 234
SchI GAGTC 2 cut(s) 86, 281
ScrFI CCNGG 2 cut(s) 101, 435
SduI GDGCHC 3 cut(s) 237, 427, 440
SetI ASST 7 cut(s) 23, 72, 102, 195, 232, 561, 606
SexAI ACCWGGT 1 cut(s) 99
SfaNI GCATC 2 cut(s) 436, 502
SinI GGWCC 2 cut(s) 184, 219
Sse9I AATT 3 cut(s) 26, 382, 561
SsiI CCGC 4 cut(s) 113, 197, 238, 326
SspMI CTAG 2 cut(s) 167, 375
StyD4I CCNGG 2 cut(s) 99, 433
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 130, 176
TaiI ACGT 2 cut(s) 23, 606
TaqI TCGA 1 cut(s) 549
TasI AATT 3 cut(s) 26, 382, 561
TatI WGTACW 1 cut(s) 480
TauI GCSGC 3 cut(s) 115, 200, 329
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 2 cut(s) 70, 598
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 2 cut(s) 109, 375
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 1 cut(s) 135
VpaK11BI GGWCC 2 cut(s) 184, 219
XapI RAATTY 2 cut(s) 26, 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XspI CTAG 2 cut(s) 167, 375
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.