MD02G1282200.v1.1

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
33816824 .. 33817075
252 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1282200.v1.1.491

Sequence Viewer

Length: 252 bp
ATGATTGAAAGCTACGGATGGCATTATGTAAAAGCCTTTGACGGCTTCAAAGTCTCAAAGCTTCCGTACAAGCAAGGCAAAGACAAGGAGAGGCGGTTTTCTATGTACTTTTTACTTCCAAATTCAAGAAATGGGCTCCCAGCTTTGGTCAAGAGAGTTTGTTCTGAACCTGATTTCTTAGATTGCCATCTCCCCGAAATACAACGTGAACCTGGTGCCTTGAAGATCCCAAAGTTTAATATTAACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.69

Weight (kDa)

9.39

Isoelectric Point (pI)

66.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 3 - 82 1.9e-06 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AciI CCGC 1 cut(s) 94
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 121
AfaI GTAC 2 cut(s) 68, 107
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 4 cut(s) 8, 49, 126, 223
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 3 cut(s) 12, 61, 143
AluI AGCT 3 cut(s) 12, 61, 143
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 121
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 138
BccI CCATC 2 cut(s) 12, 195
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 213
BmiI GGNNCC 2 cut(s) 137, 217
BmrFI CCNGG 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 23
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 145
BseYI CCCAGC 1 cut(s) 139
BshNI GGYRCC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 137, 217
BspPI GGATC 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 215
BssMI GATC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 23
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 1 cut(s) 225
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BtsCI GGATG 1 cut(s) 23
CsiI ACCWGGT 1 cut(s) 211
Csp6I GTAC 2 cut(s) 67, 106
CviJI RGCY 6 cut(s) 12, 35, 45, 61, 136, 143
CviKI_1 RGCY 6 cut(s) 12, 35, 45, 61, 136, 143
CviQI GTAC 2 cut(s) 67, 106
DdeI CTNAG 1 cut(s) 178
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 138
FaiI YATR 2 cut(s) 27, 104
FokI GGATG 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 138
GsaI CCCAGC 1 cut(s) 143
HindIII AAGCTT 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 126, 151
Hpy8I GTNNAC 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 178
HpySE526I ACGT 1 cut(s) 205
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 4 cut(s) 153, 183, 198, 225
MabI ACCWGGT 1 cut(s) 211
MaeII ACGT 1 cut(s) 205
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 1 cut(s) 235
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 1 cut(s) 121
MnlI CCTC 1 cut(s) 84
MseI TTAA 3 cut(s) 237, 243, 250
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
NdeII GATC 1 cut(s) 225
NlaIV GGNNCC 2 cut(s) 137, 217
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 137, 217
PsuI RGATCY 1 cut(s) 225
RsaI GTAC 2 cut(s) 68, 107
RsaNI GTAC 2 cut(s) 67, 106
SaqAI TTAA 3 cut(s) 237, 243, 250
Sau3AI GATC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 1 cut(s) 138
SetI ASST 6 cut(s) 14, 63, 145, 172, 208, 214
SexAI ACCWGGT 1 cut(s) 211
Sse9I AATT 1 cut(s) 121
SsiI CCGC 1 cut(s) 94
SspI AATATT 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 211
TaiI ACGT 1 cut(s) 208
TasI AATT 1 cut(s) 121
TatI WGTACW 1 cut(s) 105
Tru1I TTAA 3 cut(s) 237, 243, 250
Tru9I TTAA 3 cut(s) 237, 243, 250
TspGWI ACGGA 2 cut(s) 30, 54
XapI RAATTY 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.