MD04G1136500.v1.1

serine-type endopeptidase inhibitor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000163
Physical Location & Seq
Forward (+)
22410787 .. 22411324
538 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1136500.v1.1.491

Sequence Viewer

Length: 489 bp
ATGAATTCTACCTTGGCAATCGGAGATCATCAGTTAACGCACCCCTTCATGAGAAGCTCTAAGGAACAATTTGTATGTGCCTTTGATGGCTTCAAAGTCTTAGAGCTTCCTTATGAAATGGGGTTAGATGGGTCGCGTCTTTTCTCCATGTTTTTGTTTCTTTCGGATGAAGTAGATGGTCTACCAGCTTTGATCGAGAAAGTTTGTTCTAGCTCCAATTTCTTAGATCACCATGTTCCCTATATACGTGTTCTCGTTGCTTCCGAAATTCTCAAGGATATGGGACTCGTATTACCTTTTGACAGTTTGACAAAGATGGTGGAGTCGCCAGCTTCGGGTGAGGAGGACCTTTGTTTGTCCCAAATATTTCACAAATATTCCATGGAAGTTAATGAGGAGGGCACGGAAGCTTCAGCAGTTACTGTTTCTACTCATGGGTATGTAAAAGTTCTAGTGAATGACAATGAGTCTTTGATATTGCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05146 map05146
Pfam Domains
Protein Families
Serpin

Protein Analysis

163

Amino Acids

18.02

Weight (kDa)

4.58

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 12 - 142 1e-12 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 181
AccII CGCG 1 cut(s) 136
AcsI RAATTY 2 cut(s) 4, 267
AcuI CTGAAG 1 cut(s) 396
AfiI CCNNNNNNNGG 1 cut(s) 335
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 2 cut(s) 94, 485
AhdI GACNNNNNGTC 1 cut(s) 466
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 6 cut(s) 57, 106, 188, 213, 332, 410
AluI AGCT 6 cut(s) 57, 106, 188, 213, 332, 410
AlwNI CAGNNNCTG 1 cut(s) 422
ApoI RAATTY 2 cut(s) 4, 267
AspS9I GGNCC 1 cut(s) 346
AsuHPI GGTGA 2 cut(s) 221, 350
AvaII GGWCC 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 404
BccI CCATC 4 cut(s) 80, 122, 170, 310
BfaI CTAG 2 cut(s) 210, 452
Bme18I GGWCC 1 cut(s) 346
BmeRI GACNNNNNGTC 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 346
BpuEI CTTGAG 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 12, 381
Bsc4I CCNNNNNNNGG 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 12, 381
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 335
BseRI GAGGAG 2 cut(s) 356, 410
BseSI GKGCMC 1 cut(s) 404
Bsh1236I CGCG 1 cut(s) 136
BslFI GGGAC 2 cut(s) 297, 343
BslI CCNNNNNNNGG 1 cut(s) 335
BsmFI GGGAC 2 cut(s) 297, 343
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 3 cut(s) 25, 192, 226
Bsp19I CCATGG 1 cut(s) 381
BspFNI CGCG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 12, 381
BssMI GATC 3 cut(s) 25, 192, 226
BssT1I CCWWGG 2 cut(s) 12, 381
Bst4CI ACNGT 2 cut(s) 305, 424
BstBAI YACGTR 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 3 cut(s) 60, 100, 223
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 136
BstKTI GATC 3 cut(s) 28, 195, 229
BstMBI GATC 3 cut(s) 25, 192, 226
BstSLI GKGCMC 1 cut(s) 404
BstUI CGCG 1 cut(s) 136
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 330
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 346
CseI GACGC 1 cut(s) 125
CspCI CAANNNNNGTGG 2 cut(s) 300, 335
CviAII CATG 5 cut(s) 49, 148, 233, 382, 434
CviJI RGCY 7 cut(s) 57, 90, 106, 188, 213, 332, 410
CviKI_1 RGCY 7 cut(s) 57, 90, 106, 188, 213, 332, 410
DdeI CTNAG 3 cut(s) 60, 100, 223
DpnI GATC 3 cut(s) 27, 194, 228
DpnII GATC 3 cut(s) 25, 192, 226
DriI GACNNNNNGTC 1 cut(s) 466
Eam1105I GACNNNNNGTC 1 cut(s) 466
Eco130I CCWWGG 2 cut(s) 12, 381
Eco47I GGWCC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 4
EcoT14I CCWWGG 2 cut(s) 12, 381
ErhI CCWWGG 2 cut(s) 12, 381
FaeI CATG 5 cut(s) 52, 151, 236, 385, 437
FaqI GGGAC 2 cut(s) 297, 343
FatI CATG 5 cut(s) 48, 147, 232, 381, 433
FblI GTMKAC 1 cut(s) 181
FokI GGATG 1 cut(s) 179
FspBI CTAG 2 cut(s) 210, 452
HgaI GACGC 1 cut(s) 125
Hin1II CATG 5 cut(s) 52, 151, 236, 385, 437
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 3 cut(s) 285, 323, 467
HpaI GTTAAC 1 cut(s) 36
HphI GGTGA 2 cut(s) 221, 350
Hpy166II GTNNAC 2 cut(s) 36, 182
Hpy188I TCNGA 3 cut(s) 23, 166, 265
Hpy188III TCNNGA 2 cut(s) 49, 196
Hpy8I GTNNAC 2 cut(s) 36, 182
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 2 cut(s) 305, 424
HpyCH4IV ACGT 1 cut(s) 247
HpyF3I CTNAG 3 cut(s) 60, 100, 223
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 5 cut(s) 52, 151, 236, 385, 437
KspAI GTTAAC 1 cut(s) 36
Kzo9I GATC 3 cut(s) 25, 192, 226
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 2 cut(s) 198, 342
MaeI CTAG 2 cut(s) 210, 452
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 418
MalI GATC 3 cut(s) 27, 194, 228
MboI GATC 3 cut(s) 25, 192, 226
MhlI GDGCHC 1 cut(s) 404
MluCI AATT 4 cut(s) 4, 68, 217, 267
MlyI GAGTC 3 cut(s) 279, 332, 476
MnlI CCTC 4 cut(s) 334, 337, 388, 391
MseI TTAA 2 cut(s) 35, 390
MslI CAYNNNNRTG 1 cut(s) 438
MvnI CGCG 1 cut(s) 136
NcoI CCATGG 1 cut(s) 381
NdeII GATC 3 cut(s) 25, 192, 226
NlaIII CATG 5 cut(s) 52, 151, 236, 385, 437
PagI TCATGA 1 cut(s) 48
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PleI GAGTC 3 cut(s) 279, 331, 475
PpsI GAGTC 3 cut(s) 279, 331, 475
Ppu21I YACGTR 1 cut(s) 248
PpuMI RGGWCCY 1 cut(s) 346
Psp5II RGGWCCY 1 cut(s) 346
PspPI GGNCC 1 cut(s) 346
PspPPI RGGWCCY 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 2 cut(s) 35, 390
Sau3AI GATC 3 cut(s) 25, 192, 226
Sau96I GGNCC 1 cut(s) 346
SchI GAGTC 3 cut(s) 279, 332, 476
SduI GDGCHC 1 cut(s) 404
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 4 cut(s) 4, 68, 217, 267
SspI AATATT 2 cut(s) 366, 377
SspMI CTAG 2 cut(s) 210, 452
StyI CCWWGG 2 cut(s) 12, 381
TaaI ACNGT 2 cut(s) 305, 424
TaiI ACGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 195
TasI AATT 4 cut(s) 4, 68, 217, 267
Tru1I TTAA 2 cut(s) 35, 390
Tru9I TTAA 2 cut(s) 35, 390
TspDTI ATGAA 4 cut(s) 17, 37, 129, 183
TspGWI ACGGA 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 2 cut(s) 4, 267
XmiI GTMKAC 1 cut(s) 181
XspI CTAG 2 cut(s) 210, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.