Rorug02G0228900

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000163
Physical Location & Seq
Forward (+)
22688314 .. 22693586
5273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0228900.1

Sequence Viewer

Length: 1281 bp
ATGTCGTCCGTGGTGGGATACTTAGCTTCGTCATCGTCGTCTTCCCCGGAAGGCCATGATGAAGGCAACAACGAACGGCTCGATTTCGTTCGTCCCACGAATTCCGACTTGTCACTAATTCCCGGCGAGACATTTCTCCGAGCAGCCGTGTCCCTCAAGGATCAGGTAGTGAAGGCCACGTGGGAAGGAGAGCGGAGCTCCGGGATGGGGTTGGATCCGACTGTGTATACGGGTCTGCTCGGCACGGCGTTCACGTGCCTGAGGTCGTACGAGGCCACCGGAAACCGACAGGACTTGCTACTGTGCGCCGAGATCGCCGACAAGTGTGCGGCCGTCGCACGTGTCTCCGCCAGGCACGTGACATTTTTGTGTGGTAGAGGAGGAGTTTACGCCCTTGGAGCTGTTGTGGCTAATTTGGTTGGGGACCATCAAAGACGTGACTTGTATTTGAACCTCTTCCTTGAGGTAGCACAAGAGAAGGCCCTATCTGTTGGGCCCGAGGAAGGTGGTTTTGGAATGTCATATGATCTTCTTTATGGGAGAGCTGGGTTTCTATGGGCAGCTTTGTTCATAAACAAGCACCTTGGACAAGAGAATGTGCCCAGTGAACTTCTGATGCCCATCGTCAATGCCGTGTTGGCTGGAGGAAGGGCAGGAGCATCTGATAACCCTTCATGCCCACTTATGTACAGATGGCATGGAACAAGGTACTTGGGCGCAGCAAATGGTCTGGCTGGAATTTTGCAAGTGCTACTTCACTTCCCTCTTTCAGAAGAGGATGCAGAAGATGTGAAAGGAACTCTTAGGTATATGATGGCTAATCGGTTTCCTCACAGTGGAAATTACCCCTCAAGCGAAGGAAACCCAAGAGATAAGTTTGTGCAGTGGTCTCATGGTGCAGCCGGCATGGCCATCACCTTGTGCAAGGCATCACAGGTTTTTCCAGGAGATAGGGACTTTCGTGATGCTGCAATAGAAGCTGGAGAAGTGGTGTGGAAGAATGGTTTGCTGAAGAAGGTAGGCCTTGCTGATGGTGTGGCTGGGAATGCCTATGCCTTTCTTTCTCTTTATCGTCTAACCGGAGAGAGCATATACGAAGAGAGAGCAAATGCATTTGCAAGCTTCTTGTATCATAATGCAAGACAACTTGTGACTGCGGGGCAGACTACACATGCAGCCGAACATGCCTATTCCCTTTTTCAAGGACTTGCTGGAACTGCTTGCCTCTGGTTTGACGTGCATGTTCTTGAAAACTCGAGGTTCCCAGGTTATGAACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

426

Amino Acids

46.05

Weight (kDa)

5.66

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LANC_like PF05147 71 - 426 1.7e-87 Lanthionine synthetase C-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 227
AciI CCGC 4 cut(s) 193, 329, 348, 1157
AclWI GGATC 3 cut(s) 168, 209, 222
AcoI YGGCCR 2 cut(s) 330, 909
AcsI RAATTY 2 cut(s) 100, 738
AcuI CTGAAG 1 cut(s) 1031
AcvI CACGTG 4 cut(s) 180, 255, 341, 358
AdeI CACNNNGTG 1 cut(s) 921
AfaI GTAC 3 cut(s) 269, 689, 710
AfiI CCNNNNNNNGG 3 cut(s) 207, 503, 836
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 3 cut(s) 451, 1202, 1250
AjiI CACGTC 2 cut(s) 437, 1237
AjnI CCWGG 3 cut(s) 350, 943, 1264
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AluBI AGCT 7 cut(s) 26, 198, 401, 545, 563, 980, 1122
AluI AGCT 7 cut(s) 26, 198, 401, 545, 563, 980, 1122
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 3 cut(s) 122, 349, 894
AlwI GGATC 3 cut(s) 168, 209, 222
Ama87I CYCGRG 2 cut(s) 497, 1255
AoxI GGCC 8 cut(s) 52, 174, 273, 330, 480, 494, 909, 1021
ApaI GGGCCC 1 cut(s) 498
ApeKI GCWGC 6 cut(s) 143, 560, 719, 899, 968, 1175
ApoI RAATTY 2 cut(s) 100, 738
Asp700I GAANNNNTTC 1 cut(s) 455
AspLEI GCGC 2 cut(s) 308, 719
AspS9I GGNCC 4 cut(s) 424, 481, 494, 495
AsuC2I CCSGG 3 cut(s) 47, 123, 202
AsuHPI GGTGA 1 cut(s) 907
AvaI CYCGRG 2 cut(s) 497, 1255
AvaII GGWCC 1 cut(s) 424
AxyI CCTNAGG 1 cut(s) 260
BaeGI GKGCMC 2 cut(s) 498, 603
BalI TGGCCA 1 cut(s) 911
BamHI GGATCC 1 cut(s) 214
BanII GRGCYC 2 cut(s) 200, 498
BbrPI CACGTG 4 cut(s) 180, 255, 341, 358
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 6 cut(s) 155, 572, 731, 911, 955, 1187
BccI CCATC 7 cut(s) 199, 435, 629, 687, 808, 920, 1025
BceAI ACGGC 5 cut(s) 92, 131, 261, 317, 617
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 3 cut(s) 352, 945, 1266
BciVI GTATCC 1 cut(s) 11
BcnI CCSGG 3 cut(s) 47, 123, 202
BcoDI GTCTC 3 cut(s) 122, 349, 894
BfmI CTRYAG 1 cut(s) 1277
BfuI GTATCC 1 cut(s) 11
BglI GCCNNNNNGGC 2 cut(s) 638, 908
BisI GCNGC 7 cut(s) 144, 330, 561, 720, 900, 969, 1176
BlsI GCNGC 7 cut(s) 145, 331, 562, 721, 901, 970, 1177
Bme1390I CCNGG 6 cut(s) 47, 123, 202, 352, 945, 1266
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 2 cut(s) 497, 1255
BmgBI CACGTC 2 cut(s) 437, 1237
BmgT120I GGNCC 4 cut(s) 424, 481, 494, 495
BmiI GGNNCC 4 cut(s) 216, 425, 496, 1262
BmrFI CCNGG 6 cut(s) 47, 123, 202, 352, 945, 1266
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 5 cut(s) 606, 668, 769, 938, 955
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 33
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpmI CTGGAG 2 cut(s) 663, 1002
BpuEI CTTGAG 3 cut(s) 140, 482, 835
BpuMI CCSGG 3 cut(s) 47, 123, 202
BsaAI YACGTR 4 cut(s) 180, 255, 341, 358
BsaBI GATNNNNATC 1 cut(s) 620
BsaI GGTCTC 1 cut(s) 894
BsaJI CCNNGG 6 cut(s) 9, 45, 394, 498, 583, 1264
BsaWI WCCGGW 2 cut(s) 278, 1079
BsaXI ACNNNNNCTCC 4 cut(s) 390, 420, 975, 1005
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 503, 836
Bse118I RCCGGY 1 cut(s) 902
Bse1I ACTGG 1 cut(s) 603
Bse21I CCTNAGG 1 cut(s) 260
Bse8I GATNNNNATC 1 cut(s) 620
BseBI CCWGG 3 cut(s) 352, 945, 1266
BseDI CCNNGG 6 cut(s) 9, 45, 394, 498, 583, 1264
BseGI GGATG 2 cut(s) 210, 784
BseJI GATNNNNATC 1 cut(s) 620
BseLI CCNNNNNNNGG 3 cut(s) 207, 503, 836
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 603
BseRI GAGGAG 2 cut(s) 393, 396
BseSI GKGCMC 2 cut(s) 498, 603
BseX3I CGGCCG 1 cut(s) 330
BseXI GCAGC 6 cut(s) 155, 572, 731, 911, 955, 1187
BseYI CCCAGC 2 cut(s) 545, 1040
BsgI GTGCAG 2 cut(s) 902, 918
Bsh1285I CGRYCG 1 cut(s) 333
BshFI GGCC 8 cut(s) 54, 176, 275, 332, 482, 496, 911, 1023
BsiEI CGRYCG 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 2 cut(s) 497, 1255
BsiSI CCGG 6 cut(s) 47, 123, 201, 279, 903, 1080
BsiWI CGTACG 1 cut(s) 267
BslFI GGGAC 4 cut(s) 78, 136, 437, 968
BslI CCNNNNNNNGG 3 cut(s) 207, 503, 836
BsmAI GTCTC 3 cut(s) 122, 349, 894
BsmFI GGGAC 4 cut(s) 78, 136, 437, 968
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 8 cut(s) 54, 176, 275, 332, 482, 496, 911, 1023
Bso31I GGTCTC 1 cut(s) 894
BsoBI CYCGRG 2 cut(s) 497, 1255
Bsp120I GGGCCC 1 cut(s) 494
Bsp1286I GDGCHC 3 cut(s) 200, 498, 603
Bsp1407I TGTACA 1 cut(s) 687
Bsp143I GATC 4 cut(s) 160, 214, 312, 526
BspACI CCGC 4 cut(s) 193, 329, 348, 1157
BspANI GGCC 8 cut(s) 54, 176, 275, 332, 482, 496, 911, 1023
BspCNI CTCAG 1 cut(s) 252
BspLI GGNNCC 4 cut(s) 216, 425, 496, 1262
BspPI GGATC 3 cut(s) 168, 209, 222
BspTNI GGTCTC 1 cut(s) 894
BsrBI CCGCTC 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 902
BsrGI TGTACA 1 cut(s) 687
BsrI ACTGG 1 cut(s) 603
BssAI RCCGGY 1 cut(s) 902
BssECI CCNNGG 6 cut(s) 9, 45, 394, 498, 583, 1264
BssMI GATC 4 cut(s) 160, 214, 312, 526
BssNAI GTATAC 1 cut(s) 228
BssT1I CCWWGG 2 cut(s) 394, 583
Bst1107I GTATAC 1 cut(s) 228
Bst2UI CCWGG 3 cut(s) 352, 945, 1266
Bst4CI ACNGT 4 cut(s) 223, 303, 836, 1278
Bst6I CTCTTC 3 cut(s) 461, 768, 1092
BstAUI TGTACA 1 cut(s) 687
BstBAI YACGTR 4 cut(s) 180, 255, 341, 358
BstC8I GCNNGC 3 cut(s) 904, 1120, 1222
BstDEI CTNAG 3 cut(s) 22, 260, 803
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 210, 784
BstHHI GCGC 2 cut(s) 308, 719
BstKTI GATC 4 cut(s) 163, 217, 315, 529
BstMAI GTCTC 3 cut(s) 122, 349, 894
BstMBI GATC 4 cut(s) 160, 214, 312, 526
BstMCI CGRYCG 1 cut(s) 333
BstNI CCWGG 3 cut(s) 352, 945, 1266
BstNSI RCATGY 3 cut(s) 1175, 1187, 1244
BstSCI CCNGG 6 cut(s) 45, 121, 200, 350, 943, 1264
BstSFI CTRYAG 1 cut(s) 1277
BstSLI GKGCMC 2 cut(s) 498, 603
BstV1I GCAGC 6 cut(s) 155, 572, 731, 911, 955, 1187
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BstZ17I GTATAC 1 cut(s) 228
BstZI CGGCCG 1 cut(s) 330
Bsu36I CCTNAGG 1 cut(s) 260
BsuI GTATCC 1 cut(s) 11
BsuRI GGCC 8 cut(s) 54, 176, 275, 332, 482, 496, 911, 1023
BtgI CCRYGG 1 cut(s) 9
BtrI CACGTC 2 cut(s) 437, 1237
BtsCI GGATG 2 cut(s) 210, 784
BtsI GCAGTG 1 cut(s) 890
BtsIMutI CAGTG 3 cut(s) 610, 841, 890
Cac8I GCNNGC 3 cut(s) 904, 1120, 1222
CfoI GCGC 2 cut(s) 308, 719
Cfr10I RCCGGY 1 cut(s) 902
Cfr13I GGNCC 4 cut(s) 424, 481, 494, 495
Csp6I GTAC 3 cut(s) 268, 688, 709
CviAII CATG 8 cut(s) 56, 675, 698, 893, 907, 1172, 1184, 1241
CviQI GTAC 3 cut(s) 268, 688, 709
DdeI CTNAG 3 cut(s) 22, 260, 803
DpnI GATC 4 cut(s) 162, 216, 314, 528
DpnII GATC 4 cut(s) 160, 214, 312, 526
DraIII CACNNNGTG 1 cut(s) 921
EaeI YGGCCR 2 cut(s) 330, 909
EagI CGGCCG 1 cut(s) 330
Eam1104I CTCTTC 3 cut(s) 461, 768, 1092
EarI CTCTTC 3 cut(s) 461, 768, 1092
EciI GGCGGA 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 198
EclXI CGGCCG 1 cut(s) 330
Eco130I CCWWGG 2 cut(s) 394, 583
Eco147I AGGCCT 1 cut(s) 1023
Eco24I GRGCYC 2 cut(s) 200, 498
Eco31I GGTCTC 1 cut(s) 894
Eco47I GGWCC 1 cut(s) 424
Eco52I CGGCCG 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 1031
Eco72I CACGTG 4 cut(s) 180, 255, 341, 358
Eco81I CCTNAGG 1 cut(s) 260
Eco88I CYCGRG 2 cut(s) 497, 1255
EcoICRI GAGCTC 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 481
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 3 cut(s) 350, 943, 1264
EcoT14I CCWWGG 2 cut(s) 394, 583
EcoT22I ATGCAT 1 cut(s) 1114
EcoT38I GRGCYC 2 cut(s) 200, 498
ErhI CCWWGG 2 cut(s) 394, 583
FaeI CATG 8 cut(s) 59, 678, 701, 896, 910, 1175, 1187, 1244
FalI AAGNNNNNCTT 4 cut(s) 738, 770, 786, 818
FaqI GGGAC 4 cut(s) 78, 136, 437, 968
FatI CATG 8 cut(s) 55, 674, 697, 892, 906, 1171, 1183, 1240
FauI CCCGC 1 cut(s) 1150
FauNDI CATATG 1 cut(s) 523
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 7 cut(s) 144, 330, 561, 720, 900, 969, 1176
FokI GGATG 2 cut(s) 217, 791
FriOI GRGCYC 2 cut(s) 200, 498
Fsp4HI GCNGC 7 cut(s) 144, 330, 561, 720, 900, 969, 1176
GlaI GCGC 2 cut(s) 307, 718
GluI GCNGC 7 cut(s) 144, 330, 561, 720, 900, 969, 1176
GsaI CCCAGC 2 cut(s) 549, 1044
GsuI CTGGAG 2 cut(s) 663, 1002
HaeIII GGCC 8 cut(s) 54, 176, 275, 332, 482, 496, 911, 1023
HapII CCGG 6 cut(s) 47, 123, 201, 279, 903, 1080
HhaI GCGC 2 cut(s) 308, 719
Hin1II CATG 8 cut(s) 59, 678, 701, 896, 910, 1175, 1187, 1244
Hin6I GCGC 2 cut(s) 306, 717
HinP1I GCGC 2 cut(s) 306, 717
HindIII AAGCTT 1 cut(s) 1120
HpaII CCGG 6 cut(s) 47, 123, 201, 279, 903, 1080
HphI GGTGA 1 cut(s) 907
Hpy166II GTNNAC 4 cut(s) 228, 252, 388, 608
Hpy188I TCNGA 6 cut(s) 106, 140, 219, 615, 664, 772
Hpy188III TCNNGA 2 cut(s) 962, 1247
Hpy8I GTNNAC 4 cut(s) 228, 252, 388, 608
Hpy99I CGWCG 2 cut(s) 40, 338
HpyCH4III ACNGT 4 cut(s) 223, 303, 836, 1278
HpyCH4IV ACGT 6 cut(s) 179, 254, 340, 357, 436, 1236
HpyF3I CTNAG 3 cut(s) 22, 260, 803
HpySE526I ACGT 6 cut(s) 179, 254, 340, 357, 436, 1236
Hsp92II CATG 8 cut(s) 59, 678, 701, 896, 910, 1175, 1187, 1244
HspAI GCGC 2 cut(s) 306, 717
KroI GCCGGC 1 cut(s) 902
KroNI GCCGGC 1 cut(s) 904
Kzo9I GATC 4 cut(s) 160, 214, 312, 526
LmnI GCTCC 4 cut(s) 195, 203, 398, 656
Lsp1109I GCAGC 6 cut(s) 155, 572, 731, 911, 955, 1187
LweI GCATC 5 cut(s) 606, 668, 769, 938, 955
MaeII ACGT 6 cut(s) 179, 254, 340, 357, 436, 1236
MaeIII GTNAC 4 cut(s) 111, 358, 437, 1150
MalI GATC 4 cut(s) 162, 216, 314, 528
MbiI CCGCTC 1 cut(s) 193
MboI GATC 4 cut(s) 160, 214, 312, 526
MboII GAAGA 8 cut(s) 33, 448, 521, 785, 797, 1009, 1024, 1109
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 3 cut(s) 200, 498, 603
MlsI TGGCCA 1 cut(s) 911
MluCI AATT 5 cut(s) 100, 117, 412, 738, 841
MluNI TGGCCA 1 cut(s) 911
MmeI TCCRAC 3 cut(s) 129, 192, 242
Mox20I TGGCCA 1 cut(s) 911
Mph1103I ATGCAT 1 cut(s) 1114
MroNI GCCGGC 1 cut(s) 902
MroXI GAANNNNTTC 1 cut(s) 455
MscI TGGCCA 1 cut(s) 911
MslI CAYNNNNRTG 1 cut(s) 367
Msp20I TGGCCA 1 cut(s) 911
MspI CCGG 6 cut(s) 47, 123, 201, 279, 903, 1080
MspR9I CCNGG 6 cut(s) 47, 123, 202, 352, 945, 1266
Mva1269I GAATGC 1 cut(s) 1051
MvaI CCWGG 3 cut(s) 352, 945, 1266
NaeI GCCGGC 1 cut(s) 904
NciI CCSGG 3 cut(s) 47, 123, 202
NdeI CATATG 1 cut(s) 523
NdeII GATC 4 cut(s) 160, 214, 312, 526
NgoMIV GCCGGC 1 cut(s) 902
NlaIII CATG 8 cut(s) 59, 678, 701, 896, 910, 1175, 1187, 1244
NlaIV GGNNCC 4 cut(s) 216, 425, 496, 1262
NmeAIII GCCGAG 2 cut(s) 219, 334
NmuCI GTSAC 4 cut(s) 111, 358, 437, 1150
NsiI ATGCAT 1 cut(s) 1114
NspI RCATGY 3 cut(s) 1175, 1187, 1244
PaeR7I CTCGAG 1 cut(s) 1255
PceI AGGCCT 1 cut(s) 1023
PcsI WCGNNNNNNNCGW 4 cut(s) 35, 78, 251, 630
PctI GAATGC 1 cut(s) 1051
PdiI GCCGGC 1 cut(s) 904
PdmI GAANNNNTTC 1 cut(s) 455
Pfl23II CGTACG 1 cut(s) 267
PfoI TCCNGGA 2 cut(s) 200, 943
PkrI GCNGC 7 cut(s) 145, 331, 562, 721, 901, 970, 1177
PmaCI CACGTG 4 cut(s) 180, 255, 341, 358
PmlI CACGTG 4 cut(s) 180, 255, 341, 358
Ppu21I YACGTR 4 cut(s) 180, 255, 341, 358
Psp124BI GAGCTC 1 cut(s) 200
Psp6I CCWGG 3 cut(s) 350, 943, 1264
PspCI CACGTG 4 cut(s) 180, 255, 341, 358
PspFI CCCAGC 2 cut(s) 545, 1040
PspGI CCWGG 3 cut(s) 350, 943, 1264
PspLI CGTACG 1 cut(s) 267
PspN4I GGNNCC 4 cut(s) 216, 425, 496, 1262
PspOMI GGGCCC 1 cut(s) 494
PspPI GGNCC 4 cut(s) 424, 481, 494, 495
PspXI VCTCGAGB 1 cut(s) 1255
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 3 cut(s) 269, 689, 710
RsaNI GTAC 3 cut(s) 268, 688, 709
RseI CAYNNNNRTG 1 cut(s) 367
SacI GAGCTC 1 cut(s) 200
SatI GCNGC 7 cut(s) 144, 330, 561, 720, 900, 969, 1176
Sau3AI GATC 4 cut(s) 160, 214, 312, 526
Sau96I GGNCC 4 cut(s) 424, 481, 494, 495
ScrFI CCNGG 6 cut(s) 47, 123, 202, 352, 945, 1266
SduI GDGCHC 3 cut(s) 200, 498, 603
SfaNI GCATC 5 cut(s) 606, 668, 769, 938, 955
SfcI CTRYAG 1 cut(s) 1277
Sfr274I CTCGAG 1 cut(s) 1255
SinI GGWCC 1 cut(s) 424
SlaI CTCGAG 1 cut(s) 1255
SmiMI CAYNNNNRTG 1 cut(s) 367
SmlI CTYRAG 4 cut(s) 155, 461, 850, 1255
SmoI CTYRAG 4 cut(s) 155, 461, 850, 1255
Sse9I AATT 5 cut(s) 100, 117, 412, 738, 841
SseBI AGGCCT 1 cut(s) 1023
SsiI CCGC 4 cut(s) 193, 329, 348, 1157
SstI GAGCTC 1 cut(s) 200
StuI AGGCCT 1 cut(s) 1023
StyD4I CCNGG 6 cut(s) 45, 121, 200, 350, 943, 1264
StyI CCWWGG 2 cut(s) 394, 583
TaaI ACNGT 4 cut(s) 223, 303, 836, 1278
TaiI ACGT 6 cut(s) 182, 257, 343, 360, 439, 1239
TaqI TCGA 2 cut(s) 81, 1256
TasI AATT 5 cut(s) 100, 117, 412, 738, 841
TatI WGTACW 1 cut(s) 687
TauI GCSGC 1 cut(s) 332
TscAI CASTG 3 cut(s) 610, 841, 890
TseFI GTSAC 4 cut(s) 111, 358, 437, 1150
TseI GCWGC 6 cut(s) 143, 560, 719, 899, 968, 1175
Tsp45I GTSAC 4 cut(s) 111, 358, 437, 1150
TspDTI ATGAA 3 cut(s) 75, 559, 663
TspRI CASTG 3 cut(s) 610, 841, 890
VpaK11BI GGWCC 1 cut(s) 424
XapI RAATTY 2 cut(s) 100, 738
XceI RCATGY 3 cut(s) 1175, 1187, 1244
XhoI CTCGAG 1 cut(s) 1255
XmiI GTMKAC 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.