Rmu_sc0000493.1_g000007

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000493.1
OG0000163
Physical Location & Seq
Reverse (-)
56452 .. 58255
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000493.1_g000007.1.cds

Sequence Viewer

Length: 951 bp
atggagccgtcgaccaagaaaccgtcaacggggatggaccaccgcttaatagccgccgggaagaactgtccccagtttctttcttttctcaagtccaagtccatcaacgatctcaactccctcgcctgcgatctcgtcacttccgttttggtcgattcacccactagagaacaagtgagaattcaagtgaattcatgggtcgagaaagagacgaaaggcctcatccctcagattcttcctcccggctcagtcaacagtgggacgagtctcatctttgcaaacgccttatacttcaaagcaacttggggcaacacgtactttaatgcatcgaagacaaaagagcatgagtttcaccttctgaatggggactcggttaagggagtgcctttcatgaccagcaagtattgtcactcaatcggtaccttagacggctttaaagtcttgagacttcctttcaggacgtatgaccatgatgacttattaagtgattgctcacgtaaccgtaaatacgaccccccgcagttctctatgttctggttgcttccggatgcaagagatgggctgccgactctggccgagagagtttgttccgaagctgggtttctagatcgccatagatcgtgtgggcgtgttagggtgggggacttcttgatcccaaagttcaaaatttcttccaggtttggagcttcggctgttctgaagaaaatggggctgggggatgtttgtaattcaatggagattgttcatgaatctgtaatagaggttgatgaaaatggcacaacagctgcagctgcaacttgtggtcaattgtattgtagcttaggcaaacactatgagcctgaagaaaaggtagactttgtggctgatcaccccttcatgtttctgataagggaaaacatgacgggaacagtgctgttcatggggcaggtgctcaatcctcttgttggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

316

Amino Acids

35.11

Weight (kDa)

7.09

Isoelectric Point (pI)

28.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 916
Acc36I ACCTGC 1 cut(s) 916
Acc65I GGTACC 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 419
AccI GTMKAC 2 cut(s) 11, 852
AccIII TCCGGA 1 cut(s) 544
AciI CCGC 3 cut(s) 43, 54, 518
AclWI GGATC 1 cut(s) 646
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 3 cut(s) 180, 190, 666
AcuI CTGAAG 2 cut(s) 719, 861
AfaI GTAC 2 cut(s) 317, 421
AfiI CCNNNNNNNGG 3 cut(s) 29, 597, 944
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 4 cut(s) 185, 295, 664, 732
AjnI CCWGG 1 cut(s) 674
AluBI AGCT 5 cut(s) 596, 686, 785, 791, 819
AluI AGCT 5 cut(s) 596, 686, 785, 791, 819
Alw21I GWGCWC 1 cut(s) 933
Alw26I GTCTC 3 cut(s) 203, 272, 439
AlwI GGATC 1 cut(s) 646
Aor13HI TCCGGA 1 cut(s) 544
AoxI GGCC 2 cut(s) 217, 573
ApeKI GCWGC 4 cut(s) 562, 785, 788, 791
ApoI RAATTY 3 cut(s) 180, 190, 666
Asp718I GGTACC 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 37
AsuC2I CCSGG 2 cut(s) 58, 243
AsuHPI GGTGA 3 cut(s) 150, 344, 860
AvaII GGWCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 933
BbvI GCAGC 4 cut(s) 549, 772, 778, 800
BccI CCATC 3 cut(s) 28, 110, 551
BceAI ACGGC 1 cut(s) 445
BciT130I CCWGG 1 cut(s) 676
BclI TGATCA 1 cut(s) 865
BcnI CCSGG 2 cut(s) 58, 243
BcoDI GTCTC 3 cut(s) 203, 272, 439
BfaI CTAG 2 cut(s) 165, 605
BfmI CTRYAG 1 cut(s) 786
BfuAI ACCTGC 1 cut(s) 916
BisI GCNGC 5 cut(s) 54, 563, 786, 789, 792
BlsI GCNGC 5 cut(s) 55, 564, 787, 790, 793
Bme1390I CCNGG 3 cut(s) 58, 243, 676
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 6, 421
BmrFI CCNGG 3 cut(s) 58, 243, 676
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 2 cut(s) 335, 538
BmuI ACTGGG 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 820
BpuEI CTTGAG 2 cut(s) 74, 463
BpuMI CCSGG 2 cut(s) 58, 243
BsaAI YACGTR 2 cut(s) 315, 497
BsaWI WCCGGW 1 cut(s) 544
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 597, 944
Bse1I ACTGG 1 cut(s) 73
BseAI TCCGGA 1 cut(s) 544
BseBI CCWGG 1 cut(s) 676
BseGI GGATG 4 cut(s) 39, 222, 553, 724
BseLI CCNNNNNNNGG 3 cut(s) 29, 597, 944
BseMII CTCAG 2 cut(s) 242, 261
BseNI ACTGG 1 cut(s) 73
BseXI GCAGC 4 cut(s) 549, 772, 778, 800
BseYI CCCAGC 2 cut(s) 596, 712
BshFI GGCC 2 cut(s) 219, 575
BshNI GGYRCC 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 933
BsiSI CCGG 3 cut(s) 57, 243, 545
BslFI GGGAC 4 cut(s) 54, 274, 380, 656
BslI CCNNNNNNNGG 3 cut(s) 29, 597, 944
BsmAI GTCTC 3 cut(s) 203, 272, 439
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 4 cut(s) 54, 274, 380, 656
BsnI GGCC 2 cut(s) 219, 575
Bsp1286I GDGCHC 1 cut(s) 933
Bsp13I TCCGGA 1 cut(s) 544
Bsp143I GATC 6 cut(s) 109, 130, 607, 617, 651, 865
BspACI CCGC 3 cut(s) 43, 54, 518
BspANI GGCC 2 cut(s) 219, 575
BspCNI CTCAG 2 cut(s) 241, 260
BspEI TCCGGA 1 cut(s) 544
BspHI TCATGA 2 cut(s) 390, 745
BspLI GGNNCC 2 cut(s) 6, 421
BspMAI CTGCAG 1 cut(s) 790
BspMI ACCTGC 1 cut(s) 916
BspPI GGATC 1 cut(s) 646
BspT107I GGYRCC 1 cut(s) 419
BsrI ACTGG 1 cut(s) 73
BssMI GATC 6 cut(s) 109, 130, 607, 617, 651, 865
Bst2UI CCWGG 1 cut(s) 676
Bst4CI ACNGT 5 cut(s) 24, 68, 257, 503, 910
BstBAI YACGTR 2 cut(s) 315, 497
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 4 cut(s) 228, 247, 424, 820
BstF5I GGATG 4 cut(s) 39, 222, 553, 724
BstKTI GATC 6 cut(s) 112, 133, 610, 620, 654, 868
BstMAI GTCTC 3 cut(s) 203, 272, 439
BstMBI GATC 6 cut(s) 109, 130, 607, 617, 651, 865
BstMWI GCNNNNNNNGC 1 cut(s) 791
BstNI CCWGG 1 cut(s) 676
BstSCI CCNGG 3 cut(s) 56, 241, 674
BstSFI CTRYAG 1 cut(s) 786
BstV1I GCAGC 4 cut(s) 549, 772, 778, 800
BstV2I GAAGAC 1 cut(s) 338
BsuRI GGCC 2 cut(s) 219, 575
BtsCI GGATG 4 cut(s) 39, 222, 553, 724
BtsIMutI CAGTG 2 cut(s) 262, 915
BveI ACCTGC 1 cut(s) 916
Cac8I GCNNGC 1 cut(s) 127
CciI TCATGA 2 cut(s) 390, 745
Cfr13I GGNCC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 316, 420
CviAII CATG 8 cut(s) 195, 344, 391, 470, 746, 877, 898, 919
CviQI GTAC 2 cut(s) 316, 420
DdeI CTNAG 4 cut(s) 228, 247, 424, 820
DpnI GATC 6 cut(s) 111, 132, 609, 619, 653, 867
DpnII GATC 6 cut(s) 109, 130, 607, 617, 651, 865
DraI TTTAAA 1 cut(s) 436
EaeI YGGCCR 1 cut(s) 573
Eco147I AGGCCT 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 2 cut(s) 719, 861
EcoRI GAATTC 2 cut(s) 180, 190
EcoRII CCWGG 1 cut(s) 674
EcoT22I ATGCAT 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 8 cut(s) 198, 347, 394, 473, 749, 880, 901, 922
FalI AAGNNNNNCTT 2 cut(s) 839, 871
FaqI GGGAC 4 cut(s) 54, 274, 380, 656
FatI CATG 8 cut(s) 194, 343, 390, 469, 745, 876, 897, 918
FauI CCCGC 1 cut(s) 525
FbaI TGATCA 1 cut(s) 865
FblI GTMKAC 2 cut(s) 11, 852
Fnu4HI GCNGC 5 cut(s) 54, 563, 786, 789, 792
FokI GGATG 4 cut(s) 46, 209, 560, 731
Fsp4HI GCNGC 5 cut(s) 54, 563, 786, 789, 792
FspBI CTAG 2 cut(s) 165, 605
GluI GCNGC 5 cut(s) 54, 563, 786, 789, 792
GsaI CCCAGC 2 cut(s) 600, 716
HaeIII GGCC 2 cut(s) 219, 575
HapII CCGG 3 cut(s) 57, 243, 545
Hin1II CATG 8 cut(s) 198, 347, 394, 473, 749, 880, 901, 922
HincII GTYRAC 3 cut(s) 12, 27, 253
HindII GTYRAC 3 cut(s) 12, 27, 253
HinfI GANTC 6 cut(s) 155, 232, 265, 368, 568, 749
HpaII CCGG 3 cut(s) 57, 243, 545
HphI GGTGA 3 cut(s) 150, 344, 860
Hpy166II GTNNAC 4 cut(s) 12, 27, 253, 853
Hpy188I TCNGA 5 cut(s) 231, 360, 592, 699, 885
Hpy188III TCNNGA 8 cut(s) 202, 391, 442, 457, 545, 605, 649, 746
Hpy8I GTNNAC 4 cut(s) 12, 27, 253, 853
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 365, 883
HpyCH4III ACNGT 5 cut(s) 24, 68, 257, 503, 910
HpyCH4IV ACGT 3 cut(s) 314, 461, 496
HpyCH4V TGCA 5 cut(s) 278, 326, 551, 788, 794
HpyF10VI GCNNNNNNNGC 1 cut(s) 791
HpyF3I CTNAG 4 cut(s) 228, 247, 424, 820
HpySE526I ACGT 3 cut(s) 314, 461, 496
Hsp92II CATG 8 cut(s) 198, 347, 394, 473, 749, 880, 901, 922
Kpn2I TCCGGA 1 cut(s) 544
KpnI GGTACC 1 cut(s) 423
Ksp22I TGATCA 1 cut(s) 865
Kzo9I GATC 6 cut(s) 109, 130, 607, 617, 651, 865
LmnI GCTCC 2 cut(s) 4, 683
Lsp1109I GCAGC 4 cut(s) 549, 772, 778, 800
LweI GCATC 2 cut(s) 335, 538
MaeI CTAG 2 cut(s) 165, 605
MaeII ACGT 3 cut(s) 314, 461, 496
MaeIII GTNAC 3 cut(s) 136, 407, 497
MalI GATC 6 cut(s) 111, 132, 609, 619, 653, 867
MboI GATC 6 cut(s) 109, 130, 607, 617, 651, 865
MboII GAAGA 6 cut(s) 73, 227, 343, 663, 712, 854
MfeI CAATTG 1 cut(s) 806
MhlI GDGCHC 1 cut(s) 933
MluCI AATT 5 cut(s) 180, 190, 666, 727, 806
MlyI GAGTC 3 cut(s) 274, 362, 562
MmeI TCCRAC 1 cut(s) 925
MnlI CCTC 6 cut(s) 131, 230, 237, 249, 754, 948
Mph1103I ATGCAT 1 cut(s) 328
MroI TCCGGA 1 cut(s) 544
MseI TTAA 5 cut(s) 47, 321, 375, 435, 482
MspA1I CMGCKG 2 cut(s) 785, 791
MspI CCGG 3 cut(s) 57, 243, 545
MspR9I CCNGG 3 cut(s) 58, 243, 676
MunI CAATTG 1 cut(s) 806
MvaI CCWGG 1 cut(s) 676
MwoI GCNNNNNNNGC 1 cut(s) 791
NciI CCSGG 2 cut(s) 58, 243
NdeII GATC 6 cut(s) 109, 130, 607, 617, 651, 865
NlaIII CATG 8 cut(s) 198, 347, 394, 473, 749, 880, 901, 922
NlaIV GGNNCC 2 cut(s) 6, 421
NmeAIII GCCGAG 1 cut(s) 601
NmuCI GTSAC 2 cut(s) 136, 407
NsiI ATGCAT 1 cut(s) 328
PagI TCATGA 2 cut(s) 390, 745
PaqCI CACCTGC 1 cut(s) 916
PceI AGGCCT 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 3 cut(s) 155, 232, 749
PkrI GCNGC 5 cut(s) 55, 564, 787, 790, 793
PleI GAGTC 3 cut(s) 273, 362, 562
PpsI GAGTC 3 cut(s) 273, 362, 562
Ppu21I YACGTR 2 cut(s) 315, 497
Psp6I CCWGG 1 cut(s) 674
PspFI CCCAGC 2 cut(s) 596, 712
PspGI CCWGG 1 cut(s) 674
PspN4I GGNNCC 2 cut(s) 6, 421
PspPI GGNCC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 790
PvuII CAGCTG 2 cut(s) 785, 791
RsaI GTAC 2 cut(s) 317, 421
RsaNI GTAC 2 cut(s) 316, 420
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 5 cut(s) 47, 321, 375, 435, 482
SatI GCNGC 5 cut(s) 54, 563, 786, 789, 792
Sau3AI GATC 6 cut(s) 109, 130, 607, 617, 651, 865
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 3 cut(s) 274, 362, 562
ScrFI CCNGG 3 cut(s) 58, 243, 676
SduI GDGCHC 1 cut(s) 933
SfaNI GCATC 2 cut(s) 335, 538
SfcI CTRYAG 1 cut(s) 786
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 89, 442
SmoI CTYRAG 2 cut(s) 89, 442
Sse9I AATT 5 cut(s) 180, 190, 666, 727, 806
SseBI AGGCCT 1 cut(s) 219
SsiI CCGC 3 cut(s) 43, 54, 518
SspMI CTAG 2 cut(s) 165, 605
StuI AGGCCT 1 cut(s) 219
StyD4I CCNGG 3 cut(s) 56, 241, 674
TaaI ACNGT 5 cut(s) 24, 68, 257, 503, 910
TaiI ACGT 3 cut(s) 317, 464, 499
TaqI TCGA 4 cut(s) 11, 153, 201, 329
TasI AATT 5 cut(s) 180, 190, 666, 727, 806
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 3 cut(s) 155, 232, 749
Tru1I TTAA 5 cut(s) 47, 321, 375, 435, 482
Tru9I TTAA 5 cut(s) 47, 321, 375, 435, 482
TscAI CASTG 2 cut(s) 262, 915
TseFI GTSAC 2 cut(s) 136, 407
TseI GCWGC 4 cut(s) 562, 785, 788, 791
Tsp45I GTSAC 2 cut(s) 136, 407
TspDTI ATGAA 7 cut(s) 183, 379, 734, 762, 783, 865, 907
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 2 cut(s) 262, 915
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 3 cut(s) 180, 190, 666
XbaI TCTAGA 1 cut(s) 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmiI GTMKAC 2 cut(s) 11, 852
XspI CTAG 2 cut(s) 165, 605
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.