RLG00000003132

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
44705711 .. 44706401
691 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003132

Sequence Viewer

Length: 453 bp
ATGACCAGTTGGAAGGAGCAGTATGTATGTGCCTTTGACGGCTTCAAAGTGTTGAGGCTTCCTTATGAACAAGGCCTAGACTACGAGAGGCGGTTCTCAATGTATGTGTTTCTTCCAAATGCAAGAGATGGACTGCCCGCTTTGGCTGAGAGAGTTTCTTCTGAGTCTGGGTTTCTAGATCGGCATATTCCCAATAAATTTCCAGTTCAGATGGTGGAAGGCAAGGCCCTATTTGTTAAAAATCTACACCACAAATCTTTCATTGAAGTTAATGAAGAAGGCACAGAAGCTGCTGCTGCAACTGCCGCTATTGTTAAATGTGGGGGATCTAGGAAACCTCCTCCTCGGATAGATTTTGAAGCAGATCACCCGTTCCTTTTTCTGATCAGAGAAGAAGTTACTGGAACAGTGCTGTTTGTTGGGCATGTCCTCAATCCCATTAAAGAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

151

Amino Acids

16.97

Weight (kDa)

6.21

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 71 - 146 5.8e-23 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 91, 138, 306
AclWI GGATC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 197
AgsI TTSAA 3 cut(s) 46, 266, 359
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
AlwI GGATC 1 cut(s) 334
AlwNI CAGNNNCTG 1 cut(s) 290
AoxI GGCC 2 cut(s) 73, 225
ApeKI GCWGC 3 cut(s) 290, 293, 296
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 359
BbvI GCAGC 3 cut(s) 277, 280, 283
BccI CCATC 2 cut(s) 122, 205
BceAI ACGGC 1 cut(s) 55
BclI TGATCA 1 cut(s) 384
BfaI CTAG 3 cut(s) 77, 176, 330
BisI GCNGC 4 cut(s) 291, 294, 297, 306
BlsI GCNGC 4 cut(s) 292, 295, 298, 307
BmgT120I GGNCC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 344
Bse1I ACTGG 3 cut(s) 6, 203, 406
BseDI CCNNGG 1 cut(s) 344
BseMII CTCAG 2 cut(s) 138, 153
BseNI ACTGG 3 cut(s) 6, 203, 406
BseRI GAGGAG 2 cut(s) 330, 333
BseXI GCAGC 3 cut(s) 277, 280, 283
BshFI GGCC 2 cut(s) 75, 227
BsnI GGCC 2 cut(s) 75, 227
Bsp143I GATC 4 cut(s) 178, 326, 364, 384
BspACI CCGC 3 cut(s) 91, 138, 306
BspANI GGCC 2 cut(s) 75, 227
BspCNI CTCAG 2 cut(s) 139, 154
BspPI GGATC 1 cut(s) 334
BsrI ACTGG 3 cut(s) 6, 203, 406
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 4 cut(s) 178, 326, 364, 384
Bst4CI ACNGT 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 147, 162
BstKTI GATC 4 cut(s) 181, 329, 367, 387
BstMBI GATC 4 cut(s) 178, 326, 364, 384
BstMWI GCNNNNNNNGC 3 cut(s) 296, 302, 305
BstNSI RCATGY 1 cut(s) 428
BstV1I GCAGC 3 cut(s) 277, 280, 283
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuRI GGCC 2 cut(s) 75, 227
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 138
CaiI CAGNNNCTG 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 226
CviAII CATG 1 cut(s) 425
CviJI RGCY 6 cut(s) 42, 58, 75, 146, 227, 290
CviKI_1 RGCY 6 cut(s) 42, 58, 75, 146, 227, 290
DdeI CTNAG 2 cut(s) 147, 162
DpnI GATC 4 cut(s) 180, 328, 366, 386
DpnII GATC 4 cut(s) 178, 326, 364, 384
Eco147I AGGCCT 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 226
FaeI CATG 1 cut(s) 428
FaiI YATR 6 cut(s) 24, 28, 66, 105, 186, 426
FatI CATG 1 cut(s) 424
FauI CCCGC 1 cut(s) 145
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 4 cut(s) 291, 294, 297, 306
Fsp4HI GCNGC 4 cut(s) 291, 294, 297, 306
FspBI CTAG 3 cut(s) 77, 176, 330
GluI GCNGC 4 cut(s) 291, 294, 297, 306
HaeIII GGCC 2 cut(s) 75, 227
Hin1II CATG 1 cut(s) 428
HinfI GANTC 1 cut(s) 164
HphI GGTGA 1 cut(s) 359
Hpy188I TCNGA 6 cut(s) 163, 210, 348, 384, 389, 452
Hpy188III TCNNGA 1 cut(s) 176
HpyAV CCTTC 3 cut(s) 7, 212, 272
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 2 cut(s) 122, 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 302, 305
HpyF3I CTNAG 2 cut(s) 147, 162
Hsp92II CATG 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 4 cut(s) 178, 326, 364, 384
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 4 cut(s) 19, 153, 216, 387
Lsp1109I GCAGC 3 cut(s) 277, 280, 283
MaeI CTAG 3 cut(s) 77, 176, 330
MaeIII GTNAC 1 cut(s) 397
MalI GATC 4 cut(s) 180, 328, 366, 386
MboI GATC 4 cut(s) 178, 326, 364, 384
MboII GAAGA 4 cut(s) 104, 150, 287, 404
MflI RGATCY 1 cut(s) 326
MluCI AATT 1 cut(s) 197
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 6 cut(s) 48, 81, 348, 351, 354, 440
MseI TTAA 4 cut(s) 237, 270, 315, 441
MwoI GCNNNNNNNGC 3 cut(s) 296, 302, 305
NdeII GATC 4 cut(s) 178, 326, 364, 384
NlaIII CATG 1 cut(s) 428
NspI RCATGY 1 cut(s) 428
PceI AGGCCT 1 cut(s) 75
PkrI GCNGC 4 cut(s) 292, 295, 298, 307
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 1 cut(s) 326
SaqAI TTAA 4 cut(s) 237, 270, 315, 441
SatI GCNGC 4 cut(s) 291, 294, 297, 306
Sau3AI GATC 4 cut(s) 178, 326, 364, 384
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 173
SetI ASST 2 cut(s) 292, 340
Sse9I AATT 1 cut(s) 197
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 3 cut(s) 91, 138, 306
SspMI CTAG 3 cut(s) 77, 176, 330
StuI AGGCCT 1 cut(s) 75
TaaI ACNGT 1 cut(s) 409
TasI AATT 1 cut(s) 197
TauI GCSGC 1 cut(s) 308
Tru1I TTAA 4 cut(s) 237, 270, 315, 441
Tru9I TTAA 4 cut(s) 237, 270, 315, 441
TscAI CASTG 1 cut(s) 414
TseI GCWGC 3 cut(s) 290, 293, 296
TspDTI ATGAA 3 cut(s) 81, 250, 288
TspRI CASTG 1 cut(s) 414
XapI RAATTY 1 cut(s) 197
XbaI TCTAGA 1 cut(s) 175
XceI RCATGY 1 cut(s) 428
XspI CTAG 3 cut(s) 77, 176, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.