Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Forward (+)

26340831 .. 26341609

Gene Structure 779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18702

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGTGATCCACGAATTTCAGTTTCAAGAAGTGCCGAGAAGGAGACTAATGGTTGCATCAAATGTATTCTTGCTTCTGGCTCAGTCAACAGCCTAACGAGGCTCATTCTCGCAAATGCATTATACTTCAAAGGAGATTGGAAGGACAGATTTGATGCATTAGGAACAAAAGAGTATGATTTTCACCTTCTCAATGGGAACTCAGTTAAGGCTCCTTTCATGACGTACAGAGTGGATAACAAGTGGAAGGCGTGTTTCTCCATGTATGTCTTTCTTCCGAATGAAAGAGATGGGTTGCCAGCTTTAGTTGAGAGATTTTCTTCAGAGTGTGGGTTCTTAGATCGGCATCTTCCTCGCAAAACAGTTGAAGTTGGATTGGAGTTGCCTTTTGTTCCTGGAGGTTTGACAGAGATGGGTGACGGCCTATATGTTTCCAGCATACAACATGGATCATTCATTGATGTTAATGATGACGGTACAGAAGCTGCTGCTGTTACGGTTGCTCTTCTTCTACTGGGTTCCTCTGGGAGTCAGGTCAGGAGCAGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

183

Amino Acids

20.06

Weight (kDa)

5.92

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	8 - 129	1.4e-19	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	2, 457
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	227, 478
AgsI	TTSAA	3 cut(s)	27, 130, 368
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	2 cut(s)	302, 485
AluI	AGCT	2 cut(s)	302, 485
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	2, 457
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	485, 488
ApoI	RAATTY	1 cut(s)	15
AsuHPI	GGTGA	2 cut(s)	176, 428
BarI	GAAGNNNNNNTAC	2 cut(s)	58, 90
BbvI	GCAGC	2 cut(s)	472, 475
BccI	CCATC	2 cut(s)	284, 406
BceAI	ACGGC	1 cut(s)	436
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	486, 489
BlsI	GCNGC	2 cut(s)	487, 490
Bme1390I	CCNGG	1 cut(s)	396
BmiI	GGNNCC	2 cut(s)	213, 520
BmrFI	CCNGG	1 cut(s)	396
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	3 cut(s)	66, 145, 355
BmuI	ACTGGG	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	396
BseJI	GATNNNNATC	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	96, 216
BseNI	ACTGG	1 cut(s)	519
BseXI	GCAGC	2 cut(s)	472, 475
BshFI	GGCC	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	7, 340, 449
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	2 cut(s)	95, 215
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	213, 520
BspPI	GGATC	2 cut(s)	2, 457
BspQI	GCTCTTC	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	519
BssMI	GATC	3 cut(s)	7, 340, 449
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	3 cut(s)	364, 476, 499
Bst6I	CTCTTC	1 cut(s)	510
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	3 cut(s)	82, 202, 337
BstKTI	GATC	3 cut(s)	10, 343, 452
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	3 cut(s)	7, 340, 449
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	394
BstV1I	GCAGC	2 cut(s)	472, 475
BsuRI	GGCC	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	300
CaiI	CAGNNNCTG	1 cut(s)	485
CciI	TCATGA	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	226, 477
CviAII	CATG	3 cut(s)	220, 262, 446
CviJI	RGCY	7 cut(s)	81, 93, 103, 212, 302, 423, 485
CviKI_1	RGCY	7 cut(s)	81, 93, 103, 212, 302, 423, 485
CviQI	GTAC	2 cut(s)	226, 477
DdeI	CTNAG	3 cut(s)	82, 202, 337
DpnI	GATC	3 cut(s)	9, 342, 451
DpnII	GATC	3 cut(s)	7, 340, 449
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	394
EcoT22I	ATGCAT	2 cut(s)	121, 160
FaeI	CATG	3 cut(s)	223, 265, 449
FaiI	YATR	9 cut(s)	124, 177, 221, 263, 267, 427, 429, 440, 447
FatI	CATG	3 cut(s)	219, 261, 445
Fnu4HI	GCNGC	2 cut(s)	486, 489
Fsp4HI	GCNGC	2 cut(s)	486, 489
GluI	GCNGC	2 cut(s)	486, 489
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	423
Hin1II	CATG	3 cut(s)	223, 265, 449
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	529
HphI	GGTGA	2 cut(s)	176, 428
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	279, 325
Hpy188III	TCNNGA	3 cut(s)	27, 220, 538
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	4 cut(s)	34, 136, 197, 241
HpyCH4III	ACNGT	3 cut(s)	364, 476, 499
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	57, 119, 158
HpyF3I	CTNAG	3 cut(s)	82, 202, 337
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	3 cut(s)	223, 265, 449
Kzo9I	GATC	3 cut(s)	7, 340, 449
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	2 cut(s)	217, 540
LpnPI	CCDG	9 cut(s)	63, 312, 381, 408, 448, 500, 510, 518, 523
Lsp1109I	GCAGC	2 cut(s)	472, 475
LweI	GCATC	3 cut(s)	66, 145, 355
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	416, 493
MalI	GATC	3 cut(s)	9, 342, 451
MboI	GATC	3 cut(s)	7, 340, 449
MboII	GAAGA	5 cut(s)	266, 312, 341, 497, 500
MluCI	AATT	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	5 cut(s)	93, 363, 392, 532, 539
Mph1103I	ATGCAT	2 cut(s)	121, 160
MseI	TTAA	2 cut(s)	207, 465
MspR9I	CCNGG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	396
NdeII	GATC	3 cut(s)	7, 340, 449
NlaIII	CATG	3 cut(s)	223, 265, 449
NlaIV	GGNNCC	2 cut(s)	213, 520
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	416
NsiI	ATGCAT	2 cut(s)	121, 160
PagI	TCATGA	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	510
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	487, 490
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	213, 520
PstNI	CAGNNNCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	227, 478
RsaNI	GTAC	2 cut(s)	226, 477
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	207, 465
SatI	GCNGC	2 cut(s)	486, 489
Sau3AI	GATC	3 cut(s)	7, 340, 449
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	1 cut(s)	396
SetI	ASST	6 cut(s)	189, 227, 304, 403, 487, 537
SfaNI	GCATC	3 cut(s)	66, 145, 355
Sse9I	AATT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	3 cut(s)	364, 476, 499
TaiI	ACGT	1 cut(s)	227
TasI	AATT	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	207, 465
Tru9I	TTAA	2 cut(s)	207, 465
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	485, 488
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	3 cut(s)	208, 297, 445
XapI	RAATTY	1 cut(s)	15
Zsp2I	ATGCAT	2 cut(s)	121, 160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.