pycom15g25490

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000163
Physical Location & Seq
Reverse (-)
19984843 .. 19985982
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g25490.3

Sequence Viewer

Length: 945 bp
ATGACAAAGCAGTTGTTTCTCACTCAAGGGGCCAAAGAGAGGAACATGCTGTACTCACCGCTGTCAATCCACATCGTGCCGAGTCTGATAGCAGCCGGTACAAAGGGTCCCACGGAGAAAGAGTTGCTCTCTTTCCTTAAGTCCAAGTCCACCGCCGACCTCAACTCCCTTGCCTCTGATATCGTCCCTCTGTCAACCCCTCTAAAGCCTTGTTTCAAAGAAGTGGTGGACAGTTTTTACAAGGCGGCTCGAAGAGAAGTCAATTTCCAGACCAATGTCGAAGAAGTGAGAATCAAAGTGAATTTGTGGGCCAAAAAGGAAACTAAGGGACCGATCACAGAGGTTCTTCCTTTTAGATCAGTTAACAACATAACGAGGCTTAACTTTGGGAATGCATTGTACTTCAAAGGAGTTTGGGATGACCAGTTTAATGCATCAAAAACAAAGAAGTACAACTTGTACTGTCTCAATGGCAAACTATCGGTTAAGGCACCTTTCATGACCAACTATCATCACCAATATGTCAAAGCCTTTGACGGCTTCAAAGTCTTAAAACTTCTACACCAAAAAGGAGAAGCTGAGAAGTGGTGTTTCTCCATGTACTTGTTTCTTCCGGATGAAAAAGATGGGCTGCCAGCTTTGGTTAAGAAGGTTTGTACTGAGCCCGGCTTCTTGGATCACCATCTTCCAAACATAAGAGTTAGAATAGTGGACTCGCCTCCTGGTGAGGTCCCTTTTGTTTCAAGTATATTTCATAAATCTTTCATCGAAGTTAATGAAAATGGAACGGAAGCTGCCGCTGTTACTTTCTCCTCAAAGGTGGTTGGGTCATGCCGCCCTTGTCATCGTCCAAAGCCGATAGACTTTGTGGTAGATCACCCATTCTTGTTTTTTTATCAGAGAGGAAACGACTGGAGCAGTGTTGTTCATCGGGTAGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

315

Amino Acids

35.53

Weight (kDa)

9.33

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 490
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 5 cut(s) 59, 153, 245, 798, 835
AclWI GGATC 1 cut(s) 684
AcsI RAATTY 1 cut(s) 301
AdeI CACNNNGTG 1 cut(s) 76
AfaI GTAC 7 cut(s) 53, 100, 401, 452, 461, 602, 658
AfiI CCNNNNNNNGG 1 cut(s) 39
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 4 cut(s) 217, 406, 544, 744
AjnI CCWGG 1 cut(s) 721
AluBI AGCT 3 cut(s) 578, 638, 794
AluI AGCT 3 cut(s) 578, 638, 794
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 1 cut(s) 684
Aor13HI TCCGGA 1 cut(s) 613
AoxI GGCC 2 cut(s) 30, 309
ApeKI GCWGC 3 cut(s) 92, 631, 794
ApoI RAATTY 1 cut(s) 301
AspS9I GGNCC 5 cut(s) 30, 107, 309, 329, 730
AsuC2I CCSGG 1 cut(s) 666
AsuHPI GGTGA 5 cut(s) 48, 506, 671, 737, 869
AvaII GGWCC 3 cut(s) 107, 329, 730
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 666
BbvI GCAGC 3 cut(s) 104, 618, 781
BccI CCATC 2 cut(s) 620, 690
BceAI ACGGC 1 cut(s) 553
BciT130I CCWGG 1 cut(s) 723
BcnI CCSGG 1 cut(s) 666
BcoDI GTCTC 1 cut(s) 470
BfrI CTTAAG 1 cut(s) 137
BisI GCNGC 6 cut(s) 93, 246, 632, 795, 798, 835
BlsI GCNGC 6 cut(s) 94, 247, 633, 796, 799, 836
Bme1390I CCNGG 2 cut(s) 666, 723
Bme18I GGWCC 3 cut(s) 107, 329, 730
BmgT120I GGNCC 5 cut(s) 30, 107, 309, 329, 730
BmiI GGNNCC 6 cut(s) 31, 108, 109, 330, 492, 732
BmrFI CCNGG 2 cut(s) 666, 723
BmsI GCATC 1 cut(s) 443
BoxI GACNNNNGTC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpmI CTGGAG 1 cut(s) 934
BpuEI CTTGAG 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 666
BsaBI GATNNNNATC 1 cut(s) 681
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 613
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 424, 917
Bse8I GATNNNNATC 1 cut(s) 681
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 1 cut(s) 723
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 424, 622
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 2 cut(s) 570, 651
BseNI ACTGG 2 cut(s) 424, 917
BseRI GAGGAG 1 cut(s) 802
BseXI GCAGC 3 cut(s) 104, 618, 781
BshFI GGCC 2 cut(s) 32, 311
BshNI GGYRCC 1 cut(s) 490
BsiSI CCGG 3 cut(s) 96, 614, 666
BslFI GGGAC 4 cut(s) 93, 170, 342, 716
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 4 cut(s) 93, 170, 342, 716
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 2 cut(s) 32, 311
Bsp1286I GDGCHC 1 cut(s) 666
Bsp13I TCCGGA 1 cut(s) 613
Bsp143I GATC 4 cut(s) 333, 356, 676, 874
BspACI CCGC 5 cut(s) 59, 153, 245, 798, 835
BspANI GGCC 2 cut(s) 32, 311
BspCNI CTCAG 2 cut(s) 571, 652
BspEI TCCGGA 1 cut(s) 613
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 6 cut(s) 31, 108, 109, 330, 492, 732
BspPI GGATC 1 cut(s) 684
BspT107I GGYRCC 1 cut(s) 490
BspTI CTTAAG 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 2 cut(s) 424, 917
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 4 cut(s) 333, 356, 676, 874
Bst2UI CCWGG 1 cut(s) 723
Bst4CI ACNGT 2 cut(s) 233, 464
Bst6I CTCTTC 1 cut(s) 247
BstAFI CTTAAG 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 3 cut(s) 324, 579, 660
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 424, 622
BstKTI GATC 4 cut(s) 336, 359, 679, 877
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 4 cut(s) 333, 356, 676, 874
BstNI CCWGG 1 cut(s) 723
BstNSI RCATGY 1 cut(s) 49
BstPAI GACNNNNGTC 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 664, 721
BstV1I GCAGC 3 cut(s) 104, 618, 781
BsuRI GGCC 2 cut(s) 32, 311
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 424, 622
BtsI GCAGTG 1 cut(s) 925
BtsIMutI CAGTG 1 cut(s) 925
Cac8I GCNNGC 1 cut(s) 636
CciI TCATGA 1 cut(s) 498
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 5 cut(s) 30, 107, 309, 329, 730
Csp6I GTAC 7 cut(s) 52, 99, 400, 451, 460, 601, 657
CviAII CATG 4 cut(s) 46, 499, 598, 831
CviQI GTAC 7 cut(s) 52, 99, 400, 451, 460, 601, 657
DdeI CTNAG 3 cut(s) 324, 579, 660
DpnI GATC 4 cut(s) 335, 358, 678, 876
DpnII GATC 4 cut(s) 333, 356, 676, 874
DraIII CACNNNGTG 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 666
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 3 cut(s) 107, 329, 730
EcoO109I RGGNCCY 2 cut(s) 107, 730
EcoRII CCWGG 1 cut(s) 721
EcoRV GATATC 1 cut(s) 181
EcoT22I ATGCAT 2 cut(s) 397, 436
EcoT38I GRGCYC 1 cut(s) 666
FaeI CATG 4 cut(s) 49, 502, 601, 834
FaiI YATR 9 cut(s) 47, 371, 500, 522, 599, 695, 749, 756, 832
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 4 cut(s) 93, 170, 342, 716
FatI CATG 4 cut(s) 45, 498, 597, 830
Fnu4HI GCNGC 6 cut(s) 93, 246, 632, 795, 798, 835
FokI GGATG 2 cut(s) 431, 629
FriOI GRGCYC 1 cut(s) 666
Fsp4HI GCNGC 6 cut(s) 93, 246, 632, 795, 798, 835
GluI GCNGC 6 cut(s) 93, 246, 632, 795, 798, 835
GsuI CTGGAG 1 cut(s) 934
HaeIII GGCC 2 cut(s) 32, 311
HapII CCGG 3 cut(s) 96, 614, 666
Hin1II CATG 4 cut(s) 49, 502, 601, 834
HincII GTYRAC 2 cut(s) 195, 364
HindII GTYRAC 2 cut(s) 195, 364
HinfI GANTC 3 cut(s) 82, 291, 713
HpaI GTTAAC 1 cut(s) 364
HpaII CCGG 3 cut(s) 96, 614, 666
HphI GGTGA 5 cut(s) 48, 506, 671, 737, 869
Hpy166II GTNNAC 5 cut(s) 150, 195, 229, 364, 712
Hpy188I TCNGA 3 cut(s) 87, 178, 900
Hpy188III TCNNGA 3 cut(s) 268, 499, 614
Hpy8I GTNNAC 5 cut(s) 150, 195, 229, 364, 712
HpyAV CCTTC 1 cut(s) 643
HpyCH4III ACNGT 2 cut(s) 233, 464
HpyCH4V TGCA 2 cut(s) 395, 434
HpyF3I CTNAG 3 cut(s) 324, 579, 660
Hsp92II CATG 4 cut(s) 49, 502, 601, 834
KflI GGGWCCC 1 cut(s) 107
Kpn2I TCCGGA 1 cut(s) 613
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 4 cut(s) 333, 356, 676, 874
LmnI GCTCC 1 cut(s) 915
LpnPI CCDG 9 cut(s) 109, 281, 437, 627, 648, 679, 708, 735, 898
Lsp1109I GCAGC 3 cut(s) 104, 618, 781
LweI GCATC 1 cut(s) 443
MaeIII GTNAC 1 cut(s) 802
MalI GATC 4 cut(s) 335, 358, 678, 876
MboI GATC 4 cut(s) 333, 356, 676, 874
MboII GAAGA 5 cut(s) 264, 293, 338, 602, 677
MhlI GDGCHC 1 cut(s) 666
MluCI AATT 2 cut(s) 262, 301
MlyI GAGTC 2 cut(s) 91, 707
Mph1103I ATGCAT 2 cut(s) 397, 436
MroI TCCGGA 1 cut(s) 613
MseI TTAA 9 cut(s) 138, 363, 381, 429, 486, 551, 645, 774, 943
MslI CAYNNNNRTG 1 cut(s) 519
MspA1I CMGCKG 2 cut(s) 61, 800
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 3 cut(s) 96, 614, 666
MspR9I CCNGG 2 cut(s) 666, 723
Mva1269I GAATGC 1 cut(s) 397
MvaI CCWGG 1 cut(s) 723
NciI CCSGG 1 cut(s) 666
NdeII GATC 4 cut(s) 333, 356, 676, 874
NlaIII CATG 4 cut(s) 49, 502, 601, 834
NlaIV GGNNCC 6 cut(s) 31, 108, 109, 330, 492, 732
NmeAIII GCCGAG 1 cut(s) 105
NsiI ATGCAT 2 cut(s) 397, 436
NspI RCATGY 1 cut(s) 49
PagI TCATGA 1 cut(s) 498
PctI GAATGC 1 cut(s) 397
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 6 cut(s) 94, 247, 633, 796, 799, 836
PleI GAGTC 2 cut(s) 90, 707
PpsI GAGTC 2 cut(s) 90, 707
PpuMI RGGWCCY 2 cut(s) 107, 730
PshAI GACNNNNGTC 1 cut(s) 275
Psp5II RGGWCCY 2 cut(s) 107, 730
Psp6I CCWGG 1 cut(s) 721
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 6 cut(s) 31, 108, 109, 330, 492, 732
PspPI GGNCC 5 cut(s) 30, 107, 309, 329, 730
PspPPI RGGWCCY 2 cut(s) 107, 730
PsrI GAACNNNNNNTAC 2 cut(s) 35, 67
RsaI GTAC 7 cut(s) 53, 100, 401, 452, 461, 602, 658
RsaNI GTAC 7 cut(s) 52, 99, 400, 451, 460, 601, 657
RseI CAYNNNNRTG 1 cut(s) 519
SaqAI TTAA 9 cut(s) 138, 363, 381, 429, 486, 551, 645, 774, 943
SatI GCNGC 6 cut(s) 93, 246, 632, 795, 798, 835
Sau3AI GATC 4 cut(s) 333, 356, 676, 874
Sau96I GGNCC 5 cut(s) 30, 107, 309, 329, 730
SchI GAGTC 2 cut(s) 91, 707
ScrFI CCNGG 2 cut(s) 666, 723
SduI GDGCHC 1 cut(s) 666
SfaNI GCATC 1 cut(s) 443
SinI GGWCC 3 cut(s) 107, 329, 730
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 2 cut(s) 24, 137
SmoI CTYRAG 2 cut(s) 24, 137
Sse9I AATT 2 cut(s) 262, 301
SsiI CCGC 5 cut(s) 59, 153, 245, 798, 835
StyD4I CCNGG 2 cut(s) 664, 721
TaaI ACNGT 2 cut(s) 233, 464
TaqI TCGA 3 cut(s) 250, 279, 768
TaqII GACCGA 1 cut(s) 346
TasI AATT 2 cut(s) 262, 301
TatI WGTACW 6 cut(s) 51, 399, 450, 459, 600, 656
TauI GCSGC 3 cut(s) 248, 800, 837
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 9 cut(s) 138, 363, 381, 429, 486, 551, 645, 774, 943
Tru9I TTAA 9 cut(s) 138, 363, 381, 429, 486, 551, 645, 774, 943
TscAI CASTG 1 cut(s) 925
TseI GCWGC 3 cut(s) 92, 631, 794
TspDTI ATGAA 6 cut(s) 487, 633, 743, 754, 792, 917
TspGWI ACGGA 2 cut(s) 128, 803
TspRI CASTG 1 cut(s) 925
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 3 cut(s) 107, 329, 730
XapI RAATTY 1 cut(s) 301
XceI RCATGY 1 cut(s) 49
Zsp2I ATGCAT 2 cut(s) 397, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.