Rroxscaffold_1G00061010

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000163
Physical Location & Seq
Forward (+)
83174023 .. 83174460
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061010.1

Sequence Viewer

Length: 438 bp
ATGGCCACGAAATCATTTCCAAAACGTCATCGGAAAAATAATTTGAATTTTCGGGGTATTACATGCCAGCTCGGCCGAGAGGGTTTGTTCGAGTATGGGTTTTTAGATCGTCATCTTCAATGGAATGAGGTTAAAGTGCGGAAATTGTTGATCCCAAAGTTTAAGATCTCATCTAGGTTTGAGGCCTCCGGTGTTATGGAGAAACTAGGGCTGCCGGCTGATGCCATGGTGATGATGCATGAAGCCTTGATTGAAGTTGATGAAAATGGCACAACAGCTGCAGCTGCTACTGTTGCCCAGTCATACCGGGCTCTTGCTCCGCCGCCTGAAGTGAAAGAAGAAGACTTTGTGGCTGACCACCCATTCATGTTTCTCATTGAAGAAGGTCGTGGAACGATGCTGTTCATGGGGCATGTGCTCAATCCACTTGCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

145

Amino Acids

16.32

Weight (kDa)

6.97

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 42 - 142 4.8e-17 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 431
AciI CCGC 3 cut(s) 139, 320, 323
AclWI GGATC 1 cut(s) 145
AcoI YGGCCR 2 cut(s) 3, 73
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 4 cut(s) 46, 119, 254, 380
AluBI AGCT 3 cut(s) 70, 278, 284
AluI AGCT 3 cut(s) 70, 278, 284
Alw21I GWGCWC 1 cut(s) 420
AlwI GGATC 1 cut(s) 145
AoxI GGCC 3 cut(s) 3, 73, 183
ApeKI GCWGC 4 cut(s) 211, 278, 281, 284
ApoI RAATTY 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 241
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 4 cut(s) 198, 265, 271, 293
BcnI CCSGG 1 cut(s) 308
BfaI CTAG 2 cut(s) 174, 206
BfmI CTRYAG 1 cut(s) 279
BglI GCCNNNNNGGC 1 cut(s) 72
BglII AGATCT 1 cut(s) 165
BisI GCNGC 5 cut(s) 212, 279, 282, 285, 323
BlsI GCNGC 5 cut(s) 213, 280, 283, 286, 324
Bme1390I CCNGG 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 308
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 3 cut(s) 211, 225, 387
BmuI ACTGGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 308
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 298
BseX3I CGGCCG 1 cut(s) 73
BseXI GCAGC 4 cut(s) 198, 265, 271, 293
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 3 cut(s) 5, 75, 185
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 3 cut(s) 189, 215, 307
BslI CCNNNNNNNGG 1 cut(s) 431
BsnI GGCC 3 cut(s) 5, 75, 185
Bsp1286I GDGCHC 2 cut(s) 313, 420
Bsp143I GATC 3 cut(s) 106, 150, 165
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 3 cut(s) 139, 320, 323
BspANI GGCC 3 cut(s) 5, 75, 185
BspMAI CTGCAG 1 cut(s) 283
BspPI GGATC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 3 cut(s) 106, 150, 165
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 292
BstC8I GCNNGC 3 cut(s) 68, 216, 433
BstDSI CCRYGG 1 cut(s) 225
BstKTI GATC 3 cut(s) 109, 153, 168
BstMBI GATC 3 cut(s) 106, 150, 165
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 72, 284, 293
BstNSI RCATGY 2 cut(s) 66, 416
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 4 cut(s) 198, 265, 271, 293
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BstZI CGGCCG 1 cut(s) 73
BsuRI GGCC 3 cut(s) 5, 75, 185
BtgI CCRYGG 1 cut(s) 225
Cac8I GCNNGC 3 cut(s) 68, 216, 433
Cfr10I RCCGGY 1 cut(s) 214
CviAII CATG 6 cut(s) 63, 226, 239, 367, 406, 413
DpnI GATC 3 cut(s) 108, 152, 167
DpnII GATC 3 cut(s) 106, 150, 165
EaeI YGGCCR 2 cut(s) 3, 73
EagI CGGCCG 1 cut(s) 73
EciI GGCGGA 1 cut(s) 309
EclXI CGGCCG 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 225
Eco147I AGGCCT 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 313
Eco52I CGGCCG 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 6 cut(s) 66, 229, 242, 370, 409, 416
FaiI YATR 9 cut(s) 64, 96, 197, 227, 240, 304, 368, 407, 414
FatI CATG 6 cut(s) 62, 225, 238, 366, 405, 412
Fnu4HI GCNGC 5 cut(s) 212, 279, 282, 285, 323
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 5 cut(s) 212, 279, 282, 285, 323
FspBI CTAG 2 cut(s) 174, 206
GluI GCNGC 5 cut(s) 212, 279, 282, 285, 323
HaeIII GGCC 3 cut(s) 5, 75, 185
HapII CCGG 3 cut(s) 189, 215, 307
Hin1II CATG 6 cut(s) 66, 229, 242, 370, 409, 416
HpaII CCGG 3 cut(s) 189, 215, 307
HphI GGTGA 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 238, 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 284, 293
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 6 cut(s) 66, 229, 242, 370, 409, 416
KroI GCCGGC 1 cut(s) 214
KroNI GCCGGC 1 cut(s) 216
Kzo9I GATC 3 cut(s) 106, 150, 165
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 7 cut(s) 80, 202, 228, 311, 320, 339, 417
Lsp1109I GCAGC 4 cut(s) 198, 265, 271, 293
LweI GCATC 3 cut(s) 211, 225, 387
MaeI CTAG 2 cut(s) 174, 206
MaeII ACGT 1 cut(s) 25
MalI GATC 3 cut(s) 108, 152, 167
MboI GATC 3 cut(s) 106, 150, 165
MboII GAAGA 4 cut(s) 107, 350, 353, 392
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 313, 420
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 40, 46, 143
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 73, 121, 175, 196
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 240
MroNI GCCGGC 1 cut(s) 214
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 132, 162
MslI CAYNNNNRTG 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 278, 284
MspI CCGG 3 cut(s) 189, 215, 307
MspR9I CCNGG 1 cut(s) 308
MwoI GCNNNNNNNGC 3 cut(s) 72, 284, 293
NaeI GCCGGC 1 cut(s) 216
NciI CCSGG 1 cut(s) 308
NcoI CCATGG 1 cut(s) 225
NdeII GATC 3 cut(s) 106, 150, 165
NgoMIV GCCGGC 1 cut(s) 214
NlaIII CATG 6 cut(s) 66, 229, 242, 370, 409, 416
NmeAIII GCCGAG 2 cut(s) 51, 101
NsiI ATGCAT 1 cut(s) 240
NspI RCATGY 2 cut(s) 66, 416
PceI AGGCCT 1 cut(s) 185
PdiI GCCGGC 1 cut(s) 216
PflMI CCANNNNNTGG 1 cut(s) 431
PkrI GCNGC 5 cut(s) 213, 280, 283, 286, 324
PstI CTGCAG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 165
PvuII CAGCTG 2 cut(s) 278, 284
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 2 cut(s) 132, 162
SatI GCNGC 5 cut(s) 212, 279, 282, 285, 323
Sau3AI GATC 3 cut(s) 106, 150, 165
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 2 cut(s) 313, 420
SetI ASST 7 cut(s) 28, 72, 132, 179, 280, 286, 388
SfaNI GCATC 3 cut(s) 211, 225, 387
SfcI CTRYAG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 3 cut(s) 40, 46, 143
SseBI AGGCCT 1 cut(s) 185
SsiI CCGC 3 cut(s) 139, 320, 323
SspMI CTAG 2 cut(s) 174, 206
StuI AGGCCT 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 90
TasI AATT 3 cut(s) 40, 46, 143
TauI GCSGC 1 cut(s) 325
Tru1I TTAA 2 cut(s) 132, 162
Tru9I TTAA 2 cut(s) 132, 162
TseI GCWGC 4 cut(s) 211, 278, 281, 284
TspDTI ATGAA 4 cut(s) 255, 276, 355, 394
Van91I CCANNNNNTGG 1 cut(s) 431
XapI RAATTY 1 cut(s) 46
XceI RCATGY 2 cut(s) 66, 416
XspI CTAG 2 cut(s) 174, 206
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.