Rroxscaffold_2G00087490

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000163
Physical Location & Seq
Reverse (-)
9535230 .. 9536855
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087490.1

Sequence Viewer

Length: 633 bp
ATGGAGGTAGCCAACCAAAAGTCTACTAAAAGTCAAAGAGTCAAAGAGTGGAGCCTATCCCGTTGGCCGGTGGAGCCTTGCAGTACTCGAATGTGCCGGAAAAACATCCTTGTAGCCACGGCGGAGGCAAACGGCCCCAAACTGCACCAGTTTCTTTCTGTCCTCAAATCCAATTCCAGCAAACACCTCAACTTCCTGGCCTACAATCTCCTCACTTCCGTTCTGGCCGATGCATCCGCCGCTGGTGGGCCATGTCTGAACTTGGCCAATGGTCTCTGGGTGGACCGATCTCACCATCTCGATGATTCGTACGTACAGGTGGTGTGCAATTATTACAAAGCAGCCCTAAAGCAAGCAGATTTTAAATCCAACCCCGATGGTGTAAGAATCGAGGTGTATTCCTGGGTCAAGCAGGAAACCAATGGCTTTATCCCTGAGATTCTTCCTCCAAACTCAGTCACCCCCAACACCTGCTTTGGTGGTTGCCACTCCATAAGTGCCTTTGACGGCTTTAAAGTCTTGAATCTTGCTTACAAAGGAAGTAGTGATTACAAGTACCATCGATGTTTCTCTATGCATTTGCTTCTTCCGGATGCAAGAGATGGGCTGCCGGCTCTGGTCGAGAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

210

Amino Acids

23.37

Weight (kDa)

8.8

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 41 - 158 4.9e-15 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 479
AccI GTMKAC 1 cut(s) 23
AccIII TCCGGA 1 cut(s) 589
AciI CCGC 3 cut(s) 122, 237, 240
AcoI YGGCCR 3 cut(s) 65, 225, 264
AfaI GTAC 4 cut(s) 85, 311, 315, 557
AfiI CCNNNNNNNGG 2 cut(s) 67, 246
AgsI TTSAA 1 cut(s) 523
AjnI CCWGG 2 cut(s) 195, 401
Alw26I GTCTC 1 cut(s) 278
Aor13HI TCCGGA 1 cut(s) 589
AoxI GGCC 6 cut(s) 65, 133, 198, 225, 248, 264
ApeKI GCWGC 2 cut(s) 341, 607
AspS9I GGNCC 3 cut(s) 134, 248, 283
AsuHPI GGTGA 2 cut(s) 284, 451
AvaII GGWCC 1 cut(s) 283
BalI TGGCCA 1 cut(s) 266
BbvI GCAGC 2 cut(s) 353, 594
BccI CCATC 4 cut(s) 303, 371, 567, 596
BceAI ACGGC 3 cut(s) 135, 148, 523
BciT130I CCWGG 2 cut(s) 197, 403
BcoDI GTCTC 1 cut(s) 278
BfuAI ACCTGC 1 cut(s) 479
BisI GCNGC 3 cut(s) 240, 342, 608
BlsI GCNGC 3 cut(s) 241, 343, 609
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 197, 403
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 3 cut(s) 134, 248, 283
BmiI GGNNCC 3 cut(s) 53, 75, 136
BmrFI CCNGG 2 cut(s) 197, 403
BmsI GCATC 3 cut(s) 220, 242, 583
Bsa29I ATCGAT 1 cut(s) 562
BsaAI YACGTR 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 117, 402
BsaWI WCCGGW 1 cut(s) 589
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 246
Bse118I RCCGGY 2 cut(s) 67, 610
Bse1I ACTGG 1 cut(s) 148
BseAI TCCGGA 1 cut(s) 589
BseBI CCWGG 2 cut(s) 197, 403
BseCI ATCGAT 1 cut(s) 562
BseDI CCNNGG 2 cut(s) 117, 402
BseGI GGATG 3 cut(s) 105, 233, 598
BseLI CCNNNNNNNGG 2 cut(s) 67, 246
BseMII CTCAG 2 cut(s) 426, 468
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 353, 594
BsgI GTGCAG 1 cut(s) 128
BshFI GGCC 6 cut(s) 67, 135, 200, 227, 250, 266
BshVI ATCGAT 1 cut(s) 562
BsiSI CCGG 4 cut(s) 68, 97, 590, 611
BsiWI CGTACG 1 cut(s) 309
BslI CCNNNNNNNGG 2 cut(s) 67, 246
BsmAI GTCTC 1 cut(s) 278
BsnI GGCC 6 cut(s) 67, 135, 200, 227, 250, 266
Bso31I GGTCTC 1 cut(s) 278
Bsp13I TCCGGA 1 cut(s) 589
Bsp143I GATC 1 cut(s) 287
BspACI CCGC 3 cut(s) 122, 237, 240
BspANI GGCC 6 cut(s) 67, 135, 200, 227, 250, 266
BspCNI CTCAG 2 cut(s) 427, 467
BspDI ATCGAT 1 cut(s) 562
BspEI TCCGGA 1 cut(s) 589
BspLI GGNNCC 3 cut(s) 53, 75, 136
BspMI ACCTGC 1 cut(s) 479
BspTNI GGTCTC 1 cut(s) 278
BsrFI RCCGGY 2 cut(s) 67, 610
BsrI ACTGG 1 cut(s) 148
BssAI RCCGGY 2 cut(s) 67, 610
BssECI CCNNGG 2 cut(s) 117, 402
BssMI GATC 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 197, 403
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 354, 612
BstDEI CTNAG 2 cut(s) 435, 454
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 3 cut(s) 105, 233, 598
BstKTI GATC 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 1 cut(s) 287
BstMWI GCNNNNNNNGC 2 cut(s) 73, 239
BstNI CCWGG 2 cut(s) 197, 403
BstSCI CCNGG 2 cut(s) 195, 401
BstSNI TACGTA 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 353, 594
Bsu15I ATCGAT 1 cut(s) 562
BsuRI GGCC 6 cut(s) 67, 135, 200, 227, 250, 266
BsuTUI ATCGAT 1 cut(s) 562
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 3 cut(s) 105, 233, 598
BveI ACCTGC 1 cut(s) 479
Cac8I GCNNGC 2 cut(s) 354, 612
Cfr10I RCCGGY 2 cut(s) 67, 610
Cfr13I GGNCC 3 cut(s) 134, 248, 283
ClaI ATCGAT 1 cut(s) 562
Csp6I GTAC 4 cut(s) 84, 310, 314, 556
CviAII CATG 1 cut(s) 252
CviQI GTAC 4 cut(s) 84, 310, 314, 556
DdeI CTNAG 2 cut(s) 435, 454
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
DraI TTTAAA 2 cut(s) 364, 514
EaeI YGGCCR 3 cut(s) 65, 225, 264
EciI GGCGGA 2 cut(s) 137, 226
Eco105I TACGTA 1 cut(s) 313
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 195, 401
EcoT22I ATGCAT 2 cut(s) 235, 579
FaeI CATG 1 cut(s) 255
FaiI YATR 3 cut(s) 253, 494, 575
FatI CATG 1 cut(s) 251
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 240, 342, 608
FokI GGATG 3 cut(s) 92, 220, 605
Fsp4HI GCNGC 3 cut(s) 240, 342, 608
GluI GCNGC 3 cut(s) 240, 342, 608
HaeIII GGCC 6 cut(s) 67, 135, 200, 227, 250, 266
HapII CCGG 4 cut(s) 68, 97, 590, 611
Hin1II CATG 1 cut(s) 255
HinfI GANTC 5 cut(s) 39, 305, 387, 439, 523
HpaII CCGG 4 cut(s) 68, 97, 590, 611
HphI GGTGA 2 cut(s) 284, 451
Hpy166II GTNNAC 2 cut(s) 24, 283
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 4 cut(s) 299, 520, 590, 622
Hpy8I GTNNAC 2 cut(s) 24, 283
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 6 cut(s) 81, 145, 233, 327, 577, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 239
HpyF3I CTNAG 2 cut(s) 435, 454
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 1 cut(s) 255
Kpn2I TCCGGA 1 cut(s) 589
KroI GCCGGC 1 cut(s) 610
KroNI GCCGGC 1 cut(s) 612
Kzo9I GATC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 51, 73
Lsp1109I GCAGC 2 cut(s) 353, 594
LweI GCATC 3 cut(s) 220, 242, 583
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 457
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 2 cut(s) 434, 578
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 2 cut(s) 172, 328
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 7 cut(s) 118, 173, 197, 221, 385, 456, 618
Mox20I TGGCCA 1 cut(s) 266
Mph1103I ATGCAT 2 cut(s) 235, 579
MroI TCCGGA 1 cut(s) 589
MroNI GCCGGC 1 cut(s) 610
MscI TGGCCA 1 cut(s) 266
MseI TTAA 2 cut(s) 363, 513
MslI CAYNNNNRTG 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 4 cut(s) 68, 97, 590, 611
MspR9I CCNGG 2 cut(s) 197, 403
MvaI CCWGG 2 cut(s) 197, 403
MwoI GCNNNNNNNGC 2 cut(s) 73, 239
NaeI GCCGGC 1 cut(s) 612
NdeII GATC 1 cut(s) 287
NgoMIV GCCGGC 1 cut(s) 610
NlaIII CATG 1 cut(s) 255
NlaIV GGNNCC 3 cut(s) 53, 75, 136
NmuCI GTSAC 1 cut(s) 457
NsiI ATGCAT 2 cut(s) 235, 579
PaqCI CACCTGC 1 cut(s) 479
PdiI GCCGGC 1 cut(s) 612
PfeI GAWTC 4 cut(s) 305, 387, 439, 523
Pfl23II CGTACG 1 cut(s) 309
PkrI GCNGC 3 cut(s) 241, 343, 609
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Ppu21I YACGTR 1 cut(s) 313
Psp6I CCWGG 2 cut(s) 195, 401
PspGI CCWGG 2 cut(s) 195, 401
PspLI CGTACG 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 53, 75, 136
PspPI GGNCC 3 cut(s) 134, 248, 283
RsaI GTAC 4 cut(s) 85, 311, 315, 557
RsaNI GTAC 4 cut(s) 84, 310, 314, 556
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 2 cut(s) 363, 513
SatI GCNGC 3 cut(s) 240, 342, 608
Sau3AI GATC 1 cut(s) 287
Sau96I GGNCC 3 cut(s) 134, 248, 283
ScaI AGTACT 1 cut(s) 85
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 2 cut(s) 197, 403
SetI ASST 6 cut(s) 9, 189, 315, 321, 396, 473
SfaNI GCATC 3 cut(s) 220, 242, 583
SinI GGWCC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 300
SnaBI TACGTA 1 cut(s) 313
Sse9I AATT 2 cut(s) 172, 328
SsiI CCGC 3 cut(s) 122, 237, 240
StyD4I CCNGG 2 cut(s) 195, 401
TaiI ACGT 1 cut(s) 315
TaqI TCGA 5 cut(s) 88, 300, 390, 562, 621
TaqII GACCGA 1 cut(s) 300
TasI AATT 2 cut(s) 172, 328
TatI WGTACW 1 cut(s) 83
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 4 cut(s) 305, 387, 439, 523
Tru1I TTAA 2 cut(s) 363, 513
Tru9I TTAA 2 cut(s) 363, 513
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 2 cut(s) 341, 607
Tsp45I GTSAC 1 cut(s) 457
TspGWI ACGGA 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 85
Zsp2I ATGCAT 2 cut(s) 235, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.