Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8360283.1

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Reverse (-)

253 .. 1078

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8360283.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 826 bp

tgcatacaaggcggctttgaatcaagttgactttaagaccaaggcagaggaaatccgatgtgaagtgaattcatgggccgaggaggagactaaaggcctcatcaaagaggttcttccccctatgtcagttgacagcacaacaaggcttatccttgctaatgcattatactttaaaggagattggactgagaagttcgacgcatcacttacaaaaacagatgatttccaccttatcgatgggaggtcagtaaaggcacccttcatgatcagctggaataaacaattcataagtgcctttgacggtttcaaagtcttaaagcttccttacgaacaaggtggagatcacattcggcgtttctccatgtatgtgtatcttccaaatgcaatagatggcctgccagctttagttgagagagtttgttcagagtctggatttgtggatcgctatcttccccgctttgcagttaaagttggtagatttttgatcccgaagtttaagctctctgctggctttgaggttaaagaagttctgcaaactttaggactagacttgccacttcatcctggaagtttgtcacagatggtggactcatctttggggctatgtatgtcttgcatacgccataaatccttcattgaagttaatgaagaaggcacagaaaccgcgactgttactgttgcctttggtttatctgactgtatctcaatccgagatccgccgatagactttgtggcagatcacccattccttttcctgatcagagaagaaacatctggagcagtgctgttcattggtcatgtcctcaatcccattgcagatcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

274

Amino Acids

30.66

Weight (kDa)

5.33

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccII	CGCG	1 cut(s)	666
AciI	CCGC	4 cut(s)	12, 455, 664, 717
AclWI	GGATC	3 cut(s)	448, 479, 708
AcsI	RAATTY	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	20, 308, 639
AjnI	CCWGG	1 cut(s)	563
AluBI	AGCT	4 cut(s)	271, 320, 402, 500
AluI	AGCT	4 cut(s)	271, 320, 402, 500
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	3 cut(s)	448, 479, 708
AlwNI	CAGNNNCTG	1 cut(s)	429
AoxI	GGCC	3 cut(s)	76, 95, 392
ApoI	RAATTY	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	732
BanI	GGYRCC	1 cut(s)	254
BccI	CCATC	3 cut(s)	231, 384, 575
BciT130I	CCWGG	1 cut(s)	565
BclI	TGATCA	2 cut(s)	265, 757
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	546
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	565
BmsI	GCATC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	796
Bsa29I	ATCGAT	1 cut(s)	235
BsaBI	GATNNNNATC	1 cut(s)	445
BsaJI	CCNNGG	2 cut(s)	40, 79
Bse3DI	GCAATG	1 cut(s)	811
Bse8I	GATNNNNATC	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	565
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	40, 79
BseGI	GGATG	1 cut(s)	560
BseJI	GATNNNNATC	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	1 cut(s)	178
BseRI	GAGGAG	2 cut(s)	96, 99
Bsh1236I	CGCG	1 cut(s)	666
BshFI	GGCC	3 cut(s)	78, 97, 394
BshNI	GGYRCC	1 cut(s)	254
BshVI	ATCGAT	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	81
BsnI	GGCC	3 cut(s)	78, 97, 394
Bsp143I	GATC	8 cut(s)	265, 341, 440, 484, 713, 737, 757, 818
BspACI	CCGC	4 cut(s)	12, 455, 664, 717
BspANI	GGCC	3 cut(s)	78, 97, 394
BspCNI	CTCAG	1 cut(s)	179
BspDI	ATCGAT	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	666
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	3 cut(s)	448, 479, 708
BspT107I	GGYRCC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	811
BssECI	CCNNGG	2 cut(s)	40, 79
BssMI	GATC	8 cut(s)	265, 341, 440, 484, 713, 737, 757, 818
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	565
Bst4CI	ACNGT	4 cut(s)	303, 671, 677, 699
BstC8I	GCNNGC	3 cut(s)	396, 400, 509
BstDEI	CTNAG	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	560
BstFNI	CGCG	1 cut(s)	666
BstKTI	GATC	8 cut(s)	268, 344, 443, 487, 716, 740, 760, 821
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	8 cut(s)	265, 341, 440, 484, 713, 737, 757, 818
BstMWI	GCNNNNNNNGC	1 cut(s)	9
BstNI	CCWGG	1 cut(s)	565
BstSCI	CCNGG	1 cut(s)	563
BstUI	CGCG	1 cut(s)	666
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	78, 97, 394
BsuTUI	ATCGAT	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	560
BtsI	GCAGTG	1 cut(s)	787
BtsIMutI	CAGTG	1 cut(s)	787
Cac8I	GCNNGC	3 cut(s)	396, 400, 509
CaiI	CAGNNNCTG	1 cut(s)	429
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	235
CseI	GACGC	1 cut(s)	207
CviAII	CATG	4 cut(s)	73, 263, 362, 798
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	8 cut(s)	267, 343, 442, 486, 715, 739, 759, 820
DpnII	GATC	8 cut(s)	265, 341, 440, 484, 713, 737, 757, 818
DraI	TTTAAA	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	706
Eco130I	CCWWGG	1 cut(s)	40
Eco147I	AGGCCT	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	563
EcoT14I	CCWWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	4 cut(s)	76, 266, 365, 801
FalI	AAGNNNNNCTT	4 cut(s)	97, 129, 243, 275
FatI	CATG	4 cut(s)	72, 262, 361, 797
FauI	CCCGC	1 cut(s)	462
FbaI	TGATCA	2 cut(s)	265, 757
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	1 cut(s)	547
Fsp4HI	GCNGC	1 cut(s)	13
FspBI	CTAG	1 cut(s)	546
GluI	GCNGC	1 cut(s)	13
GsuI	CTGGAG	1 cut(s)	796
HaeIII	GGCC	3 cut(s)	78, 97, 394
HgaI	GACGC	1 cut(s)	207
Hin1II	CATG	4 cut(s)	76, 266, 365, 801
HincII	GTYRAC	2 cut(s)	29, 131
HindII	GTYRAC	2 cut(s)	29, 131
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	3 cut(s)	20, 426, 588
HphI	GGTGA	1 cut(s)	732
Hpy166II	GTNNAC	3 cut(s)	29, 131, 587
Hpy188I	TCNGA	5 cut(s)	57, 425, 695, 711, 762
Hpy188III	TCNNGA	5 cut(s)	263, 430, 488, 755, 775
Hpy8I	GTNNAC	3 cut(s)	29, 131, 587
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	3 cut(s)	269, 641, 645
HpyCH4III	ACNGT	4 cut(s)	303, 671, 677, 699
HpyCH4V	TGCA	7 cut(s)	3, 162, 384, 462, 533, 616, 816
HpyF10VI	GCNNNNNNNGC	1 cut(s)	9
HpyF3I	CTNAG	1 cut(s)	187
Hsp92II	CATG	4 cut(s)	76, 266, 365, 801
Ksp22I	TGATCA	2 cut(s)	265, 757
Kzo9I	GATC	8 cut(s)	265, 341, 440, 484, 713, 737, 757, 818
LmnI	GCTCC	1 cut(s)	777
LpnPI	CCDG	9 cut(s)	257, 408, 412, 415, 493, 550, 577, 760, 768
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	546
MaeIII	GTNAC	2 cut(s)	574, 671
MalI	GATC	8 cut(s)	267, 343, 442, 486, 715, 739, 759, 820
MboI	GATC	8 cut(s)	265, 341, 440, 484, 713, 737, 757, 818
MboII	GAAGA	5 cut(s)	105, 366, 441, 660, 777
MflI	RGATCY	1 cut(s)	713
MluCI	AATT	2 cut(s)	68, 282
MlyI	GAGTC	2 cut(s)	435, 582
MnlI	CCTC	8 cut(s)	41, 74, 77, 101, 108, 235, 509, 813
Mph1103I	ATGCAT	1 cut(s)	164
MseI	TTAA	7 cut(s)	34, 172, 315, 466, 496, 520, 643
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	565
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	1 cut(s)	9
NdeII	GATC	8 cut(s)	265, 341, 440, 484, 713, 737, 757, 818
NlaIII	CATG	4 cut(s)	76, 266, 365, 801
NlaIV	GGNNCC	1 cut(s)	256
NmeAIII	GCCGAG	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	574
NsiI	ATGCAT	1 cut(s)	164
PagI	TCATGA	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	20
PfoI	TCCNGGA	1 cut(s)	563
PkrI	GCNGC	1 cut(s)	14
PleI	GAGTC	2 cut(s)	434, 582
PpsI	GAGTC	2 cut(s)	434, 582
Psp6I	CCWGG	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	563
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	7 cut(s)	34, 172, 315, 466, 496, 520, 643
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	8 cut(s)	265, 341, 440, 484, 713, 737, 757, 818
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	435, 582
ScrFI	CCNGG	1 cut(s)	565
SetI	ASST	9 cut(s)	112, 232, 246, 273, 322, 338, 404, 502, 520
SfaNI	GCATC	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	2 cut(s)	68, 282
SseBI	AGGCCT	1 cut(s)	97
SsiI	CCGC	4 cut(s)	12, 455, 664, 717
SspMI	CTAG	1 cut(s)	546
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	563
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	4 cut(s)	303, 671, 677, 699
TaqI	TCGA	2 cut(s)	196, 235
TasI	AATT	2 cut(s)	68, 282
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	7 cut(s)	34, 172, 315, 466, 496, 520, 643
Tru9I	TTAA	7 cut(s)	34, 172, 315, 466, 496, 520, 643
TscAI	CASTG	1 cut(s)	787
TseFI	GTSAC	1 cut(s)	574
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	7 cut(s)	61, 251, 275, 549, 623, 661, 779
TspRI	CASTG	1 cut(s)	787
XapI	RAATTY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	234
XspI	CTAG	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.