RchiOBHm_Chr2g0163171

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000163
Physical Location & Seq
Forward (+)
78776077 .. 78776473
397 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53136

Sequence Viewer

Length: 333 bp
ATGGTGTACTCGCCCATATCTATCCACATGGTCCTAAGCCTTGTATCCACGGCGGAGGCAAACAGCCCCAAACTGCACCAGTTTCTTTCTGTCCTCAAATCCAATTCCAGCAACCACCTCAACTTCCTGGCCTACAATCTCCTCACTTCCGTTCTGGCCGATGCATCCGCCGCTGGTGGGTCATGTCTGAACTTGGTCAATGGTCTCTGGGTGGACCGATCTCACCAGCTCGATGATTCGTACGTACAGGTGGTGTGCAATTATTACAAAGCAGCACTAAAGCAAGCAGATTTTAAATCCAACCCCGATGGTGTAAGAATCGAGGTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

110

Amino Acids

12.0

Weight (kDa)

6.38

Isoelectric Point (pI)

27.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 1 - 110 5.9e-13 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 53, 168, 171
AcoI YGGCCR 1 cut(s) 156
AfaI GTAC 3 cut(s) 8, 242, 246
AfiI CCNNNNNNNGG 1 cut(s) 177
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 209
AoxI GGCC 2 cut(s) 129, 156
ApeKI GCWGC 1 cut(s) 272
AspS9I GGNCC 2 cut(s) 31, 214
AsuHPI GGTGA 1 cut(s) 215
AvaII GGWCC 2 cut(s) 31, 214
BbvI GCAGC 1 cut(s) 284
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 128
BciVI GTATCC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 209
BfuI GTATCC 1 cut(s) 55
BisI GCNGC 2 cut(s) 171, 273
BlsI GCNGC 2 cut(s) 172, 274
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 2 cut(s) 31, 214
BmgT120I GGNCC 2 cut(s) 31, 214
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 2 cut(s) 151, 173
Bpu10I CCTNAGC 1 cut(s) 35
BsaAI YACGTR 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 59
BshFI GGCC 2 cut(s) 131, 158
BsiWI CGTACG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 2 cut(s) 131, 158
Bso31I GGTCTC 1 cut(s) 209
Bsp143I GATC 1 cut(s) 218
BspACI CCGC 3 cut(s) 53, 168, 171
BspANI GGCC 2 cut(s) 131, 158
BspTNI GGTCTC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 164
BstKTI GATC 1 cut(s) 221
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 218
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstSNI TACGTA 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 284
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 2 cut(s) 131, 158
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 31, 214
Csp6I GTAC 3 cut(s) 7, 241, 245
CviAII CATG 2 cut(s) 28, 183
CviJI RGCY 5 cut(s) 39, 66, 131, 158, 229
CviKI_1 RGCY 5 cut(s) 39, 66, 131, 158, 229
CviQI GTAC 3 cut(s) 7, 241, 245
DdeI CTNAG 1 cut(s) 35
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
DraI TTTAAA 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 156
EciI GGCGGA 2 cut(s) 68, 157
Eco105I TACGTA 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 2 cut(s) 31, 214
EcoRII CCWGG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 166
FaeI CATG 2 cut(s) 31, 186
FaiI YATR 3 cut(s) 17, 29, 184
FatI CATG 2 cut(s) 27, 182
Fnu4HI GCNGC 2 cut(s) 171, 273
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 2 cut(s) 171, 273
GluI GCNGC 2 cut(s) 171, 273
HaeIII GGCC 2 cut(s) 131, 158
Hin1II CATG 2 cut(s) 31, 186
HinfI GANTC 2 cut(s) 236, 318
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 2 cut(s) 7, 214
Hpy188I TCNGA 1 cut(s) 189
Hpy8I GTNNAC 2 cut(s) 7, 214
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 3 cut(s) 76, 164, 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 2 cut(s) 31, 186
Kzo9I GATC 1 cut(s) 218
LpnPI CCDG 9 cut(s) 92, 113, 121, 140, 140, 159, 193, 233, 239
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 2 cut(s) 151, 173
MaeII ACGT 1 cut(s) 243
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MluCI AATT 3 cut(s) 103, 259, 328
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 5 cut(s) 49, 104, 128, 152, 316
Mph1103I ATGCAT 1 cut(s) 166
MseI TTAA 2 cut(s) 294, 331
MspA1I CMGCKG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 1 cut(s) 218
NlaIII CATG 2 cut(s) 31, 186
NsiI ATGCAT 1 cut(s) 166
PfeI GAWTC 2 cut(s) 236, 318
Pfl23II CGTACG 1 cut(s) 240
PkrI GCNGC 2 cut(s) 172, 274
Ppu21I YACGTR 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspLI CGTACG 1 cut(s) 240
PspPI GGNCC 2 cut(s) 31, 214
RsaI GTAC 3 cut(s) 8, 242, 246
RsaNI GTAC 3 cut(s) 7, 241, 245
SaqAI TTAA 2 cut(s) 294, 331
SatI GCNGC 2 cut(s) 171, 273
Sau3AI GATC 1 cut(s) 218
Sau96I GGNCC 2 cut(s) 31, 214
ScrFI CCNGG 1 cut(s) 128
SetI ASST 5 cut(s) 120, 231, 246, 252, 327
SfaNI GCATC 2 cut(s) 151, 173
SinI GGWCC 2 cut(s) 31, 214
SnaBI TACGTA 1 cut(s) 244
Sse9I AATT 3 cut(s) 103, 259, 328
SsiI CCGC 3 cut(s) 53, 168, 171
StyD4I CCNGG 1 cut(s) 126
TaiI ACGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 231, 321
TaqII GACCGA 1 cut(s) 231
TasI AATT 3 cut(s) 103, 259, 328
TatI WGTACW 1 cut(s) 6
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 2 cut(s) 236, 318
Tru1I TTAA 2 cut(s) 294, 331
Tru9I TTAA 2 cut(s) 294, 331
TseI GCWGC 1 cut(s) 272
TspGWI ACGGA 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 31, 214
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.