Prupe.5G042200_v2.0.a1

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000163
Physical Location & Seq
Reverse (-)
4660735 .. 4661271
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G042200.1

Sequence Viewer

Length: 537 bp
ATGAGGCACCTGTTTCTAGCTGAAGCCAAGGGGCAGAACATGGTGTTCTCGCCGCTCTCCATCCATGTTGTGTTAAGCATGATAGCAGCTAGCACAAAGGGTCCAACCCAAGACGAGTTACTCTCTTCCCTAAAGTCCATGTCCACCGGAGAACTCAACTCCCTAGCCTCCAATCTCATCTCTTTCGTGTTTGCTGACGGCTCCCCCAGCGGCAGTCCCTGCCTGTCCTTCGCGAATGGCGTTTGGGTCGACAAGTCTCTCCCTCTCAAGCCCTCTTTCAAAGAGGTGGTGGATACTTTTTACAAAGCGGCTCAAAAGCATGTTGATTTCCAGAACAAGGCTGAAGAAGCAAGAGCTGAAGTCAACTCATGGGCTGAAAAGGAGACTAAGGGCGTTATTAGAAAAGTACTTCCTCCGCAGGCAGTTGACAGCTCAACAAGGGTCATCTTTGCAAATGCATTATTGTGGGAGCATATATTTTCGTCTCCAATCAGGGCACGCCACGTGGAAAAGAAGATTATCTCTTTAATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

179

Amino Acids

19.55

Weight (kDa)

9.04

Isoelectric Point (pI)

32.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 6
AccBSI CCGCTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 233
AciI CCGC 4 cut(s) 53, 210, 308, 416
AcuI CTGAAG 3 cut(s) 42, 363, 378
AcvI CACGTG 1 cut(s) 505
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 1 cut(s) 280
AluBI AGCT 4 cut(s) 20, 89, 356, 432
AluI AGCT 4 cut(s) 20, 89, 356, 432
Alw26I GTCTC 3 cut(s) 261, 377, 489
AlwNI CAGNNNCTG 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 86
AseI ATTAAT 1 cut(s) 531
AspS9I GGNCC 1 cut(s) 101
AsuNHI GCTAGC 1 cut(s) 89
AvaII GGWCC 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 499
BanI GGYRCC 1 cut(s) 6
BbrPI CACGTG 1 cut(s) 505
BbvI GCAGC 1 cut(s) 98
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 214
BciVI GTATCC 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 261, 377, 489
BfaI CTAG 3 cut(s) 17, 90, 164
BfuI GTATCC 1 cut(s) 286
BisI GCNGC 4 cut(s) 53, 87, 211, 309
BlsI GCNGC 4 cut(s) 54, 88, 212, 310
BmcAI AGTACT 1 cut(s) 408
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 3 cut(s) 8, 102, 202
BmtI GCTAGC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 107, 139
BpuEI CTTGAG 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 337
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 1 cut(s) 98
BseYI CCCAGC 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 6
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 3 cut(s) 261, 377, 489
BsmBI CGTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 499
Bsp68I TCGCGA 1 cut(s) 233
BspACI CCGC 4 cut(s) 53, 210, 308, 416
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 3 cut(s) 8, 102, 202
BspOI GCTAGC 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 6
BsrBI CCGCTC 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 130
BstAPI GCANNNNNTGC 1 cut(s) 219
BstBAI YACGTR 1 cut(s) 505
BstC8I GCNNGC 3 cut(s) 91, 420, 499
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 233
BstMAI GTCTC 3 cut(s) 261, 377, 489
BstMWI GCNNNNNNNGC 3 cut(s) 207, 219, 347
BstNSI RCATGY 1 cut(s) 323
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 98
BsuI GTATCC 1 cut(s) 286
BtsCI GGATG 1 cut(s) 60
BtuMI TCGCGA 1 cut(s) 233
Cac8I GCNNGC 3 cut(s) 91, 420, 499
CaiI CAGNNNCTG 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 407
CviAII CATG 6 cut(s) 40, 65, 79, 139, 320, 369
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 1 cut(s) 387
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 3 cut(s) 42, 363, 378
Eco72I CACGTG 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 27
EcoT22I ATGCAT 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 6 cut(s) 43, 68, 82, 142, 323, 372
FaiI YATR 8 cut(s) 41, 66, 80, 140, 321, 370, 474, 476
FaqI GGGAC 1 cut(s) 201
FatI CATG 6 cut(s) 39, 64, 78, 138, 319, 368
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 4 cut(s) 53, 87, 211, 309
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 4 cut(s) 53, 87, 211, 309
FspBI CTAG 3 cut(s) 17, 90, 164
GluI GCNGC 4 cut(s) 53, 87, 211, 309
GsaI CCCAGC 1 cut(s) 210
HapII CCGG 1 cut(s) 147
Hin1II CATG 6 cut(s) 43, 68, 82, 142, 323, 372
HincII GTYRAC 3 cut(s) 250, 364, 427
HindII GTYRAC 3 cut(s) 250, 364, 427
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 4 cut(s) 144, 250, 364, 427
Hpy188III TCNNGA 2 cut(s) 232, 331
Hpy8I GTNNAC 4 cut(s) 144, 250, 364, 427
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 2 cut(s) 452, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 207, 219, 347
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 6 cut(s) 43, 68, 82, 142, 323, 372
LmnI GCTCC 2 cut(s) 206, 469
LpnPI CCDG 8 cut(s) 23, 160, 220, 232, 236, 344, 404, 478
Lsp1109I GCAGC 1 cut(s) 98
MaeI CTAG 3 cut(s) 17, 90, 164
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 117
MbiI CCGCTC 1 cut(s) 55
MboII GAAGA 3 cut(s) 117, 356, 526
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 2 cut(s) 528, 532
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 5 cut(s) 178, 273, 277, 283, 423
Mph1103I ATGCAT 1 cut(s) 460
MseI TTAA 4 cut(s) 74, 527, 531, 535
MslI CAYNNNNRTG 1 cut(s) 463
MspA1I CMGCKG 1 cut(s) 210
MspI CCGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 3 cut(s) 207, 219, 347
NheI GCTAGC 1 cut(s) 89
NlaIII CATG 6 cut(s) 43, 68, 82, 142, 323, 372
NlaIV GGNNCC 3 cut(s) 8, 102, 202
NruI TCGCGA 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 460
NspI RCATGY 1 cut(s) 323
PacI TTAATTAA 2 cut(s) 531, 535
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PkrI GCNGC 4 cut(s) 54, 88, 212, 310
PmaCI CACGTG 1 cut(s) 505
PmlI CACGTG 1 cut(s) 505
Ppu21I YACGTR 1 cut(s) 505
PshBI ATTAAT 1 cut(s) 531
PspCI CACGTG 1 cut(s) 505
PspFI CCCAGC 1 cut(s) 206
PspN4I GGNNCC 3 cut(s) 8, 102, 202
PspPI GGNCC 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 219
RruI TCGCGA 1 cut(s) 233
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
RseI CAYNNNNRTG 1 cut(s) 463
SalI GTCGAC 1 cut(s) 248
SaqAI TTAA 4 cut(s) 74, 527, 531, 535
SatI GCNGC 4 cut(s) 53, 87, 211, 309
Sau96I GGNCC 1 cut(s) 101
ScaI AGTACT 1 cut(s) 408
SduI GDGCHC 1 cut(s) 499
SetI ASST 7 cut(s) 12, 22, 91, 288, 358, 434, 507
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 463
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 2 cut(s) 528, 532
SsiI CCGC 4 cut(s) 53, 210, 308, 416
SspMI CTAG 3 cut(s) 17, 90, 164
StyI CCWWGG 1 cut(s) 27
TaiI ACGT 1 cut(s) 507
TaqI TCGA 1 cut(s) 249
TasI AATT 2 cut(s) 528, 532
TatI WGTACW 1 cut(s) 406
TauI GCSGC 3 cut(s) 55, 213, 311
Tru1I TTAA 4 cut(s) 74, 527, 531, 535
Tru9I TTAA 4 cut(s) 74, 527, 531, 535
TseI GCWGC 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 101
VspI ATTAAT 1 cut(s) 531
XceI RCATGY 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 3 cut(s) 17, 90, 164
ZrmI AGTACT 1 cut(s) 408
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.