FvH4_1g24640

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000163
Physical Location & Seq
Forward (+)
16447406 .. 16448762
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24640.t1

Sequence Viewer

Length: 876 bp
ATGGATTACAAATATCTCGAAGCCTTCCAAACACCCATCAGCCACCAAACCGATGTGGCCCTCAAGATAGCAAAACAACTCCTTGATTCTGAGTTCAAGGGCAAGAACATGATCTACTCCCCTCTATCCATCCACATCGTTCTCAGCTTAATCGCCGCCCGCACAAACAATCCCCACTTCGTTTCTTTTCTCAACTCAAAGTCCATCGACGACCTCAACTCCCTAGCCTACAATCTTGTCACGTCCGTTTTGGCCGACACACCAAGCAGAGGCGGACCACGTTTGAACTTCACAAACGGTCTCTGGGTCGACGAGTATACTCCTCTTGAGGAATCATACAAAAAAGTTTTGTTGGATTTATACAAGGCGGCTCTAAACGAAGTTGATTTCAAAACCGATCCGGAAAAGGTGAGAATCCAAGTGAACTCATGGGTTGAGAAAGAGACCAGAGGACTTACCCCTGAGATTCTTCCTCCTGGCTCAGTCCACAGTGCCACGGGTCTCATATTCGCAAATGCCTTGTATTTCAAGGCAACTTGGAACGACGGTTACTTCTATAAACCACCAAAGTCGGAAGACCTTAAGTTTTATCTTCTGAACGGAGAGTCAGTGAAGGGAGTGCCTTACATGACTAGTAGCCATGAACACTTTATCGCTGTCTTTGACGACTTTAAAGTCTTCATTACAGGGACTGTGCTCTGGAGGACTTTGACAATGGGACATATAAACACGACCCTCGATCTTTCTCTATGTTGTGGCTACTTCCTGATGCAAGAGATGGGCTACCGGCTCTGGCTGAGAGAGTTTGTTCCGAGTCCGGGTTTCTGGACCGCCATCTTAATCTTAAATTTGAGAGTTTTACTTGGGTTAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

292

Amino Acids

33.05

Weight (kDa)

6.17

Isoelectric Point (pI)

24.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 15 - 222 7.9e-35 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 674
AccI GTMKAC 2 cut(s) 309, 317
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 5 cut(s) 156, 160, 273, 368, 831
AclWI GGATC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 847
AfiI CCNNNNNNNGG 2 cut(s) 269, 818
AflII CTTAAG 1 cut(s) 581
AgsI TTSAA 4 cut(s) 97, 286, 391, 529
AhlI ACTAGT 1 cut(s) 632
AjiI CACGTC 1 cut(s) 243
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw21I GWGCWC 1 cut(s) 699
Alw26I GTCTC 3 cut(s) 305, 437, 506
AlwI GGATC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 692
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 2 cut(s) 57, 252
ApoI RAATTY 1 cut(s) 847
AspS9I GGNCC 3 cut(s) 58, 275, 828
AsuC2I CCSGG 1 cut(s) 819
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 2 cut(s) 275, 828
BbsI GAAGAC 2 cut(s) 582, 670
Bbv12I GWGCWC 1 cut(s) 699
BccI CCATC 5 cut(s) 44, 137, 212, 772, 842
BciT130I CCWGG 1 cut(s) 477
BcnI CCSGG 1 cut(s) 819
BcoDI GTCTC 3 cut(s) 305, 437, 506
BcuI ACTAGT 1 cut(s) 632
BfaI CTAG 2 cut(s) 224, 633
BfrI CTTAAG 1 cut(s) 581
BisI GCNGC 2 cut(s) 156, 369
BlsI GCNGC 2 cut(s) 157, 370
Bme1390I CCNGG 2 cut(s) 477, 819
Bme18I GGWCC 2 cut(s) 275, 828
BmgBI CACGTC 1 cut(s) 243
BmgT120I GGNCC 3 cut(s) 58, 275, 828
BmrFI CCNGG 2 cut(s) 477, 819
BmsI GCATC 1 cut(s) 759
BpiI GAAGAC 2 cut(s) 582, 670
BpmI CTGGAG 1 cut(s) 721
BpuEI CTTGAG 2 cut(s) 47, 347
BpuMI CCSGG 1 cut(s) 819
BsaI GGTCTC 3 cut(s) 305, 437, 506
BsaJI CCNNGG 1 cut(s) 495
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 4 cut(s) 203, 233, 594, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 818
Bse118I RCCGGY 1 cut(s) 786
BseAI TCCGGA 1 cut(s) 400
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 269, 818
BseMII CTCAG 5 cut(s) 81, 157, 453, 495, 788
BseRI GAGGAG 1 cut(s) 312
BshFI GGCC 2 cut(s) 59, 254
BsiHKAI GWGCWC 1 cut(s) 699
BsiSI CCGG 3 cut(s) 401, 787, 818
BslFI GGGAC 2 cut(s) 703, 732
BslI CCNNNNNNNGG 2 cut(s) 269, 818
BsmAI GTCTC 3 cut(s) 305, 437, 506
BsmFI GGGAC 2 cut(s) 703, 732
BsnI GGCC 2 cut(s) 59, 254
Bso31I GGTCTC 3 cut(s) 305, 437, 506
Bsp1286I GDGCHC 1 cut(s) 699
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 3 cut(s) 111, 397, 739
BspACI CCGC 5 cut(s) 156, 160, 273, 368, 831
BspANI GGCC 2 cut(s) 59, 254
BspCNI CTCAG 5 cut(s) 82, 156, 454, 494, 789
BspEI TCCGGA 1 cut(s) 400
BspPI GGATC 1 cut(s) 392
BspTI CTTAAG 1 cut(s) 581
BspTNI GGTCTC 3 cut(s) 305, 437, 506
BsrFI RCCGGY 1 cut(s) 786
BssAI RCCGGY 1 cut(s) 786
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 3 cut(s) 111, 397, 739
BssNAI GTATAC 1 cut(s) 318
Bst1107I GTATAC 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 4 cut(s) 299, 491, 548, 694
BstAFI CTTAAG 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 5 cut(s) 90, 143, 462, 481, 797
BstDSI CCRYGG 1 cut(s) 495
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 3 cut(s) 114, 400, 742
BstMAI GTCTC 3 cut(s) 305, 437, 506
BstMBI GATC 3 cut(s) 111, 397, 739
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 2 cut(s) 475, 817
BstV2I GAAGAC 2 cut(s) 582, 670
BstZ17I GTATAC 1 cut(s) 318
BsuRI GGCC 2 cut(s) 59, 254
BtgI CCRYGG 1 cut(s) 495
BtrI CACGTC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 496, 615
Cac8I GCNNGC 1 cut(s) 160
CaiI CAGNNNCTG 1 cut(s) 692
Cfr10I RCCGGY 1 cut(s) 786
Cfr13I GGNCC 3 cut(s) 58, 275, 828
CviAII CATG 4 cut(s) 109, 429, 628, 641
DdeI CTNAG 5 cut(s) 90, 143, 462, 481, 797
DpnI GATC 3 cut(s) 113, 399, 741
DpnII GATC 3 cut(s) 111, 397, 739
DraI TTTAAA 1 cut(s) 673
DrdI GACNNNNNNGTC 1 cut(s) 674
DseDI GACNNNNNNGTC 1 cut(s) 674
EaeI YGGCCR 1 cut(s) 252
EciI GGCGGA 1 cut(s) 288
Eco31I GGTCTC 3 cut(s) 305, 437, 506
Eco47I GGWCC 2 cut(s) 275, 828
EcoRII CCWGG 1 cut(s) 475
FaeI CATG 4 cut(s) 112, 432, 631, 644
FaqI GGGAC 2 cut(s) 703, 732
FatI CATG 4 cut(s) 108, 428, 627, 640
FauI CCCGC 1 cut(s) 167
FblI GTMKAC 2 cut(s) 309, 317
Fnu4HI GCNGC 2 cut(s) 156, 369
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 156, 369
FspBI CTAG 2 cut(s) 224, 633
GluI GCNGC 2 cut(s) 156, 369
GsuI CTGGAG 1 cut(s) 721
HaeIII GGCC 2 cut(s) 59, 254
HapII CCGG 3 cut(s) 401, 787, 818
Hin1II CATG 4 cut(s) 112, 432, 631, 644
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 6 cut(s) 86, 332, 414, 466, 605, 814
HpaII CCGG 3 cut(s) 401, 787, 818
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 4 cut(s) 310, 318, 424, 487
Hpy188I TCNGA 4 cut(s) 91, 574, 597, 813
Hpy188III TCNNGA 7 cut(s) 17, 64, 326, 401, 700, 766, 826
Hpy8I GTNNAC 4 cut(s) 310, 318, 424, 487
Hpy99I CGWCG 3 cut(s) 212, 314, 548
HpyAV CCTTC 2 cut(s) 34, 607
HpyCH4III ACNGT 4 cut(s) 299, 491, 548, 694
HpyCH4IV ACGT 2 cut(s) 242, 280
HpyCH4V TGCA 1 cut(s) 772
HpyF3I CTNAG 5 cut(s) 90, 143, 462, 481, 797
HpySE526I ACGT 2 cut(s) 242, 280
Hsp92II CATG 4 cut(s) 112, 432, 631, 644
Kpn2I TCCGGA 1 cut(s) 400
Kzo9I GATC 3 cut(s) 111, 397, 739
LweI GCATC 1 cut(s) 759
MaeI CTAG 2 cut(s) 224, 633
MaeII ACGT 2 cut(s) 242, 280
MaeIII GTNAC 2 cut(s) 238, 548
MalI GATC 3 cut(s) 113, 399, 741
MboI GATC 3 cut(s) 111, 397, 739
MboII GAAGA 4 cut(s) 461, 584, 587, 670
MhlI GDGCHC 1 cut(s) 699
MluCI AATT 1 cut(s) 847
MlyI GAGTC 2 cut(s) 614, 823
MmeI TCCRAC 2 cut(s) 333, 552
MroI TCCGGA 1 cut(s) 400
MseI TTAA 5 cut(s) 149, 582, 672, 839, 845
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 3 cut(s) 401, 787, 818
MspR9I CCNGG 2 cut(s) 477, 819
MvaI CCWGG 1 cut(s) 477
NciI CCSGG 1 cut(s) 819
NdeII GATC 3 cut(s) 111, 397, 739
NlaIII CATG 4 cut(s) 112, 432, 631, 644
NmuCI GTSAC 1 cut(s) 238
PfeI GAWTC 4 cut(s) 86, 332, 414, 466
PkrI GCNGC 2 cut(s) 157, 370
PleI GAGTC 2 cut(s) 613, 822
PpsI GAGTC 2 cut(s) 613, 822
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspPI GGNCC 3 cut(s) 58, 275, 828
PsrI GAACNNNNNNTAC 4 cut(s) 98, 130, 533, 565
PstNI CAGNNNCTG 1 cut(s) 692
SalI GTCGAC 1 cut(s) 308
SaqAI TTAA 5 cut(s) 149, 582, 672, 839, 845
SatI GCNGC 2 cut(s) 156, 369
Sau3AI GATC 3 cut(s) 111, 397, 739
Sau96I GGNCC 3 cut(s) 58, 275, 828
SchI GAGTC 2 cut(s) 614, 823
ScrFI CCNGG 2 cut(s) 477, 819
SduI GDGCHC 1 cut(s) 699
SetI ASST 6 cut(s) 149, 216, 245, 283, 411, 582
SfaNI GCATC 1 cut(s) 759
SinI GGWCC 2 cut(s) 275, 828
SmlI CTYRAG 3 cut(s) 62, 326, 581
SmoI CTYRAG 3 cut(s) 62, 326, 581
SpeI ACTAGT 1 cut(s) 632
Sse9I AATT 1 cut(s) 847
SsiI CCGC 5 cut(s) 156, 160, 273, 368, 831
SspMI CTAG 2 cut(s) 224, 633
StyD4I CCNGG 2 cut(s) 475, 817
TaaI ACNGT 4 cut(s) 299, 491, 548, 694
TaiI ACGT 2 cut(s) 245, 283
TaqI TCGA 4 cut(s) 18, 207, 309, 738
TasI AATT 1 cut(s) 847
TauI GCSGC 2 cut(s) 158, 371
TfiI GAWTC 4 cut(s) 86, 332, 414, 466
Tru1I TTAA 5 cut(s) 149, 582, 672, 839, 845
Tru9I TTAA 5 cut(s) 149, 582, 672, 839, 845
TscAI CASTG 2 cut(s) 496, 615
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 657, 670
TspGWI ACGGA 2 cut(s) 235, 615
TspRI CASTG 2 cut(s) 496, 615
Vha464I CTTAAG 1 cut(s) 581
VpaK11BI GGWCC 2 cut(s) 275, 828
XapI RAATTY 1 cut(s) 847
XmiI GTMKAC 2 cut(s) 309, 317
XspI CTAG 2 cut(s) 224, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.