Rroxscaffold_1G00061000

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
83170704 .. 83171147
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061000.1

Sequence Viewer

Length: 444 bp
ATGGTGTACTCCCCGATATCTATCCGCATCGTGCCGAGTCTAATAGCAGCGGGAAAACTAGTTCCAATCGGACCGGTTCTGTCTTTCCTCAAGTCCAACTCCGTCGACGACCTCAACTCCCTCGCCTACAATCTCGTAACTTCCATTTTGGCGGATGCATCCCGCCGGTCCGGGCCATGTTTGAACTTCGCCAATGGTCTGCGGGTCGACGAGTCTCTCCCACCGGATCATTCTTACGAGAAGGTTCTATCCACTTCCTACAAGGCGGCTCTAAACCACGTCGATTTCAAATCCAACCCCGAGGGAGTGAGAACCCAAGTGAATTCTGGATCAACAAGGAGACCAATGGCCTTATCCCGAGATTCTTTCTCGGCACTCGATCACTACTCTAACGAGTCGCATCTTCGCAAACGCCTTATATTTCAAAGCAACTTGGGACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

147

Amino Acids

16.12

Weight (kDa)

9.61

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 1 - 109 9.9e-07 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 105, 207
AciI CCGC 6 cut(s) 25, 50, 152, 163, 202, 266
AclWI GGATC 2 cut(s) 234, 337
AcsI RAATTY 1 cut(s) 322
AfaI GTAC 1 cut(s) 8
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 3 cut(s) 184, 289, 425
AhlI ACTAGT 1 cut(s) 58
AjiI CACGTC 1 cut(s) 280
AloI GAACNNNNNNTCC 2 cut(s) 45, 77
Alw26I GTCTC 2 cut(s) 219, 334
AlwI GGATC 2 cut(s) 234, 337
Ama87I CYCGRG 2 cut(s) 299, 357
AoxI GGCC 2 cut(s) 173, 348
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 322
AsiGI ACCGGT 1 cut(s) 73
AspS9I GGNCC 3 cut(s) 71, 168, 173
AsuC2I CCSGG 1 cut(s) 172
AvaI CYCGRG 2 cut(s) 299, 357
AvaII GGWCC 2 cut(s) 71, 168
BbvI GCAGC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 219, 334
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 1 cut(s) 59
BisI GCNGC 2 cut(s) 48, 267
BlsI GCNGC 2 cut(s) 49, 268
Bme1390I CCNGG 1 cut(s) 172
Bme18I GGWCC 2 cut(s) 71, 168
BmeT110I CYCGRG 2 cut(s) 299, 357
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 3 cut(s) 71, 168, 173
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 4 cut(s) 36, 145, 167, 409
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 300
BsaWI WCCGGW 2 cut(s) 73, 223
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse118I RCCGGY 2 cut(s) 73, 165
Bse8I GATNNNNATC 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 158, 160
BseJI GATNNNNATC 1 cut(s) 20
BseXI GCAGC 1 cut(s) 59
BshFI GGCC 2 cut(s) 175, 350
BshTI ACCGGT 1 cut(s) 73
BsiHKCI CYCGRG 2 cut(s) 299, 357
BsiSI CCGG 4 cut(s) 74, 166, 171, 224
BsmAI GTCTC 2 cut(s) 219, 334
BsnI GGCC 2 cut(s) 175, 350
Bso31I GGTCTC 1 cut(s) 334
BsoBI CYCGRG 2 cut(s) 299, 357
Bsp143I GATC 3 cut(s) 226, 329, 379
BspACI CCGC 6 cut(s) 25, 50, 152, 163, 202, 266
BspANI GGCC 2 cut(s) 175, 350
BspPI GGATC 2 cut(s) 234, 337
BspTNI GGTCTC 1 cut(s) 334
BsrFI RCCGGY 2 cut(s) 73, 165
BssAI RCCGGY 2 cut(s) 73, 165
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 3 cut(s) 226, 329, 379
BstF5I GGATG 2 cut(s) 158, 160
BstKTI GATC 3 cut(s) 229, 332, 382
BstMAI GTCTC 2 cut(s) 219, 334
BstMBI GATC 3 cut(s) 226, 329, 379
BstSCI CCNGG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 59
BsuRI GGCC 2 cut(s) 175, 350
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 2 cut(s) 158, 160
Cfr10I RCCGGY 2 cut(s) 73, 165
Cfr13I GGNCC 3 cut(s) 71, 168, 173
CpoI CGGWCCG 2 cut(s) 71, 168
Csp6I GTAC 1 cut(s) 7
CspAI ACCGGT 1 cut(s) 73
CspI CGGWCCG 2 cut(s) 71, 168
CviAII CATG 1 cut(s) 177
CviJI RGCY 3 cut(s) 175, 269, 350
CviKI_1 RGCY 3 cut(s) 175, 269, 350
CviQI GTAC 1 cut(s) 7
DpnI GATC 3 cut(s) 228, 331, 381
DpnII GATC 3 cut(s) 226, 329, 379
EciI GGCGGA 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 334
Eco32I GATATC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 71, 168
Eco88I CYCGRG 2 cut(s) 299, 357
EcoRI GAATTC 1 cut(s) 322
EcoRV GATATC 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 1 cut(s) 180
FaiI YATR 2 cut(s) 178, 419
FatI CATG 1 cut(s) 176
FauI CCCGC 3 cut(s) 43, 170, 195
FblI GTMKAC 2 cut(s) 105, 207
Fnu4HI GCNGC 2 cut(s) 48, 267
FokI GGATG 2 cut(s) 145, 167
Fsp4HI GCNGC 2 cut(s) 48, 267
FspBI CTAG 1 cut(s) 59
GluI GCNGC 2 cut(s) 48, 267
HaeIII GGCC 2 cut(s) 175, 350
HapII CCGG 4 cut(s) 74, 166, 171, 224
Hin1II CATG 1 cut(s) 180
HincII GTYRAC 2 cut(s) 106, 208
HindII GTYRAC 2 cut(s) 106, 208
HinfI GANTC 4 cut(s) 37, 212, 362, 395
HpaII CCGG 4 cut(s) 74, 166, 171, 224
Hpy166II GTNNAC 3 cut(s) 7, 106, 208
Hpy188I TCNGA 1 cut(s) 71
Hpy188III TCNNGA 2 cut(s) 327, 357
Hpy8I GTNNAC 3 cut(s) 7, 106, 208
Hpy99I CGWCG 4 cut(s) 107, 110, 212, 284
HpyAV CCTTC 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 180
Kzo9I GATC 3 cut(s) 226, 329, 379
LpnPI CCDG 5 cut(s) 87, 179, 184, 237, 312
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 4 cut(s) 36, 145, 167, 409
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 136
MalI GATC 3 cut(s) 228, 331, 381
MboI GATC 3 cut(s) 226, 329, 379
MboII GAAGA 1 cut(s) 395
MluCI AATT 1 cut(s) 322
MlyI GAGTC 3 cut(s) 46, 221, 404
MmeI TCCRAC 2 cut(s) 120, 318
MnlI CCTC 4 cut(s) 98, 122, 131, 295
Mph1103I ATGCAT 1 cut(s) 160
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 4 cut(s) 74, 166, 171, 224
MspR9I CCNGG 1 cut(s) 172
NciI CCSGG 1 cut(s) 172
NdeII GATC 3 cut(s) 226, 329, 379
NlaIII CATG 1 cut(s) 180
NmeAIII GCCGAG 2 cut(s) 60, 350
NsiI ATGCAT 1 cut(s) 160
PfeI GAWTC 1 cut(s) 362
PinAI ACCGGT 1 cut(s) 73
PkrI GCNGC 2 cut(s) 49, 268
PleI GAGTC 3 cut(s) 45, 220, 403
PpsI GAGTC 3 cut(s) 45, 220, 403
PspPI GGNCC 3 cut(s) 71, 168, 173
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
Rsr2I CGGWCCG 2 cut(s) 71, 168
RsrII CGGWCCG 2 cut(s) 71, 168
SalI GTCGAC 2 cut(s) 104, 206
SatI GCNGC 2 cut(s) 48, 267
Sau3AI GATC 3 cut(s) 226, 329, 379
Sau96I GGNCC 3 cut(s) 71, 168, 173
SchI GAGTC 3 cut(s) 46, 221, 404
ScrFI CCNGG 1 cut(s) 172
SetI ASST 3 cut(s) 114, 246, 282
SfaNI GCATC 4 cut(s) 36, 145, 167, 409
SgrDI CGTCGACG 1 cut(s) 104
SinI GGWCC 2 cut(s) 71, 168
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 1 cut(s) 322
SsiI CCGC 6 cut(s) 25, 50, 152, 163, 202, 266
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 170
TaiI ACGT 1 cut(s) 282
TaqI TCGA 4 cut(s) 105, 207, 282, 378
TasI AATT 1 cut(s) 322
TatI WGTACW 1 cut(s) 6
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 1 cut(s) 362
TseI GCWGC 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 91
VpaK11BI GGWCC 2 cut(s) 71, 168
XapI RAATTY 1 cut(s) 322
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XmiI GTMKAC 2 cut(s) 105, 207
XspI CTAG 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.