Rmu_co8189380.1_g000001

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8189380.1
OG0000163
Physical Location & Seq
Forward (+)
29 .. 541
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8189380.1_g000001.1.cds

Sequence Viewer

Length: 441 bp
atggagatcacaaagcaattgcttctgatcgaaggtaaggagaagaacatggtctactcaccactgtctattcacgtgttcatcagcgagcttaatgacctcgcctccaatttggtccctctggtctttgaggacggatcgccaagtggcgggcctcgcttgtcattcgccaatagcgtttgggtagaggaatctgcctctatcaagacttctttcaaagaagtggtggacttttcttacaaggcagccttgaaacaagtagatttcaaggccaaatatgaaaaagtgcgatgtgaagtgaattcatgggtggagaaggagaccaatggccttatcaaatacatgattcctaaatggtcagtaaatagtgcaacaaggctcatccttgcgaatgccttatacttcaaaggagcttgggacaagaaatttgatgcatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

146

Amino Acids

16.5

Weight (kDa)

7.76

Isoelectric Point (pI)

22.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AciI CCGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 2 cut(s) 301, 425
AcvI CACGTG 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 4 cut(s) 217, 253, 268, 406
AluBI AGCT 2 cut(s) 91, 413
AluI AGCT 2 cut(s) 91, 413
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 1 cut(s) 145
AoxI GGCC 3 cut(s) 152, 270, 328
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 2 cut(s) 301, 425
ArsI GACNNNNNNTTYG 1 cut(s) 410
AspS9I GGNCC 2 cut(s) 115, 152
AsuHPI GGTGA 1 cut(s) 51
AvaII GGWCC 1 cut(s) 115
BbrPI CACGTG 1 cut(s) 76
BbvI GCAGC 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 314
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 115, 152
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 1 cut(s) 421
BsaAI YACGTR 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 257
BshFI GGCC 3 cut(s) 154, 272, 330
BslFI GGGAC 2 cut(s) 101, 431
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 101, 431
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 3 cut(s) 154, 272, 330
Bso31I GGTCTC 1 cut(s) 314
Bsp143I GATC 3 cut(s) 6, 27, 137
BspACI CCGC 1 cut(s) 150
BspANI GGCC 3 cut(s) 154, 272, 330
BspHI TCATGA 1 cut(s) 437
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 314
BssMI GATC 3 cut(s) 6, 27, 137
Bst4CI ACNGT 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 89, 152
BstF5I GGATG 1 cut(s) 381
BstKTI GATC 3 cut(s) 9, 30, 140
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 3 cut(s) 6, 27, 137
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 257
BsuRI GGCC 3 cut(s) 154, 272, 330
BtgZI GCGATG 1 cut(s) 304
BtsCI GGATG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 89, 152
CciI TCATGA 1 cut(s) 437
Cfr13I GGNCC 2 cut(s) 115, 152
CviAII CATG 4 cut(s) 49, 306, 343, 438
CviJI RGCY 7 cut(s) 91, 154, 248, 272, 330, 379, 413
CviKI_1 RGCY 7 cut(s) 91, 154, 248, 272, 330, 379, 413
DpnI GATC 3 cut(s) 8, 29, 139
DpnII GATC 3 cut(s) 6, 27, 137
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 115
Eco72I CACGTG 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 436
FaeI CATG 4 cut(s) 52, 309, 346, 441
FaiI YATR 6 cut(s) 50, 279, 307, 344, 400, 439
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 2 cut(s) 101, 431
FatI CATG 4 cut(s) 48, 305, 342, 437
FauI CCCGC 1 cut(s) 143
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 3 cut(s) 154, 272, 330
Hin1II CATG 4 cut(s) 52, 309, 346, 441
HinfI GANTC 2 cut(s) 191, 346
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 2 cut(s) 55, 229
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 2 cut(s) 205, 438
Hpy8I GTNNAC 2 cut(s) 55, 229
HpyAV CCTTC 2 cut(s) 26, 310
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 371, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 4 cut(s) 52, 309, 346, 441
Kzo9I GATC 3 cut(s) 6, 27, 137
LmnI GCTCC 1 cut(s) 410
LpnPI CCDG 1 cut(s) 107
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 1 cut(s) 421
MaeII ACGT 1 cut(s) 75
MalI GATC 3 cut(s) 8, 29, 139
MboI GATC 3 cut(s) 6, 27, 137
MboII GAAGA 1 cut(s) 55
MfeI CAATTG 1 cut(s) 17
MluCI AATT 4 cut(s) 17, 109, 301, 425
MnlI CCTC 7 cut(s) 110, 115, 124, 129, 165, 181, 208
Mph1103I ATGCAT 1 cut(s) 436
MseI TTAA 1 cut(s) 93
MunI CAATTG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 397
MwoI GCNNNNNNNGC 1 cut(s) 156
NdeII GATC 3 cut(s) 6, 27, 137
NlaIII CATG 4 cut(s) 52, 309, 346, 441
NlaIV GGNNCC 1 cut(s) 117
NsiI ATGCAT 1 cut(s) 436
PagI TCATGA 1 cut(s) 437
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 1 cut(s) 397
PfeI GAWTC 2 cut(s) 191, 346
PkrI GCNGC 1 cut(s) 247
PmaCI CACGTG 1 cut(s) 76
PmlI CACGTG 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 76
PspCI CACGTG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 115, 152
PsrI GAACNNNNNNTAC 2 cut(s) 38, 70
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 3 cut(s) 6, 27, 137
Sau96I GGNCC 2 cut(s) 115, 152
SetI ASST 5 cut(s) 37, 78, 93, 102, 415
SfaNI GCATC 1 cut(s) 421
SinI GGWCC 1 cut(s) 115
Sse9I AATT 4 cut(s) 17, 109, 301, 425
SsiI CCGC 1 cut(s) 150
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 30
TasI AATT 4 cut(s) 17, 109, 301, 425
TfiI GAWTC 2 cut(s) 191, 346
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 69
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 70, 294, 294
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 2 cut(s) 301, 425
XmiI GTMKAC 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.