Rh7BG092800

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000163
Physical Location & Seq
Forward (+)
6846006 .. 6858076
12071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG092800.1

Sequence Viewer

Length: 2550 bp
ATGGCAAGTATAGATAGCACCACTCCATTTGGTGCCCAGACAGGGAGTTCCCTATTTGGGGGAACTTCAACTGGCGTATTTGGTCAAACCCAATCCTCGCCTTTTGGTGCTTCATCCTCGCCAGCTTTCGGACAGCAGAGTTCTCCATTTGGAGCATCTTCTACTCCAGCATTTGGTGCACCATCGTCTACTCAAACAAGTCCGTTTGGTGGAGCATCCGGTACGTCTGCTTTTGGTCAGAAGCCCGCTTTTGGAGCATTTGGGTCGAGTCCTGCTCAAACAAGTCCATTTGGAAGCACAGCTCAACCATCACAACCAGCATTTGGAAGCAATATGTTTGGTACCACCTCTACACCATTTGGTGCGAGTCAGCCTGCATTTGGCACTAATACTGCCCCAGCCTTTGGTTCAACGAATACCACAGGCTTTGGTGGCCAGAGCACCCCTGGTTTTGGTGGCCAAGGCACTCCAGCCTTTGGGGCCACAAGCGCTTCACCTTTTGGTAGTACAAGTAATCCGGCGTTTGGTGCTCCAAGTACTCCTACCTTTGGCTCAACACCAAGTCCTACATTTGGAAGCACAGGATCTGCATTTGGGACAACAAGTTCCAACTTGTTTGGATCAGGGGGAGCATTTGGGGCTTCAACCACCCCAGCTTTTGGTCAATCTAGCTCAGCTTTTGGTACCACAACAAGTGCTCCTGCTTTTGGTCAATCAAGTTCAGGTTTTGGCTTTTCAACAAGTGCTCCTGCATTTGGCCAATCAAGTTCAACCTTTGGTAGCACCCAATTTGCGGCTTCATCTCCTTTCGGAGCGCAGAGTTCGCCGTCTCCTTTCGGAGCGCAGAGTTCGCCATTTGGGGCTCAGTCAACAACACCAACACTTGGAAACACTGCCTTTGGACAGTCGGCTTTTGGGGGCCAACGGGGTGGAAGTAGAGTGACTGCTTACACAGGCACATCTGAACCAGATAGTAATGGAATGGGGAAATTGGAGTCAATATCAGCAATGCCAGCCTATAAAGAAAAAAGTCACGAGGAATTGAGATGGGAGGATTACCAATTAGGGTATAAAGGTGGACCGTCTCCTGCTACTGGTTTTGGTGTCACTTCATCTTCACCATTTAGTTTGACTTCACCGTTTAGTTCTTCATCAACTCAAACCAATTTTTTTACACCTGCATCATCTGCCTCACCATTTGGCCAAACGTCTTCTCCAGCTATTTTTAGTTTACCGTCTTCCTTTTCATTCTCTATCCTGGCTACATCATCCACTCCCTCATTTAATTTTCCCACTCCATCAAACCCACAGACACAGTTTGGTCAAACAGGCGCTACCTCCTTCTGGCTGGATCCATCTACCTTTGGTTCAAACTGGTTCAATAATACTTCCAGTTTGCAGAGCAGTTCATTGGGTACTACAAGCAACCAACTGGGTATTACTCAACCAGCTCCTGCTTTTCCTACTTTTCAGACATCTCAGCCTCTTCAGACTAGTCCTTTTGGCTTCAGCAACACCAACACCTTTAATCAACCACAGCCAGGCAACACAAGTGCCTTTGGTGGTTTAGCAGGCATTTCTGGTCAGAGCAACTTTGGACAATCGTCTGTGGCTCAAGGCTCTGCAGCTGTACAACAACCAGTACCTGCTACAAATCCAGTTGGAACGCTCCCCGCGATGCCTCAGATGTCAATTGCTCCTTATCAGAAGCCTGATTCTGGAACTACTACTTCCGTCACTAGTATCACCATAAACCCAACTTCTGGTACTGCTGTCACTATAACCCCCAGTCCTGGCAGTACTGTCACCATAACCATCTCAACTTCTGGTAGTACTACTATCAATATATCCCCCACTTCTGAAACTACCTCAAGTAATACACCTTCGCCAACTGGAGAAACTTCATCTCCATTTAGCTTTAGGCTTCCCCATCCTGCCCCAGAGTCTCCGAGTTTATTTCAACCCTTCAACAGTTTGGATAAAAAACCGCCAGCTGTACAACCAATACATTCTACAAGCTCGTCTCTGCTTCCAACTCCAGTTCCTGCACAGCCAATTGAAGATGGAGCTCAAGCAACAACACCAACATCTGAGAACACTAGCTTTTGGAATTCAGCTTTTGGGGGCCAGCGTGGGGGTAGTAGAGTGGCTACATACATAGGCACACTGGCACCAGATTCTTTTGTTAATAGGAATGCTGCAACAGTGGTGAAATTGATGTCAATATCAGCTATGCCAGTTTATATAAATAAAAGTCATGAAGAATTGCGCCATGAGGATTATCACTTGGGGGATAAAGGTGGACTGACTCCTGCTGGTGGGAGTGGGTTTGGCACCTCTACCACACATTCAGGCCCTCTGAATCCTGCATCAACAAGGACTTGGACAAAGACACAGATATGGATGATTGGGTTTTCTGCTGATCCTTGGGTTGCAAGAATGATGGTCAATGGTGAGGACGATGCTGCTGATCTCTTGTGTTTCCTTTACGAGATCGCACGCCGCCGGCCGCTCCCGTACTTCGCCGCTCCGTCTCCGCTTTCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902446 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2000030 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

849

Amino Acids

85.79

Weight (kDa)

5.67

Isoelectric Point (pI)

64.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup98_GLEBS PF21240 334 - 353 2.8e-06 Nup98, Gle2-binding sequence
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1186
Acc36I ACCTGC 2 cut(s) 1186, 1654
Acc65I GGTACC 2 cut(s) 341, 683
AccB1I GGYRCC 5 cut(s) 32, 341, 683, 2170, 2333
AccB7I CCANNNNNTGG 7 cut(s) 173, 323, 404, 476, 659, 884, 1763
AccBSI CCGCTC 2 cut(s) 2512, 2528
AccI GTMKAC 1 cut(s) 188
AccII CGCG 1 cut(s) 1676
AciI CCGC 8 cut(s) 246, 794, 1674, 1988, 2503, 2510, 2526, 2537
AclWI GGATC 5 cut(s) 592, 628, 1346, 1359, 2417
AcoI YGGCCR 5 cut(s) 433, 457, 757, 1201, 2507
AcsI RAATTY 1 cut(s) 2110
AcuI CTGAAG 2 cut(s) 1472, 1492
AfeI AGCGCT 1 cut(s) 490
AhlI ACTAGT 2 cut(s) 1493, 1739
AjnI CCWGG 4 cut(s) 445, 1257, 1540, 1792
AloI GAACNNNNNNTCC 2 cut(s) 589, 621
Alw21I GWGCWC 6 cut(s) 181, 443, 532, 700, 748, 2071
Alw26I GTCTC 5 cut(s) 834, 1089, 1950, 2028, 2538
Alw44I GTGCAC 1 cut(s) 177
AlwI GGATC 5 cut(s) 592, 628, 1346, 1359, 2417
AlwNI CAGNNNCTG 4 cut(s) 587, 1454, 1646, 2045
Aor51HI AGCGCT 1 cut(s) 490
AoxI GGCC 9 cut(s) 433, 457, 480, 757, 919, 1201, 2125, 2353, 2507
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 1625, 2198, 2465
ApoI RAATTY 1 cut(s) 2110
Asp718I GGTACC 2 cut(s) 341, 683
AspLEI GCGC 5 cut(s) 491, 817, 844, 1334, 2271
AspS9I GGNCC 5 cut(s) 480, 919, 1079, 2125, 2354
AsuHPI GGTGA 8 cut(s) 486, 1110, 1128, 1185, 1738, 1798, 2221, 2465
AvaII GGWCC 1 cut(s) 1079
BaeGI GKGCMC 2 cut(s) 37, 181
BaeI ACNNNNGTAYC 2 cut(s) 1758, 1791
BalI TGGCCA 4 cut(s) 435, 459, 759, 1203
BamHI GGATCC 1 cut(s) 1351
BanI GGYRCC 5 cut(s) 32, 341, 683, 2170, 2333
BanII GRGCYC 2 cut(s) 865, 2071
BarI GAAGNNNNNNTAC 2 cut(s) 1867, 1899
BauI CACGAG 1 cut(s) 1034
BbsI GAAGAC 2 cut(s) 1203, 1230
Bbv12I GWGCWC 6 cut(s) 181, 443, 532, 700, 748, 2071
BbvI GCAGC 3 cut(s) 1637, 2185, 2452
BccI CCATC 9 cut(s) 190, 316, 1041, 1306, 1363, 1823, 1938, 2057, 2437
BceAI ACGGC 1 cut(s) 811
BcgI CGANNNNNNTGC 2 cut(s) 246, 280
BciT130I CCWGG 4 cut(s) 447, 1259, 1542, 1794
BcoDI GTCTC 5 cut(s) 834, 1089, 1950, 2028, 2538
BcuI ACTAGT 2 cut(s) 1493, 1739
BfaI CTAG 4 cut(s) 669, 1494, 1740, 2100
BfmI CTRYAG 1 cut(s) 1623
BfoI RGCGCY 2 cut(s) 492, 1335
BfuAI ACCTGC 2 cut(s) 1186, 1654
BglI GCCNNNNNGGC 1 cut(s) 479
BisI GCNGC 7 cut(s) 795, 1626, 2199, 2466, 2503, 2510, 2526
BlpI GCTNAGC 1 cut(s) 673
BlsI GCNGC 7 cut(s) 796, 1627, 2200, 2467, 2504, 2511, 2527
BmcAI AGTACT 3 cut(s) 538, 1801, 1834
Bme1390I CCNGG 4 cut(s) 447, 1259, 1542, 1794
Bme18I GGWCC 1 cut(s) 1079
BmgT120I GGNCC 5 cut(s) 480, 919, 1079, 2125, 2354
BmiI GGNNCC 9 cut(s) 34, 343, 481, 685, 920, 1353, 2126, 2172, 2335
BmrFI CCNGG 4 cut(s) 447, 1259, 1542, 1794
BmrI ACTGGG 2 cut(s) 1442, 1782
BmsI GCATC 6 cut(s) 164, 224, 1190, 1668, 2378, 2452
BmuI ACTGGG 2 cut(s) 1442, 1782
BoxI GACNNNNGTC 1 cut(s) 1603
BpiI GAAGAC 2 cut(s) 1203, 1230
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BpmI CTGGAG 5 cut(s) 150, 453, 1200, 1914, 2022
Bpu1102I GCTNAGC 1 cut(s) 673
BpuEI CTTGAG 3 cut(s) 1599, 1855, 2055
BsaJI CCNNGG 3 cut(s) 445, 460, 2426
BsaWI WCCGGW 1 cut(s) 218
BsaXI ACNNNNNCTCC 8 cut(s) 682, 712, 730, 760, 1198, 1228, 1891, 1921
Bse118I RCCGGY 1 cut(s) 2505
Bse3DI GCAATG 1 cut(s) 1014
BseBI CCWGG 4 cut(s) 447, 1259, 1542, 1794
BseDI CCNNGG 3 cut(s) 445, 460, 2426
BseGI GGATG 5 cut(s) 113, 215, 1268, 1930, 2409
BseMI GCAATG 1 cut(s) 1014
BseMII CTCAG 5 cut(s) 687, 878, 1493, 1697, 2082
BseSI GKGCMC 2 cut(s) 37, 181
BseX3I CGGCCG 1 cut(s) 2507
BseXI GCAGC 3 cut(s) 1637, 2185, 2452
BseYI CCCAGC 2 cut(s) 397, 652
BsgI GTGCAG 1 cut(s) 2031
Bsh1236I CGCG 1 cut(s) 1676
Bsh1285I CGRYCG 1 cut(s) 2510
BshFI GGCC 9 cut(s) 435, 459, 482, 759, 921, 1203, 2127, 2355, 2509
BshNI GGYRCC 5 cut(s) 32, 341, 683, 2170, 2333
BsiEI CGRYCG 1 cut(s) 2510
BsiHKAI GWGCWC 6 cut(s) 181, 443, 532, 700, 748, 2071
BsiSI CCGG 3 cut(s) 219, 518, 2506
BslFI GGGAC 1 cut(s) 610
BsmAI GTCTC 5 cut(s) 834, 1089, 1950, 2028, 2538
BsmBI CGTCTC 4 cut(s) 834, 1089, 2028, 2538
BsmFI GGGAC 1 cut(s) 610
BsmI GAATGC 1 cut(s) 2200
BsnI GGCC 9 cut(s) 435, 459, 482, 759, 921, 1203, 2127, 2355, 2509
Bsp1286I GDGCHC 8 cut(s) 37, 181, 443, 532, 700, 748, 865, 2071
Bsp1407I TGTACA 2 cut(s) 1630, 1996
Bsp143I GATC 6 cut(s) 584, 620, 1351, 2422, 2470, 2493
Bsp1720I GCTNAGC 1 cut(s) 673
BspACI CCGC 8 cut(s) 246, 794, 1674, 1988, 2503, 2510, 2526, 2537
BspANI GGCC 9 cut(s) 435, 459, 482, 759, 921, 1203, 2127, 2355, 2509
BspCNI CTCAG 5 cut(s) 686, 877, 1492, 1696, 2083
BspFNI CGCG 1 cut(s) 1676
BspHI TCATGA 1 cut(s) 2257
BspLI GGNNCC 9 cut(s) 34, 343, 481, 685, 920, 1353, 2126, 2172, 2335
BspMAI CTGCAG 1 cut(s) 1627
BspMI ACCTGC 2 cut(s) 1186, 1654
BspPI GGATC 5 cut(s) 592, 628, 1346, 1359, 2417
BspT107I GGYRCC 5 cut(s) 32, 341, 683, 2170, 2333
BsrBI CCGCTC 2 cut(s) 2512, 2528
BsrDI GCAATG 1 cut(s) 1014
BsrFI RCCGGY 1 cut(s) 2505
BsrGI TGTACA 2 cut(s) 1630, 1996
BssAI RCCGGY 1 cut(s) 2505
BssECI CCNNGG 3 cut(s) 445, 460, 2426
BssMI GATC 6 cut(s) 584, 620, 1351, 2422, 2470, 2493
BssSI CACGAG 1 cut(s) 1034
BssT1I CCWWGG 2 cut(s) 460, 2426
Bst2BI CACGAG 1 cut(s) 1034
Bst2UI CCWGG 4 cut(s) 447, 1259, 1542, 1794
Bst4CI ACNGT 8 cut(s) 906, 1083, 1140, 1236, 1317, 1804, 1973, 2206
Bst6I CTCTTC 1 cut(s) 1491
BstAPI GCANNNNNTGC 2 cut(s) 176, 1187
BstAUI TGTACA 2 cut(s) 1630, 1996
BstC8I GCNNGC 9 cut(s) 123, 246, 375, 1014, 1573, 1992, 2129, 2500, 2507
BstDEI CTNAG 5 cut(s) 673, 864, 1479, 1683, 2091
BstF5I GGATG 5 cut(s) 113, 215, 1268, 1930, 2409
BstFNI CGCG 1 cut(s) 1676
BstH2I RGCGCY 2 cut(s) 492, 1335
BstHHI GCGC 5 cut(s) 491, 817, 844, 1334, 2271
BstKTI GATC 6 cut(s) 587, 623, 1354, 2425, 2473, 2496
BstMAI GTCTC 5 cut(s) 834, 1089, 1950, 2028, 2538
BstMBI GATC 6 cut(s) 584, 620, 1351, 2422, 2470, 2493
BstMCI CGRYCG 1 cut(s) 2510
BstNI CCWGG 4 cut(s) 447, 1259, 1542, 1794
BstPAI GACNNNNGTC 1 cut(s) 1603
BstSCI CCNGG 4 cut(s) 445, 1257, 1540, 1792
BstSFI CTRYAG 1 cut(s) 1623
BstSLI GKGCMC 2 cut(s) 37, 181
BstUI CGCG 1 cut(s) 1676
BstV1I GCAGC 3 cut(s) 1637, 2185, 2452
BstV2I GAAGAC 2 cut(s) 1203, 1230
BstX2I RGATCY 2 cut(s) 584, 1351
BstXI CCANNNNNNTGG 1 cut(s) 929
BstYI RGATCY 2 cut(s) 584, 1351
BstZI CGGCCG 1 cut(s) 2507
BsuRI GGCC 9 cut(s) 435, 459, 482, 759, 921, 1203, 2127, 2355, 2509
BtgZI GCGATG 1 cut(s) 1691
BtsCI GGATG 5 cut(s) 113, 215, 1268, 1930, 2409
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 3 cut(s) 891, 2165, 2211
BveI ACCTGC 2 cut(s) 1186, 1654
Cac8I GCNNGC 9 cut(s) 123, 246, 375, 1014, 1573, 1992, 2129, 2500, 2507
CaiI CAGNNNCTG 4 cut(s) 587, 1454, 1646, 2045
CciI TCATGA 1 cut(s) 2257
CfoI GCGC 5 cut(s) 491, 817, 844, 1334, 2271
Cfr10I RCCGGY 1 cut(s) 2505
Cfr13I GGNCC 5 cut(s) 480, 919, 1079, 2125, 2354
CspCI CAANNNNNGTGG 4 cut(s) 10, 45, 409, 444
CviAII CATG 2 cut(s) 2258, 2273
DdeI CTNAG 5 cut(s) 673, 864, 1479, 1683, 2091
DpnI GATC 6 cut(s) 586, 622, 1353, 2424, 2472, 2495
DpnII GATC 6 cut(s) 584, 620, 1351, 2422, 2470, 2493
EaeI YGGCCR 5 cut(s) 433, 457, 757, 1201, 2507
EagI CGGCCG 1 cut(s) 2507
Eam1104I CTCTTC 1 cut(s) 1491
EarI CTCTTC 1 cut(s) 1491
Ecl136II GAGCTC 1 cut(s) 2069
EclXI CGGCCG 1 cut(s) 2507
Eco130I CCWWGG 2 cut(s) 460, 2426
Eco24I GRGCYC 2 cut(s) 865, 2071
Eco47I GGWCC 1 cut(s) 1079
Eco47III AGCGCT 1 cut(s) 490
Eco52I CGGCCG 1 cut(s) 2507
Eco53kI GAGCTC 1 cut(s) 2069
Eco57I CTGAAG 2 cut(s) 1472, 1492
EcoICRI GAGCTC 1 cut(s) 2069
EcoO109I RGGNCCY 1 cut(s) 2354
EcoRI GAATTC 1 cut(s) 2110
EcoRII CCWGG 4 cut(s) 445, 1257, 1540, 1792
EcoT14I CCWWGG 2 cut(s) 460, 2426
EcoT38I GRGCYC 2 cut(s) 865, 2071
ErhI CCWWGG 2 cut(s) 460, 2426
Esp3I CGTCTC 4 cut(s) 834, 1089, 2028, 2538
FaeI CATG 2 cut(s) 2261, 2276
FaqI GGGAC 1 cut(s) 610
FatI CATG 2 cut(s) 2257, 2272
FauI CCCGC 2 cut(s) 253, 1681
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 7 cut(s) 795, 1626, 2199, 2466, 2503, 2510, 2526
FokI GGATG 5 cut(s) 100, 202, 1255, 1917, 2416
FriOI GRGCYC 2 cut(s) 865, 2071
Fsp4HI GCNGC 7 cut(s) 795, 1626, 2199, 2466, 2503, 2510, 2526
FspBI CTAG 4 cut(s) 669, 1494, 1740, 2100
GlaI GCGC 5 cut(s) 490, 816, 843, 1333, 2270
GluI GCNGC 7 cut(s) 795, 1626, 2199, 2466, 2503, 2510, 2526
GsaI CCCAGC 2 cut(s) 401, 656
GsuI CTGGAG 5 cut(s) 150, 453, 1200, 1914, 2022
HaeII RGCGCY 2 cut(s) 492, 1335
HaeIII GGCC 9 cut(s) 435, 459, 482, 759, 921, 1203, 2127, 2355, 2509
HapII CCGG 3 cut(s) 219, 518, 2506
HhaI GCGC 5 cut(s) 491, 817, 844, 1334, 2271
Hin1II CATG 2 cut(s) 2261, 2276
Hin6I GCGC 5 cut(s) 489, 815, 842, 1332, 2269
HinP1I GCGC 5 cut(s) 489, 815, 842, 1332, 2269
HincII GTYRAC 1 cut(s) 870
HindII GTYRAC 1 cut(s) 870
HinfI GANTC 8 cut(s) 268, 367, 995, 1715, 1943, 2177, 2308, 2362
HpaII CCGG 3 cut(s) 219, 518, 2506
HphI GGTGA 8 cut(s) 486, 1110, 1128, 1185, 1738, 1798, 2221, 2465
Hpy166II GTNNAC 6 cut(s) 179, 189, 870, 1079, 1232, 2303
Hpy188III TCNNGA 3 cut(s) 1034, 1719, 2258
Hpy8I GTNNAC 6 cut(s) 179, 189, 870, 1079, 1232, 2303
HpyAV CCTTC 3 cut(s) 1351, 1893, 1975
HpyCH4III ACNGT 8 cut(s) 906, 1083, 1140, 1236, 1317, 1804, 1973, 2206
HpyCH4IV ACGT 2 cut(s) 224, 1208
HpyF3I CTNAG 5 cut(s) 673, 864, 1479, 1683, 2091
HpySE526I ACGT 2 cut(s) 224, 1208
Hsp92II CATG 2 cut(s) 2261, 2276
HspAI GCGC 5 cut(s) 489, 815, 842, 1332, 2269
KpnI GGTACC 2 cut(s) 345, 687
KroI GCCGGC 1 cut(s) 2505
KroNI GCCGGC 1 cut(s) 2507
Kzo9I GATC 6 cut(s) 584, 620, 1351, 2422, 2470, 2493
Lsp1109I GCAGC 3 cut(s) 1637, 2185, 2452
LweI GCATC 6 cut(s) 164, 224, 1190, 1668, 2378, 2452
MaeI CTAG 4 cut(s) 669, 1494, 1740, 2100
MaeII ACGT 2 cut(s) 224, 1208
MaeIII GTNAC 6 cut(s) 940, 1031, 1105, 1735, 1774, 1804
MalI GATC 6 cut(s) 586, 622, 1353, 2424, 2472, 2495
MbiI CCGCTC 2 cut(s) 2512, 2528
MboI GATC 6 cut(s) 584, 620, 1351, 2422, 2470, 2493
MboII GAAGA 8 cut(s) 150, 1107, 1140, 1203, 1230, 1478, 2072, 2273
MfeI CAATTG 2 cut(s) 1692, 2055
MflI RGATCY 2 cut(s) 584, 1351
MhlI GDGCHC 8 cut(s) 37, 181, 443, 532, 700, 748, 865, 2071
MlsI TGGCCA 4 cut(s) 435, 459, 759, 1203
MluNI TGGCCA 4 cut(s) 435, 459, 759, 1203
MlyI GAGTC 5 cut(s) 277, 376, 1004, 1952, 2302
MmeI TCCRAC 3 cut(s) 633, 1642, 2057
Mox20I TGGCCA 4 cut(s) 435, 459, 759, 1203
MroNI GCCGGC 1 cut(s) 2505
MscI TGGCCA 4 cut(s) 435, 459, 759, 1203
MseI TTAA 3 cut(s) 1284, 1527, 2187
MslI CAYNNNNRTG 1 cut(s) 2398
Msp20I TGGCCA 4 cut(s) 435, 459, 759, 1203
MspA1I CMGCKG 2 cut(s) 1628, 1994
MspI CCGG 3 cut(s) 219, 518, 2506
MspR9I CCNGG 4 cut(s) 447, 1259, 1542, 1794
MunI CAATTG 2 cut(s) 1692, 2055
Mva1269I GAATGC 1 cut(s) 2200
MvaI CCWGG 4 cut(s) 447, 1259, 1542, 1794
MvnI CGCG 1 cut(s) 1676
NaeI GCCGGC 1 cut(s) 2507
NdeII GATC 6 cut(s) 584, 620, 1351, 2422, 2470, 2493
NgoMIV GCCGGC 1 cut(s) 2505
NlaIII CATG 2 cut(s) 2261, 2276
NlaIV GGNNCC 9 cut(s) 34, 343, 481, 685, 920, 1353, 2126, 2172, 2335
NmuCI GTSAC 6 cut(s) 940, 1031, 1105, 1735, 1774, 1804
PagI TCATGA 1 cut(s) 2257
PaqCI CACCTGC 1 cut(s) 1186
PcsI WCGNNNNNNNCGW 1 cut(s) 1673
PctI GAATGC 1 cut(s) 2200
PdiI GCCGGC 1 cut(s) 2507
PfeI GAWTC 3 cut(s) 1715, 2177, 2362
PflMI CCANNNNNTGG 7 cut(s) 173, 323, 404, 476, 659, 884, 1763
PkrI GCNGC 7 cut(s) 796, 1627, 2200, 2467, 2504, 2511, 2527
PleI GAGTC 5 cut(s) 276, 375, 1003, 1951, 2302
PpsI GAGTC 5 cut(s) 276, 375, 1003, 1951, 2302
PshAI GACNNNNGTC 1 cut(s) 1603
Psp124BI GAGCTC 1 cut(s) 2071
Psp6I CCWGG 4 cut(s) 445, 1257, 1540, 1792
PspFI CCCAGC 2 cut(s) 397, 652
PspGI CCWGG 4 cut(s) 445, 1257, 1540, 1792
PspN4I GGNNCC 9 cut(s) 34, 343, 481, 685, 920, 1353, 2126, 2172, 2335
PspPI GGNCC 5 cut(s) 480, 919, 1079, 2125, 2354
PstI CTGCAG 1 cut(s) 1627
PstNI CAGNNNCTG 4 cut(s) 587, 1454, 1646, 2045
PsuI RGATCY 2 cut(s) 584, 1351
PvuII CAGCTG 2 cut(s) 1628, 1994
RseI CAYNNNNRTG 1 cut(s) 2398
SacI GAGCTC 1 cut(s) 2071
SaqAI TTAA 3 cut(s) 1284, 1527, 2187
SatI GCNGC 7 cut(s) 795, 1626, 2199, 2466, 2503, 2510, 2526
Sau3AI GATC 6 cut(s) 584, 620, 1351, 2422, 2470, 2493
Sau96I GGNCC 5 cut(s) 480, 919, 1079, 2125, 2354
ScaI AGTACT 3 cut(s) 538, 1801, 1834
SchI GAGTC 5 cut(s) 277, 376, 1004, 1952, 2302
ScrFI CCNGG 4 cut(s) 447, 1259, 1542, 1794
SduI GDGCHC 8 cut(s) 37, 181, 443, 532, 700, 748, 865, 2071
SfaNI GCATC 6 cut(s) 164, 224, 1190, 1668, 2378, 2452
SfcI CTRYAG 1 cut(s) 1623
SinI GGWCC 1 cut(s) 1079
SmiMI CAYNNNNRTG 1 cut(s) 2398
SmlI CTYRAG 3 cut(s) 1614, 1870, 2070
SmoI CTYRAG 3 cut(s) 1614, 1870, 2070
SpeI ACTAGT 2 cut(s) 1493, 1739
SsiI CCGC 8 cut(s) 246, 794, 1674, 1988, 2503, 2510, 2526, 2537
SspMI CTAG 4 cut(s) 669, 1494, 1740, 2100
SstI GAGCTC 1 cut(s) 2071
StyD4I CCNGG 4 cut(s) 445, 1257, 1540, 1792
StyI CCWWGG 2 cut(s) 460, 2426
TaaI ACNGT 8 cut(s) 906, 1083, 1140, 1236, 1317, 1804, 1973, 2206
TaiI ACGT 2 cut(s) 227, 1211
TaqI TCGA 1 cut(s) 266
TatI WGTACW 6 cut(s) 506, 536, 1630, 1799, 1832, 1996
TauI GCSGC 4 cut(s) 797, 2505, 2512, 2528
TfiI GAWTC 3 cut(s) 1715, 2177, 2362
Tru1I TTAA 3 cut(s) 1284, 1527, 2187
Tru9I TTAA 3 cut(s) 1284, 1527, 2187
TscAI CASTG 3 cut(s) 898, 2172, 2211
TseFI GTSAC 6 cut(s) 940, 1031, 1105, 1735, 1774, 1804
TseI GCWGC 3 cut(s) 1625, 2198, 2465
Tsp45I GTSAC 6 cut(s) 940, 1031, 1105, 1735, 1774, 1804
TspDTI ATGAA 8 cut(s) 102, 789, 1101, 1140, 1236, 1398, 1893, 2274
TspGWI ACGGA 3 cut(s) 192, 1723, 2520
TspRI CASTG 3 cut(s) 898, 2172, 2211
Van91I CCANNNNNTGG 7 cut(s) 173, 323, 404, 476, 659, 884, 1763
VneI GTGCAC 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 1079
XapI RAATTY 1 cut(s) 2110
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 4 cut(s) 669, 1494, 1740, 2100
ZrmI AGTACT 3 cut(s) 538, 1801, 1834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.