Rorug05G0327700

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
39416746 .. 39417812
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0327700.1

Sequence Viewer

Length: 513 bp
ATGGATCAAAATTTATCAGATTCATCTTCAGATGCTGCAAGTGAGGAATTTTGGGATCTTGCCAATTCATCATCAGACGAAGAATTGATGAATCTGGAGATTGCTGCTCTACAAGAGAAGGGAAGAAGAAGACGCCGGGGCTCAATTCCTGGTCGCATATATAAAGATAGACAACGATTGCAAGGTCAAGAAACACTCTACAATGATTATTTTGCTGAAAATCTTGTTCATGAAGAAGTTATTTCCCTTAGAGGGTTGGCTGAGATAGAAAAGGTTAAGAAGAGAAGGGAGGAAAGAGCACTTGAAAAAGCTCAACATGAGGAAGAAATGGCACTGCTTGCCAGAGAACGCGCTCGGGCTGAGTTCCAAGACTGGGAGAAAAAAGAAGAAGAAGAGTTCCACTTTGATCAAAGCAAAATGAGGTCAGAGATCAGATTGCTTGAAGGGCGTATCAAGCCAATTGATGTACTTTCCAAGCATCTTGATGGCTCAGATGTTTATTATCTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

20.08

Weight (kDa)

5.06

Isoelectric Point (pI)

73.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cactin_mid PF10312 115 - 162 8.3e-14 Conserved mid region of cactin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 351
AclWI GGATC 2 cut(s) 12, 63
AcsI RAATTY 2 cut(s) 10, 47
AcuI CTGAAG 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 1 cut(s) 468
AfiI CCNNNNNNNGG 2 cut(s) 252, 373
AgsI TTSAA 2 cut(s) 305, 443
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw21I GWGCWC 1 cut(s) 301
AlwI GGATC 2 cut(s) 12, 63
AlwNI CAGNNNCTG 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 35, 104
ApoI RAATTY 2 cut(s) 10, 47
AspLEI GCGC 1 cut(s) 353
AsuC2I CCSGG 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 354
BanII GRGCYC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 2 cut(s) 22, 91
BccI CCATC 1 cut(s) 479
BciT130I CCWGG 1 cut(s) 150
BclI TGATCA 1 cut(s) 406
BcnI CCSGG 1 cut(s) 137
BisI GCNGC 2 cut(s) 36, 105
BlsI GCNGC 2 cut(s) 37, 106
Bme1390I CCNGG 2 cut(s) 137, 150
BmeT110I CYCGRG 1 cut(s) 354
BmrFI CCNGG 2 cut(s) 137, 150
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 2 cut(s) 22, 487
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 373
Bse1I ACTGG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 252, 373
BseMII CTCAG 3 cut(s) 252, 351, 504
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 2 cut(s) 22, 91
Bsh1236I CGCG 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 301
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 1 cut(s) 136
BslI CCNNNNNNNGG 2 cut(s) 252, 373
BsoBI CYCGRG 1 cut(s) 354
Bsp1286I GDGCHC 2 cut(s) 143, 301
Bsp143I GATC 4 cut(s) 4, 55, 406, 429
BspCNI CTCAG 3 cut(s) 253, 352, 503
BspFNI CGCG 1 cut(s) 351
BspHI TCATGA 1 cut(s) 229
BspPI GGATC 2 cut(s) 12, 63
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 4 cut(s) 4, 55, 406, 429
BssNI GRCGYC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 150
Bst6I CTCTTC 2 cut(s) 275, 387
BstACI GRCGYC 1 cut(s) 133
BstAPI GCANNNNNTGC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 4 cut(s) 248, 261, 360, 490
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 4 cut(s) 7, 58, 409, 432
BstMBI GATC 4 cut(s) 4, 55, 406, 429
BstMWI GCNNNNNNNGC 3 cut(s) 338, 445, 454
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 135, 148
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 22, 91
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 339
CaiI CAGNNNCTG 1 cut(s) 35
CciI TCATGA 1 cut(s) 229
CfoI GCGC 1 cut(s) 353
CseI GACGC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 467
CviAII CATG 2 cut(s) 230, 317
CviJI RGCY 6 cut(s) 141, 260, 311, 359, 457, 489
CviKI_1 RGCY 6 cut(s) 141, 260, 311, 359, 457, 489
CviQI GTAC 1 cut(s) 467
DdeI CTNAG 4 cut(s) 248, 261, 360, 490
DpnI GATC 4 cut(s) 6, 57, 408, 431
DpnII GATC 4 cut(s) 4, 55, 406, 429
Eam1104I CTCTTC 2 cut(s) 275, 387
EarI CTCTTC 2 cut(s) 275, 387
Eco24I GRGCYC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 2 cut(s) 233, 320
FaiI YATR 6 cut(s) 158, 160, 162, 231, 318, 508
FatI CATG 2 cut(s) 229, 316
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 2 cut(s) 36, 105
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 2 cut(s) 36, 105
GlaI GCGC 1 cut(s) 352
GluI GCNGC 2 cut(s) 36, 105
GsuI CTGGAG 1 cut(s) 116
HapII CCGG 1 cut(s) 136
HgaI GACGC 1 cut(s) 141
HhaI GCGC 1 cut(s) 353
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 2 cut(s) 233, 320
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HinfI GANTC 2 cut(s) 20, 91
HpaII CCGG 1 cut(s) 136
Hpy188I TCNGA 6 cut(s) 19, 31, 76, 427, 434, 493
Hpy188III TCNNGA 4 cut(s) 95, 188, 230, 482
HpyAV CCTTC 3 cut(s) 112, 279, 437
HpyCH4V TGCA 2 cut(s) 38, 181
HpyF10VI GCNNNNNNNGC 3 cut(s) 338, 445, 454
HpyF3I CTNAG 4 cut(s) 248, 261, 360, 490
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 2 cut(s) 233, 320
HspAI GCGC 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 4 cut(s) 4, 55, 406, 429
LpnPI CCDG 6 cut(s) 80, 135, 149, 162, 355, 358
Lsp1109I GCAGC 2 cut(s) 22, 91
LweI GCATC 2 cut(s) 22, 487
MalI GATC 4 cut(s) 6, 57, 408, 431
MboI GATC 4 cut(s) 4, 55, 406, 429
MfeI CAATTG 1 cut(s) 459
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 143, 301
MluCI AATT 6 cut(s) 10, 47, 64, 83, 144, 459
MnlI CCTC 5 cut(s) 37, 245, 283, 313, 414
MseI TTAA 1 cut(s) 276
MslI CAYNNNNRTG 1 cut(s) 483
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 2 cut(s) 137, 150
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 338, 445, 454
NciI CCSGG 1 cut(s) 137
NdeII GATC 4 cut(s) 4, 55, 406, 429
NlaIII CATG 2 cut(s) 233, 320
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 2 cut(s) 20, 91
PkrI GCNGC 2 cut(s) 37, 106
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 468
RsaNI GTAC 1 cut(s) 467
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 2 cut(s) 36, 105
Sau3AI GATC 4 cut(s) 4, 55, 406, 429
ScrFI CCNGG 2 cut(s) 137, 150
SduI GDGCHC 2 cut(s) 143, 301
SetI ASST 4 cut(s) 187, 276, 313, 425
SfaNI GCATC 2 cut(s) 22, 487
SmiMI CAYNNNNRTG 1 cut(s) 483
Sse9I AATT 6 cut(s) 10, 47, 64, 83, 144, 459
StyD4I CCNGG 2 cut(s) 135, 148
TasI AATT 6 cut(s) 10, 47, 64, 83, 144, 459
TatI WGTACW 1 cut(s) 466
TfiI GAWTC 2 cut(s) 20, 91
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 1 cut(s) 339
TseI GCWGC 2 cut(s) 35, 104
TspDTI ATGAA 5 cut(s) 12, 57, 104, 218, 246
TspRI CASTG 1 cut(s) 339
XapI RAATTY 2 cut(s) 10, 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.