Rorug06G0486100

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000163
Physical Location & Seq
Reverse (-)
60522396 .. 60525190
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0486100.1

Sequence Viewer

Length: 2133 bp
ATGGCGACCAATGAAGAAGATTCAAGGCTCTCTGACATTCAGCTAGCCTGCACAGACTTGAGAACCCTACTCAAAGCCTCTGCCTTGATGGAACAGAATCTGAAAAAGATGGACTACAAGTTTAACCTCATTGACGAAACACTAGCCTCAGCCTCAAGAAGAGTAGCTCCATTACAGTCCATGTCCATGGCCTCCAGGGCCCTGGAAACCAGAATCAACCGAGCTGTCACGCCGGCCCTTGCGCTCCTCGACAACTTCAAGCGATCAGAGTCTATACAGGACAAGCTTCTCGACTTGTCATCGAAGTTGTCAAACGAGAAGAACATGAACAAGAGGCTCAAGACGCTCATCAAGTACGTGGACTGTGTGGATCAGCTCAAGGCGGCGATAAGCTCCATATGCGAGGAGGGCGAGCCGGTGATCCAGAGGCTTCAGGAGGTGGTGGAGTTTCTGAGCCGGACGAAGGCGACTGATCAGTACAGGATCCATCGGTTGAGGGAGACTCTGATCACTTTGAAGGCCTTGTATGAGACAGAGGTGGATGCTATGAGATTTGAAGGGCTGCTTGATGAGGCTTTGCTGAATTTGCAGGATGAGTATGAGAATATATTGCAGCAAATAAAGCATCAAAATATAGTGGATCAATCACAGGCTGTAGATAAGGATAATGAAGGTGATGATCAGATGGTGATCACGGGTTCTAATTTGGGCACTGAGTTGGAAATTGAACTTCTAAGGCGGATCTCACAAACCCTAGCTGCCGAAGATTGTTTGGATATATGCATCGATATTTATGTTAAGGTGAGATACAGAAGAGTGGCAAAAGCACTAATGCGGCTAAACCCAGAGTACTTAAGAACACACAGTCCGGAAGAAATAGACGAAATGGCTTGGGAGAATTTAGAGACGGCCATAACCCTTTGGATCCAACACTTCGAACTCGCAGTGAAAGCAGTGCTGGTCTCAGAGAAGAATTTCTGCGAACAAGTACTGGGAGGCATAATGGACGGGCTGGTCTGGTCAGAATGCTTTGTAAAAATCGCAGACAAAATCATGGCGGTGTTCTTCAGATTCGGCGAAGGCGTAGCCCGGAGCAGCAAAGAGCCACAAAAACTGTTCAAGTTGCTAGACATGTTCGAGTCATTGGAGAAACTCAAGCCTGCATTCTCTCAAGTCTTCGAAGGTGAAGCAGGGACTGACATTTGCGTTCGATTCAGAGAACTCGAGAAGCTTCTGATTCACGCTTCGAGTAAAGTTTTCTGGGAGTTTGGGCTTCAAATTGAAGGAAACTCAGATGGGGTACCTCCCCCGCAAGATGGGTCAGTCCCCAAAATTGTAAGGTACGCTGTGAATTACATGAAGTACTTAGCAACAGAGGCTTACTCTGTTCCCATGGCCAGAGTCCTCAGAACAGAGCAGATTTGGAAAGCTGGGATTCTGTCCAGACCCGAATCCGACGAGAATCTTCTCAGAGATGCCGTTTCCCACATCATGGAAGCTCTGCAGAGGAATGTAGAAGCGAAACAGTCGGGTTATCGGGTCGATAAGTTGGCTCTGCCCCATGTTTTTGCAATGAACACGTACTGGTATATTTACATGAGGACCAAAAACACAGAGCTAGGGAAGCTCGTGGGAGACCAATACATGAAGAAAAATTACAAAGTAATAGCAGAGGAATCGGCTTACATGTATCAGAAGATAGTGTGGGTTCCTCTGGTTAGGGTTTTGGAGAAAGATGATGATTTGGAGCTGGAGAGCAAGGAAGCAATGGTGGGAATGGTTAGAGCGAAAATGGAGGCGTTTATGAAGGGCTTGGATGATGTATCAAAGAGGCACAAAGGGTACTATAGTATTCCTGACGAAGATTTGAGGGAGCAGATTAGATTGGCGACGGTGAAGCTTGTGGTTCCAGCCTACAGTAAGTTCTTGGACTCGTTCTCGGTTTCATTGCCGGGGAAGTCGTCGTATTTGAGCCCTGAGTCAGTTCAGCAGTTGCTGTGTCAGATATTTGAGGGTGGGGAGGTGAAGCTTAAGAGGCGTGGGTCTAGGGATCGGACGGCGGGAGGGAGCTCGGCGGTGGACGGTGCGGTTAAGGGCTTTCGACGCACTAGGTCAAATACCAGTGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

710

Amino Acids

81.06

Weight (kDa)

5.82

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_C PF03081 308 - 666 8.1e-80 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1013
Acc65I GGTACC 1 cut(s) 1300
AccB1I GGYRCC 1 cut(s) 1300
AccB7I CCANNNNNTGG 1 cut(s) 1492
AccIII TCCGGA 1 cut(s) 868
AciI CCGC 8 cut(s) 383, 739, 835, 1058, 1310, 2060, 2075, 2087
AclWI GGATC 9 cut(s) 378, 415, 478, 491, 648, 749, 919, 932, 2058
AcoI YGGCCR 2 cut(s) 909, 1395
AcsI RAATTY 3 cut(s) 583, 898, 973
AcuI CTGAAG 2 cut(s) 416, 1051
AfaI GTAC 9 cut(s) 356, 479, 851, 990, 1302, 1343, 1364, 1583, 1844
AfiI CCNNNNNNNGG 3 cut(s) 463, 1316, 1492
AflII CTTAAG 2 cut(s) 853, 2030
AflIII ACRYGT 3 cut(s) 1131, 1578, 1686
AgsI TTSAA 8 cut(s) 24, 259, 517, 557, 728, 1120, 1277, 1283
AjnI CCWGG 2 cut(s) 194, 201
AloI GAACNNNNNNTCC 2 cut(s) 850, 882
Alw21I GWGCWC 1 cut(s) 2072
Alw26I GTCTC 5 cut(s) 494, 524, 899, 967, 1629
AlwI GGATC 9 cut(s) 378, 415, 478, 491, 648, 749, 919, 932, 2058
AlwNI CAGNNNCTG 3 cut(s) 100, 1196, 1996
Ama87I CYCGRG 1 cut(s) 1223
Aor13HI TCCGGA 1 cut(s) 868
AoxI GGCC 6 cut(s) 189, 198, 234, 519, 909, 1395
ApaI GGGCCC 1 cut(s) 202
ApeKI GCWGC 4 cut(s) 562, 613, 758, 1095
ApoI RAATTY 3 cut(s) 583, 898, 973
Asp700I GAANNNNTTC 1 cut(s) 974
Asp718I GGTACC 1 cut(s) 1300
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 4 cut(s) 198, 199, 235, 1602
AsuC2I CCSGG 2 cut(s) 1090, 1953
AsuHPI GGTGA 7 cut(s) 430, 686, 700, 814, 1196, 1906, 2035
AsuII TTCGAA 2 cut(s) 936, 1179
AsuNHI GCTAGC 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 1223
AvaII GGWCC 1 cut(s) 1602
BaeGI GKGCMC 2 cut(s) 202, 713
BaeI ACNNNNGTAYC 2 cut(s) 1834, 1867
BalI TGGCCA 1 cut(s) 1397
BamHI GGATCC 2 cut(s) 483, 924
BanI GGYRCC 1 cut(s) 1300
BanII GRGCYC 3 cut(s) 202, 1976, 2072
BarI GAAGNNNNNNTAC 2 cut(s) 1640, 1672
BauI CACGAG 1 cut(s) 1628
BbsI GAAGAC 1 cut(s) 1168
Bbv12I GWGCWC 1 cut(s) 2072
BbvCI CCTCAGC 1 cut(s) 148
BbvI GCAGC 4 cut(s) 549, 625, 745, 1107
BccI CCATC 6 cut(s) 82, 103, 495, 679, 1289, 1310
BceAI ACGGC 3 cut(s) 924, 1463, 2073
BcgI CGANNNNNNTGC 2 cut(s) 1659, 1693
BciT130I CCWGG 2 cut(s) 196, 203
BclI TGATCA 4 cut(s) 472, 507, 679, 690
BcnI CCSGG 2 cut(s) 1090, 1953
BcoDI GTCTC 5 cut(s) 494, 524, 899, 967, 1629
BfaI CTAG 7 cut(s) 44, 143, 755, 1127, 1619, 2046, 2109
BfmI CTRYAG 4 cut(s) 654, 1502, 1846, 1915
BfrI CTTAAG 2 cut(s) 853, 2030
BglI GCCNNNNNGGC 1 cut(s) 197
BisI GCNGC 6 cut(s) 384, 563, 614, 759, 836, 1096
BlsI GCNGC 6 cut(s) 385, 564, 615, 760, 837, 1097
BmcAI AGTACT 3 cut(s) 851, 990, 1364
Bme1390I CCNGG 4 cut(s) 196, 203, 1090, 1953
Bme18I GGWCC 1 cut(s) 1602
BmeT110I CYCGRG 1 cut(s) 1223
BmgT120I GGNCC 4 cut(s) 198, 199, 235, 1602
BmiI GGNNCC 6 cut(s) 200, 485, 926, 1302, 1710, 1908
BmrFI CCNGG 4 cut(s) 196, 203, 1090, 1953
BmrI ACTGGG 1 cut(s) 1001
BmsI GCATC 4 cut(s) 532, 634, 792, 1465
BmtI GCTAGC 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 1001
BpiI GAAGAC 1 cut(s) 1168
BplI GAGNNNNNCTC 4 cut(s) 487, 519, 1367, 1399
BpmI CTGGAG 2 cut(s) 178, 1772
Bpu10I CCTNAGC 1 cut(s) 148
Bpu14I TTCGAA 2 cut(s) 936, 1179
BpuEI CTTGAG 6 cut(s) 79, 139, 323, 362, 1139, 1155
BpuMI CCSGG 2 cut(s) 1090, 1953
Bsa29I ATCGAT 1 cut(s) 786
BsaAI YACGTR 2 cut(s) 358, 1581
BsaBI GATNNNNATC 1 cut(s) 689
BsaI GGTCTC 2 cut(s) 967, 1629
BsaJI CCNNGG 5 cut(s) 186, 195, 201, 1392, 1952
BsaWI WCCGGW 1 cut(s) 868
Bsc4I CCNNNNNNNGG 3 cut(s) 463, 1316, 1492
Bse118I RCCGGY 2 cut(s) 232, 415
Bse1I ACTGG 3 cut(s) 996, 1589, 2121
Bse3DI GCAATG 3 cut(s) 1578, 1773, 1946
Bse8I GATNNNNATC 1 cut(s) 689
BseAI TCCGGA 1 cut(s) 868
BseBI CCWGG 2 cut(s) 196, 203
BseCI ATCGAT 1 cut(s) 786
BseDI CCNNGG 5 cut(s) 186, 195, 201, 1392, 1952
BseGI GGATG 3 cut(s) 547, 598, 1822
BseJI GATNNNNATC 1 cut(s) 689
BseLI CCNNNNNNNGG 3 cut(s) 463, 1316, 1492
BseMI GCAATG 3 cut(s) 1578, 1773, 1946
BseMII CTCAG 8 cut(s) 162, 443, 705, 978, 1305, 1420, 1483, 1968
BseNI ACTGG 3 cut(s) 996, 1589, 2121
BseRI GAGGAG 2 cut(s) 236, 419
BseSI GKGCMC 2 cut(s) 202, 713
BseXI GCAGC 4 cut(s) 549, 625, 745, 1107
BseYI CCCAGC 1 cut(s) 1430
BsgI GTGCAG 1 cut(s) 34
BshFI GGCC 6 cut(s) 191, 200, 236, 521, 911, 1397
BshNI GGYRCC 1 cut(s) 1300
BshVI ATCGAT 1 cut(s) 786
BsiHKAI GWGCWC 1 cut(s) 2072
BsiHKCI CYCGRG 1 cut(s) 1223
BsiSI CCGG 6 cut(s) 233, 416, 457, 869, 1090, 1952
BslFI GGGAC 2 cut(s) 1207, 1310
BslI CCNNNNNNNGG 3 cut(s) 463, 1316, 1492
BsmAI GTCTC 5 cut(s) 494, 524, 899, 967, 1629
BsmBI CGTCTC 1 cut(s) 899
BsmFI GGGAC 2 cut(s) 1207, 1310
BsmI GAATGC 2 cut(s) 1031, 1163
BsnI GGCC 6 cut(s) 191, 200, 236, 521, 911, 1397
Bso31I GGTCTC 2 cut(s) 967, 1629
BsoBI CYCGRG 1 cut(s) 1223
Bsp119I TTCGAA 2 cut(s) 936, 1179
Bsp120I GGGCCC 1 cut(s) 198
Bsp1286I GDGCHC 4 cut(s) 202, 713, 1976, 2072
Bsp13I TCCGGA 1 cut(s) 868
Bsp19I CCATGG 2 cut(s) 186, 1392
BspACI CCGC 8 cut(s) 383, 739, 835, 1058, 1310, 2060, 2075, 2087
BspANI GGCC 6 cut(s) 191, 200, 236, 521, 911, 1397
BspCNI CTCAG 8 cut(s) 161, 444, 706, 977, 1304, 1419, 1482, 1969
BspDI ATCGAT 1 cut(s) 786
BspEI TCCGGA 1 cut(s) 868
BspLI GGNNCC 6 cut(s) 200, 485, 926, 1302, 1710, 1908
BspMAI CTGCAG 1 cut(s) 1506
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 9 cut(s) 378, 415, 478, 491, 648, 749, 919, 932, 2058
BspT104I TTCGAA 2 cut(s) 936, 1179
BspT107I GGYRCC 1 cut(s) 1300
BspTI CTTAAG 2 cut(s) 853, 2030
BspTNI GGTCTC 2 cut(s) 967, 1629
BsrDI GCAATG 3 cut(s) 1578, 1773, 1946
BsrFI RCCGGY 2 cut(s) 232, 415
BsrI ACTGG 3 cut(s) 996, 1589, 2121
BssAI RCCGGY 2 cut(s) 232, 415
BssECI CCNNGG 5 cut(s) 186, 195, 201, 1392, 1952
BssSI CACGAG 1 cut(s) 1628
BssT1I CCWWGG 2 cut(s) 186, 1392
Bst2BI CACGAG 1 cut(s) 1628
Bst2UI CCWGG 2 cut(s) 196, 203
Bst4CI ACNGT 8 cut(s) 177, 365, 866, 1116, 1527, 1894, 1919, 2084
Bst6I CTCTTC 2 cut(s) 154, 808
BstAFI CTTAAG 2 cut(s) 853, 2030
BstBAI YACGTR 2 cut(s) 358, 1581
BstBI TTCGAA 2 cut(s) 936, 1179
BstC8I GCNNGC 5 cut(s) 45, 49, 234, 413, 1161
BstDSI CCRYGG 2 cut(s) 186, 1392
BstF5I GGATG 3 cut(s) 547, 598, 1822
BstHHI GCGC 1 cut(s) 244
BstMAI GTCTC 5 cut(s) 494, 524, 899, 967, 1629
BstNI CCWGG 2 cut(s) 196, 203
BstNSI RCATGY 2 cut(s) 1135, 1690
BstSCI CCNGG 4 cut(s) 194, 201, 1088, 1951
BstSFI CTRYAG 4 cut(s) 654, 1502, 1846, 1915
BstSLI GKGCMC 2 cut(s) 202, 713
BstV1I GCAGC 4 cut(s) 549, 625, 745, 1107
BstV2I GAAGAC 1 cut(s) 1168
BstX2I RGATCY 3 cut(s) 483, 741, 924
BstXI CCANNNNNNTGG 2 cut(s) 187, 202
BstYI RGATCY 3 cut(s) 483, 741, 924
Bsu15I ATCGAT 1 cut(s) 786
BsuRI GGCC 6 cut(s) 191, 200, 236, 521, 911, 1397
BsuTUI ATCGAT 1 cut(s) 786
BtgI CCRYGG 2 cut(s) 186, 1392
BtsCI GGATG 3 cut(s) 547, 598, 1822
BtsI GCAGTG 2 cut(s) 951, 960
BtsIMutI CAGTG 4 cut(s) 711, 951, 960, 2128
Cac8I GCNNGC 5 cut(s) 45, 49, 234, 413, 1161
CaiI CAGNNNCTG 3 cut(s) 100, 1196, 1996
CfoI GCGC 1 cut(s) 244
Cfr10I RCCGGY 2 cut(s) 232, 415
Cfr13I GGNCC 4 cut(s) 198, 199, 235, 1602
ClaI ATCGAT 1 cut(s) 786
CseI GACGC 2 cut(s) 352, 2112
Csp6I GTAC 9 cut(s) 355, 478, 850, 989, 1301, 1342, 1363, 1582, 1843
CviQI GTAC 9 cut(s) 355, 478, 850, 989, 1301, 1342, 1363, 1582, 1843
DrdI GACNNNNNNGTC 1 cut(s) 1013
DseDI GACNNNNNNGTC 1 cut(s) 1013
EaeI YGGCCR 2 cut(s) 909, 1395
Eam1104I CTCTTC 2 cut(s) 154, 808
EarI CTCTTC 2 cut(s) 154, 808
EciI GGCGGA 1 cut(s) 754
Ecl136II GAGCTC 1 cut(s) 2070
Eco130I CCWWGG 2 cut(s) 186, 1392
Eco147I AGGCCT 1 cut(s) 521
Eco24I GRGCYC 3 cut(s) 202, 1976, 2072
Eco31I GGTCTC 2 cut(s) 967, 1629
Eco47I GGWCC 1 cut(s) 1602
Eco53kI GAGCTC 1 cut(s) 2070
Eco57I CTGAAG 2 cut(s) 416, 1051
Eco88I CYCGRG 1 cut(s) 1223
EcoICRI GAGCTC 1 cut(s) 2070
EcoO109I RGGNCCY 2 cut(s) 198, 199
EcoRII CCWGG 2 cut(s) 194, 201
EcoT14I CCWWGG 2 cut(s) 186, 1392
EcoT22I ATGCAT 1 cut(s) 785
EcoT38I GRGCYC 3 cut(s) 202, 1976, 2072
ErhI CCWWGG 2 cut(s) 186, 1392
Esp3I CGTCTC 1 cut(s) 899
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 2 cut(s) 1207, 1310
FauI CCCGC 2 cut(s) 1317, 2053
FauNDI CATATG 1 cut(s) 398
FbaI TGATCA 4 cut(s) 472, 507, 679, 690
Fnu4HI GCNGC 6 cut(s) 384, 563, 614, 759, 836, 1096
FokI GGATG 3 cut(s) 554, 605, 1829
FriOI GRGCYC 3 cut(s) 202, 1976, 2072
Fsp4HI GCNGC 6 cut(s) 384, 563, 614, 759, 836, 1096
FspBI CTAG 7 cut(s) 44, 143, 755, 1127, 1619, 2046, 2109
GlaI GCGC 1 cut(s) 243
GluI GCNGC 6 cut(s) 384, 563, 614, 759, 836, 1096
GsaI CCCAGC 1 cut(s) 1434
GsuI CTGGAG 2 cut(s) 178, 1772
HaeIII GGCC 6 cut(s) 191, 200, 236, 521, 911, 1397
HapII CCGG 6 cut(s) 233, 416, 457, 869, 1090, 1952
HgaI GACGC 2 cut(s) 352, 2112
HhaI GCGC 1 cut(s) 244
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HindIII AAGCTT 4 cut(s) 284, 1229, 1898, 2027
HpaII CCGG 6 cut(s) 233, 416, 457, 869, 1090, 1952
HphI GGTGA 7 cut(s) 430, 686, 700, 814, 1196, 1906, 2035
Hpy166II GTNNAC 2 cut(s) 361, 2080
Hpy188III TCNNGA 9 cut(s) 156, 290, 340, 424, 434, 869, 1225, 1443, 1856
Hpy8I GTNNAC 2 cut(s) 361, 2080
Hpy99I CGWCG 4 cut(s) 1460, 1894, 1966, 2106
HpyAV CCTTC 8 cut(s) 457, 511, 551, 665, 1073, 1175, 1277, 1801
HpyCH4III ACNGT 8 cut(s) 177, 365, 866, 1116, 1527, 1894, 1919, 2084
HpyCH4IV ACGT 2 cut(s) 357, 1580
HpyCH4V TGCA 7 cut(s) 51, 589, 613, 783, 1163, 1504, 1571
HpySE526I ACGT 2 cut(s) 357, 1580
HspAI GCGC 1 cut(s) 242
Kpn2I TCCGGA 1 cut(s) 868
KpnI GGTACC 1 cut(s) 1304
KroI GCCGGC 1 cut(s) 232
KroNI GCCGGC 1 cut(s) 234
Ksp22I TGATCA 4 cut(s) 472, 507, 679, 690
LmnI GCTCC 7 cut(s) 172, 249, 398, 1092, 1747, 1873, 2067
Lsp1109I GCAGC 4 cut(s) 549, 625, 745, 1107
LweI GCATC 4 cut(s) 532, 634, 792, 1465
MaeI CTAG 7 cut(s) 44, 143, 755, 1127, 1619, 2046, 2109
MaeII ACGT 2 cut(s) 357, 1580
MaeIII GTNAC 1 cut(s) 226
MflI RGATCY 3 cut(s) 483, 741, 924
MhlI GDGCHC 4 cut(s) 202, 713, 1976, 2072
MlsI TGGCCA 1 cut(s) 1397
MluCI AATT 9 cut(s) 583, 703, 723, 898, 973, 1278, 1332, 1351, 1654
MluNI TGGCCA 1 cut(s) 1397
MlyI GAGTC 6 cut(s) 278, 496, 1148, 1410, 1925, 1988
MmeI TCCRAC 3 cut(s) 699, 952, 1479
Mox20I TGGCCA 1 cut(s) 1397
Mph1103I ATGCAT 1 cut(s) 785
MroI TCCGGA 1 cut(s) 868
MroNI GCCGGC 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 974
MscI TGGCCA 1 cut(s) 1397
MseI TTAA 5 cut(s) 123, 798, 854, 2031, 2091
MslI CAYNNNNRTG 2 cut(s) 185, 1058
Msp20I TGGCCA 1 cut(s) 1397
MspCI CTTAAG 2 cut(s) 853, 2030
MspI CCGG 6 cut(s) 233, 416, 457, 869, 1090, 1952
MspR9I CCNGG 4 cut(s) 196, 203, 1090, 1953
Mva1269I GAATGC 2 cut(s) 1031, 1163
MvaI CCWGG 2 cut(s) 196, 203
NaeI GCCGGC 1 cut(s) 234
NciI CCSGG 2 cut(s) 1090, 1953
NcoI CCATGG 2 cut(s) 186, 1392
NdeI CATATG 1 cut(s) 398
NgoMIV GCCGGC 1 cut(s) 232
NheI GCTAGC 1 cut(s) 43
NlaIV GGNNCC 6 cut(s) 200, 485, 926, 1302, 1710, 1908
NmeAIII GCCGAG 1 cut(s) 2051
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 785
NspI RCATGY 2 cut(s) 1135, 1690
NspV TTCGAA 2 cut(s) 936, 1179
PaeR7I CTCGAG 1 cut(s) 1223
PceI AGGCCT 1 cut(s) 521
PciI ACATGT 2 cut(s) 1131, 1686
PcsI WCGNNNNNNNCGW 1 cut(s) 1080
PctI GAATGC 2 cut(s) 1031, 1163
PdiI GCCGGC 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 974
PflMI CCANNNNNTGG 1 cut(s) 1492
PkrI GCNGC 6 cut(s) 385, 564, 615, 760, 837, 1097
PleI GAGTC 6 cut(s) 277, 496, 1147, 1409, 1925, 1987
PpsI GAGTC 6 cut(s) 277, 496, 1147, 1409, 1925, 1987
Ppu21I YACGTR 2 cut(s) 358, 1581
PscI ACATGT 2 cut(s) 1131, 1686
Psp124BI GAGCTC 1 cut(s) 2072
Psp6I CCWGG 2 cut(s) 194, 201
PspFI CCCAGC 1 cut(s) 1430
PspGI CCWGG 2 cut(s) 194, 201
PspN4I GGNNCC 6 cut(s) 200, 485, 926, 1302, 1710, 1908
PspOMI GGGCCC 1 cut(s) 198
PspPI GGNCC 4 cut(s) 198, 199, 235, 1602
PstI CTGCAG 1 cut(s) 1506
PstNI CAGNNNCTG 3 cut(s) 100, 1196, 1996
PsuI RGATCY 3 cut(s) 483, 741, 924
RsaI GTAC 9 cut(s) 356, 479, 851, 990, 1302, 1343, 1364, 1583, 1844
RsaNI GTAC 9 cut(s) 355, 478, 850, 989, 1301, 1342, 1363, 1582, 1843
RseI CAYNNNNRTG 2 cut(s) 185, 1058
SacI GAGCTC 1 cut(s) 2072
SaqAI TTAA 5 cut(s) 123, 798, 854, 2031, 2091
SatI GCNGC 6 cut(s) 384, 563, 614, 759, 836, 1096
Sau96I GGNCC 4 cut(s) 198, 199, 235, 1602
ScaI AGTACT 3 cut(s) 851, 990, 1364
SchI GAGTC 6 cut(s) 278, 496, 1148, 1410, 1925, 1988
ScrFI CCNGG 4 cut(s) 196, 203, 1090, 1953
SduI GDGCHC 4 cut(s) 202, 713, 1976, 2072
SfaNI GCATC 4 cut(s) 532, 634, 792, 1465
SfcI CTRYAG 4 cut(s) 654, 1502, 1846, 1915
SfiI GGCCNNNNNGGCC 1 cut(s) 197
Sfr274I CTCGAG 1 cut(s) 1223
SfuI TTCGAA 2 cut(s) 936, 1179
SinI GGWCC 1 cut(s) 1602
SlaI CTCGAG 1 cut(s) 1223
SmiMI CAYNNNNRTG 2 cut(s) 185, 1058
SmlI CTYRAG 9 cut(s) 58, 154, 338, 377, 853, 1154, 1170, 1223, 2030
SmoI CTYRAG 9 cut(s) 58, 154, 338, 377, 853, 1154, 1170, 1223, 2030
Sse9I AATT 9 cut(s) 583, 703, 723, 898, 973, 1278, 1332, 1351, 1654
SseBI AGGCCT 1 cut(s) 521
SsiI CCGC 8 cut(s) 383, 739, 835, 1058, 1310, 2060, 2075, 2087
SspMI CTAG 7 cut(s) 44, 143, 755, 1127, 1619, 2046, 2109
SstI GAGCTC 1 cut(s) 2072
StuI AGGCCT 1 cut(s) 521
StyD4I CCNGG 4 cut(s) 194, 201, 1088, 1951
StyI CCWWGG 2 cut(s) 186, 1392
TaaI ACNGT 8 cut(s) 177, 365, 866, 1116, 1527, 1894, 1919, 2084
TaiI ACGT 2 cut(s) 360, 1583
TasI AATT 9 cut(s) 583, 703, 723, 898, 973, 1278, 1332, 1351, 1654
TatI WGTACW 4 cut(s) 477, 849, 988, 1362
TauI GCSGC 2 cut(s) 386, 838
Tru1I TTAA 5 cut(s) 123, 798, 854, 2031, 2091
Tru9I TTAA 5 cut(s) 123, 798, 854, 2031, 2091
TscAI CASTG 4 cut(s) 718, 951, 960, 2128
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 4 cut(s) 562, 613, 758, 1095
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 8 cut(s) 27, 341, 684, 1373, 1589, 1661, 1820, 1935
TspRI CASTG 4 cut(s) 718, 951, 960, 2128
Van91I CCANNNNNTGG 1 cut(s) 1492
Vha464I CTTAAG 2 cut(s) 853, 2030
VpaK11BI GGWCC 1 cut(s) 1602
XapI RAATTY 3 cut(s) 583, 898, 973
XceI RCATGY 2 cut(s) 1135, 1690
XhoI CTCGAG 1 cut(s) 1223
XmnI GAANNNNTTC 1 cut(s) 974
XspI CTAG 7 cut(s) 44, 143, 755, 1127, 1619, 2046, 2109
ZrmI AGTACT 3 cut(s) 851, 990, 1364
Zsp2I ATGCAT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.