pycom05g22550

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
24843182 .. 24843728
547 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g22550.1

Sequence Viewer

Length: 285 bp
ATGGGATTTAGGTCGACCAAAGAATCCATCAGCAACCTAACCGATGTCTCTCTCAAAATTACTAAGCAACTGCTCACCACTGACGGCAAAGACAAGAACATGGTGTATTCGCTGCTGTCCATTCAGGTCGTCCTGTGGCTGTTAACGGCTGGGTCAAAGGGTCCCACAAAGGAGCAGTTGCTCTCTTTCCTCAAGCCAAGTCCGTCGACGAACTCAACTCCCTCGCCTCCCATCTTGTCCCTCTGCTCTTTGCAGATGGATCCATTAGAGGCGGTCCCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

95

Amino Acids

10.15

Weight (kDa)

8.85

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 12 - 68 2.4e-07 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 14, 206
AciI CCGC 1 cut(s) 272
AclWI GGATC 2 cut(s) 254, 267
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 2 cut(s) 254, 267
ApeKI GCWGC 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 161, 274
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 2 cut(s) 161, 274
BamHI GGATCC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 99
BccI CCATC 3 cut(s) 35, 239, 250
BceAI ACGGC 2 cut(s) 100, 162
BcoDI GTCTC 1 cut(s) 52
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
Bme18I GGWCC 2 cut(s) 161, 274
BmgT120I GGNCC 2 cut(s) 161, 274
BmiI GGNNCC 4 cut(s) 162, 163, 261, 276
BpuEI CTTGAG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 99
BseYI CCCAGC 1 cut(s) 149
BslFI GGGAC 3 cut(s) 147, 223, 260
BsmAI GTCTC 1 cut(s) 52
BsmFI GGGAC 3 cut(s) 147, 223, 260
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 1 cut(s) 272
BspLI GGNNCC 4 cut(s) 162, 163, 261, 276
BspPI GGATC 2 cut(s) 254, 267
BssMI GATC 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 63
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 161, 274
CviAII CATG 1 cut(s) 100
CviJI RGCY 3 cut(s) 139, 149, 196
CviKI_1 RGCY 3 cut(s) 139, 149, 196
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 161, 274
EcoO109I RGGNCCY 1 cut(s) 161
FaeI CATG 1 cut(s) 103
FaiI YATR 1 cut(s) 101
FaqI GGGAC 3 cut(s) 147, 223, 260
FatI CATG 1 cut(s) 99
FblI GTMKAC 2 cut(s) 14, 206
Fnu4HI GCNGC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 113
GsaI CCCAGC 1 cut(s) 153
Hin1II CATG 1 cut(s) 103
HincII GTYRAC 3 cut(s) 15, 144, 207
HindII GTYRAC 3 cut(s) 15, 144, 207
HinfI GANTC 1 cut(s) 23
HpaI GTTAAC 1 cut(s) 144
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 3 cut(s) 15, 144, 207
Hpy8I GTNNAC 3 cut(s) 15, 144, 207
Hpy99I CGWCG 2 cut(s) 208, 211
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 1 cut(s) 103
KflI GGGWCCC 1 cut(s) 161
KspAI GTTAAC 1 cut(s) 144
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 3 cut(s) 110, 135, 146
Lsp1109I GCAGC 1 cut(s) 99
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MflI RGATCY 1 cut(s) 259
MluCI AATT 1 cut(s) 57
MnlI CCTC 5 cut(s) 200, 232, 237, 251, 262
MseI TTAA 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 1 cut(s) 259
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 4 cut(s) 162, 163, 261, 276
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 114
PpuMI RGGWCCY 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 161
PspFI CCCAGC 1 cut(s) 149
PspN4I GGNNCC 4 cut(s) 162, 163, 261, 276
PspPI GGNCC 2 cut(s) 161, 274
PspPPI RGGWCCY 1 cut(s) 161
PsuI RGATCY 1 cut(s) 259
SalI GTCGAC 2 cut(s) 13, 205
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 2 cut(s) 161, 274
SetI ASST 3 cut(s) 14, 39, 129
SgeI CNNG 9 cut(s) 106, 112, 137, 145, 162, 205, 210, 235, 247
SgrDI CGTCGACG 1 cut(s) 205
SinI GGWCC 2 cut(s) 161, 274
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 272
TaqI TCGA 2 cut(s) 14, 206
TasI AATT 1 cut(s) 57
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 1 cut(s) 85
TseI GCWGC 1 cut(s) 112
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 1 cut(s) 85
VpaK11BI GGWCC 2 cut(s) 161, 274
XmiI GTMKAC 2 cut(s) 14, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.