Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Reverse (-)

43703255 .. 43704809

Gene Structure 1555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00249940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCAGCAACCCACTCCCTCCTCGGCTGTTCACGGGCCCTCCGTCCAAATTTTTCCGGCCATCGTCCGCCGGTTTCCTTTCTCGTTCTCTTTCTCACTTTCGTCATTTGGCCACTGCACGTGGCTGCCTTAAAGCAAGTCGATTTCAAGGGCAAGTCGGATGAAGTTAGAATGGAAGTGAATTCATGGGCCGAGAAGGAGACTAATGGTCGCATCAAAGATATTCTTGCTCCCGGCGTAGTTGACAGCCAAACTAGTCAAGATACCTTTCATGACGAGTGGATAAGGAGCCGGGGGAGGCGGTATATAAGTGTTTTTGAGGGTTTCAAAGTTTTGAAACTCCCTTACAAACAAGGCCAAGATCTGAAGAGGTTCTCCATGTATGTGTTTCTTCCGAATGAAAGAGATGGGTTGCCGCCTTTAGTTGAGAGATTTTCTTCCGAGTCCGAGTTCTTAGATCGGCATCCGCCCCACAAAACAGTTGAAGTTGGTGTCTTTAAAATGCCAAGGTTCAAGTATTCTTGTAGATTTGAAGCTTCCAAAGTTTTGAAAACTTTAGGATTGGAGTTGCCTTTTGTTTCGGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko03013 ko05146 ko05164 map03013 map05146 map05164

Pfam Domains

Protein Families

Serpin

Protein Analysis

196

Amino Acids

22.57

Weight (kDa)

9.39

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	42 - 85	1e-06	Serpin (serine protease inhibitor)
Serpin	PF00079	104 - 193	3.4e-11	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	68, 301, 416, 467
AcoI	YGGCCR	2 cut(s)	58, 110
AcsI	RAATTY	2 cut(s)	49, 181
AcuI	CTGAAG	1 cut(s)	386
AcvI	CACGTG	1 cut(s)	121
AgsI	TTSAA	7 cut(s)	148, 328, 337, 485, 514, 533, 550
AhdI	GACNNNNNGTC	1 cut(s)	207
AhlI	ACTAGT	1 cut(s)	254
AluBI	AGCT	1 cut(s)	536
AluI	AGCT	1 cut(s)	536
Alw26I	GTCTC	1 cut(s)	194
AoxI	GGCC	5 cut(s)	36, 58, 110, 189, 355
ApaI	GGGCCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	5, 125
ApoI	RAATTY	2 cut(s)	49, 181
Asp700I	GAANNNNTTC	1 cut(s)	371
AspS9I	GGNCC	3 cut(s)	36, 37, 189
AsuC2I	CCSGG	2 cut(s)	234, 293
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	40
BbrPI	CACGTG	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	17, 112
BccI	CCATC	2 cut(s)	69, 401
BcnI	CCSGG	2 cut(s)	234, 293
BcoDI	GTCTC	1 cut(s)	194
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	3 cut(s)	6, 126, 416
BlsI	GCNGC	3 cut(s)	7, 127, 417
Bme1390I	CCNGG	2 cut(s)	234, 293
BmeRI	GACNNNNNGTC	1 cut(s)	207
BmgT120I	GGNCC	3 cut(s)	36, 37, 189
BmiI	GGNNCC	2 cut(s)	38, 290
BmrFI	CCNGG	2 cut(s)	234, 293
BmsI	GCATC	2 cut(s)	222, 472
BpuMI	CCSGG	2 cut(s)	234, 293
BsaAI	YACGTR	1 cut(s)	121
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	3 cut(s)	22, 292, 506
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bse118I	RCCGGY	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	462
BseDI	CCNNGG	3 cut(s)	22, 292, 506
BseGI	GGATG	2 cut(s)	166, 463
BseJI	GATNNNNATC	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	11
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	17, 112
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	5 cut(s)	38, 60, 112, 191, 357
BsiSI	CCGG	4 cut(s)	57, 71, 234, 292
BsmAI	GTCTC	1 cut(s)	194
BsnI	GGCC	5 cut(s)	38, 60, 112, 191, 357
Bsp120I	GGGCCC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	361, 457
BspACI	CCGC	4 cut(s)	68, 301, 416, 467
BspANI	GGCC	5 cut(s)	38, 60, 112, 191, 357
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	38, 290
BsrFI	RCCGGY	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	3 cut(s)	22, 292, 506
BssMI	GATC	2 cut(s)	361, 457
BssT1I	CCWWGG	1 cut(s)	506
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	454
BstF5I	GGATG	2 cut(s)	166, 463
BstKTI	GATC	2 cut(s)	364, 460
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	2 cut(s)	361, 457
BstSCI	CCNGG	2 cut(s)	232, 291
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	17, 112
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	5 cut(s)	38, 60, 112, 191, 357
BtsCI	GGATG	2 cut(s)	166, 463
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	3 cut(s)	36, 37, 189
CviAII	CATG	3 cut(s)	186, 272, 379
DdeI	CTNAG	1 cut(s)	454
DpnI	GATC	2 cut(s)	363, 459
DpnII	GATC	2 cut(s)	361, 457
DraI	TTTAAA	1 cut(s)	499
DriI	GACNNNNNGTC	1 cut(s)	207
EaeI	YGGCCR	2 cut(s)	58, 110
Eam1104I	CTCTTC	1 cut(s)	362
Eam1105I	GACNNNNNGTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	362
EciI	GGCGGA	2 cut(s)	57, 456
Eco130I	CCWWGG	1 cut(s)	506
Eco24I	GRGCYC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	386
Eco72I	CACGTG	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	506
FaeI	CATG	3 cut(s)	189, 275, 382
FaiI	YATR	6 cut(s)	187, 273, 306, 308, 380, 384
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	3 cut(s)	185, 271, 378
Fnu4HI	GCNGC	3 cut(s)	6, 126, 416
FokI	GGATG	2 cut(s)	173, 450
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	3 cut(s)	6, 126, 416
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	3 cut(s)	6, 126, 416
HaeIII	GGCC	5 cut(s)	38, 60, 112, 191, 357
HapII	CCGG	4 cut(s)	57, 71, 234, 292
Hin1II	CATG	3 cut(s)	189, 275, 382
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	4 cut(s)	57, 71, 234, 292
Hpy166II	GTNNAC	2 cut(s)	32, 244
Hpy188I	TCNGA	6 cut(s)	160, 366, 396, 442, 448, 583
Hpy188III	TCNNGA	2 cut(s)	260, 272
Hpy8I	GTNNAC	2 cut(s)	32, 244
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	454
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	189, 275, 382
Kzo9I	GATC	2 cut(s)	361, 457
LmnI	GCTCC	2 cut(s)	235, 288
LpnPI	CCDG	4 cut(s)	70, 84, 247, 305
Lsp1109I	GCAGC	2 cut(s)	17, 112
LweI	GCATC	2 cut(s)	222, 472
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	120
MalI	GATC	2 cut(s)	363, 459
MboI	GATC	2 cut(s)	361, 457
MboII	GAAGA	3 cut(s)	379, 383, 429
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	112
MluCI	AATT	2 cut(s)	49, 181
MluNI	TGGCCA	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	7 cut(s)	29, 32, 50, 291, 313, 363, 577
Mox20I	TGGCCA	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	112
MseI	TTAA	2 cut(s)	131, 498
MslI	CAYNNNNRTG	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	112
MspI	CCGG	4 cut(s)	57, 71, 234, 292
MspR9I	CCNGG	2 cut(s)	234, 293
NciI	CCSGG	2 cut(s)	234, 293
NdeII	GATC	2 cut(s)	361, 457
NlaIII	CATG	3 cut(s)	189, 275, 382
NlaIV	GGNNCC	2 cut(s)	38, 290
NmeAIII	GCCGAG	1 cut(s)	217
PagI	TCATGA	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	7, 127, 417
PleI	GAGTC	1 cut(s)	451
PmaCI	CACGTG	1 cut(s)	121
PmlI	CACGTG	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	451
Ppu21I	YACGTR	1 cut(s)	121
PspCI	CACGTG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	38, 290
PspOMI	GGGCCC	1 cut(s)	36
PspPI	GGNCC	3 cut(s)	36, 37, 189
PsuI	RGATCY	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	131, 498
SatI	GCNGC	3 cut(s)	6, 126, 416
Sau3AI	GATC	2 cut(s)	361, 457
Sau96I	GGNCC	3 cut(s)	36, 37, 189
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	234, 293
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	6 cut(s)	123, 269, 374, 512, 538, 588
SfaNI	GCATC	2 cut(s)	222, 472
SmiMI	CAYNNNNRTG	1 cut(s)	383
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	2 cut(s)	49, 181
SsiI	CCGC	4 cut(s)	68, 301, 416, 467
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	232, 291
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	141
TasI	AATT	2 cut(s)	49, 181
TauI	GCSGC	1 cut(s)	418
Tru1I	TTAA	2 cut(s)	131, 498
Tru9I	TTAA	2 cut(s)	131, 498
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	2 cut(s)	5, 125
TspDTI	ATGAA	4 cut(s)	174, 177, 260, 414
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	120
XapI	RAATTY	2 cut(s)	49, 181
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.