MD03G1207900.v1.1

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
28453328 .. 28453600
273 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1207900.v1.1.491

Sequence Viewer

Length: 273 bp
ATGCCTCCCGTCTTGGAACATTTACTCACTTTCCTCAAGTCCAAGTCCGTTGACGAACTCAACTCCCTCGCCACCCATCTTGTTCCTTTAGTCTTGGCAAATGGATCCTTTAGAGGTGATCTCTGCCTATCCTTTGCCAATGGCCTTTGGGTTAAGGAGTATCTCCCCATCAAACCTTCTTTCAAAGAGGTTGTAAACACTGCTTACAAGGCAGATATAAAACATGTTAGTTTCCATGACCCTCAAGAAGTAAGATGTCAAGTGAATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

91

Amino Acids

10.12

Weight (kDa)

6.89

Isoelectric Point (pI)

18.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 16 - 89 1.2e-07 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 99, 112
AcsI RAATTY 1 cut(s) 265
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 1 cut(s) 184
AlwI GGATC 2 cut(s) 99, 112
AoxI GGCC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 128
BamHI GGATCC 1 cut(s) 104
BccI CCATC 2 cut(s) 84, 176
BmiI GGNNCC 1 cut(s) 106
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpuEI CTTGAG 2 cut(s) 20, 228
BshFI GGCC 1 cut(s) 144
BsnI GGCC 1 cut(s) 144
Bsp143I GATC 2 cut(s) 104, 118
BspANI GGCC 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 2 cut(s) 99, 112
BssMI GATC 2 cut(s) 104, 118
BstKTI GATC 2 cut(s) 107, 121
BstMBI GATC 2 cut(s) 104, 118
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 2 cut(s) 224, 236
CviJI RGCY 1 cut(s) 144
CviKI_1 RGCY 1 cut(s) 144
DpnI GATC 2 cut(s) 106, 120
DpnII GATC 2 cut(s) 104, 118
FaeI CATG 2 cut(s) 227, 239
FaiI YATR 4 cut(s) 218, 225, 237, 271
FatI CATG 2 cut(s) 223, 235
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 2 cut(s) 227, 239
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 52, 196
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 2 cut(s) 52, 196
HpyAV CCTTC 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
Hsp92II CATG 2 cut(s) 227, 239
Kzo9I GATC 2 cut(s) 104, 118
MalI GATC 2 cut(s) 106, 120
MboI GATC 2 cut(s) 104, 118
MflI RGATCY 1 cut(s) 104
MluCI AATT 1 cut(s) 265
MnlI CCTC 6 cut(s) 15, 44, 77, 107, 181, 252
MseI TTAA 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 2 cut(s) 104, 118
NlaIII CATG 2 cut(s) 227, 239
NlaIV GGNNCC 1 cut(s) 106
NspI RCATGY 1 cut(s) 227
PciI ACATGT 1 cut(s) 223
PscI ACATGT 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 104
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 2 cut(s) 104, 118
SetI ASST 3 cut(s) 118, 178, 192
SmlI CTYRAG 2 cut(s) 35, 243
SmoI CTYRAG 2 cut(s) 35, 243
Sse9I AATT 1 cut(s) 265
TasI AATT 1 cut(s) 265
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 205
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 1 cut(s) 205
XapI RAATTY 1 cut(s) 265
XceI RCATGY 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.