FvH4_3g09790

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000163
Physical Location & Seq
Reverse (-)
5699142 .. 5706603
7462 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09790.t2

Sequence Viewer

Length: 729 bp
ATGATACCTTGTTCCGCCAATGATGGACAACGTCTTCTATGCTACCTTGTTCCGGCTCTGGAAAGCTCCGGCAAGAACGACGGCACGCCGCCATCTTGGGCAAGCTCCTATCCATCCACGTCGATAGCCGCCGGGAAAAGGAAAACTAGTCCCGATCTGGACCAGTTTCTCTCTTTCCTCAAGTCCAAGTCCGTCGACGACCTCAACTCCCTCGCCTACAATCTTGTCACTTCCATTTTGGCCGATGCATCTCGCGGCGGCGGGCCATGTCTGAACTTGGCCAATGGTCTTAGGATCGACGAGTCTTTCCCACTGGATCATTCTTACATGAAGGTTCTGTTCGAGTCTTACAAGGCAGCTCTAAACCAATTCGATTTCAAATCCAACCCGGAAGGAGTGAGAACCCAAGTGAACTCCTGGATCAACAAGGAAACCAATGGCCTCATCCCTGAGATTCTTCCTCCAGGCTCAGTCACCATGGAATCCAGTCGCATCTCCGCAAACACCTTATATTTCAAAGCAACTTGGGATGACAAGTTCTTTGAGAAATCAAGAACAAGGGACGGTGAGTTTCACCTTCTGAACGGTGACTTGGTAGAGGGAGTACCTTTCATGACCAGCATAGGTCACTTCTCCATAAGTGCATACGATGGTTTTAAAGTTTTGCAACTTCGTTACAAACGAGATTTCAAGGATTTCATGGACAAGATGCAAAAGATGGGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

243

Amino Acids

26.92

Weight (kDa)

6.31

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 46 - 230 1.8e-31 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 195
AccII CGCG 1 cut(s) 255
AciI CCGC 7 cut(s) 15, 89, 129, 255, 258, 261, 498
AclWI GGATC 3 cut(s) 302, 324, 428
AcoI YGGCCR 2 cut(s) 240, 279
AfaI GTAC 1 cut(s) 606
AfiI CCNNNNNNNGG 2 cut(s) 52, 138
AgsI TTSAA 3 cut(s) 379, 517, 691
AhlI ACTAGT 1 cut(s) 146
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 2 cut(s) 416, 463
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AloI GAACNNNNNNTCC 2 cut(s) 521, 553
AluBI AGCT 3 cut(s) 66, 105, 359
AluI AGCT 3 cut(s) 66, 105, 359
AlwI GGATC 3 cut(s) 302, 324, 428
AoxI GGCC 4 cut(s) 240, 263, 279, 439
ApeKI GCWGC 2 cut(s) 356, 723
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
AspS9I GGNCC 2 cut(s) 160, 263
AsuC2I CCSGG 2 cut(s) 133, 389
AsuHPI GGTGA 4 cut(s) 466, 566, 578, 599
AvaII GGWCC 1 cut(s) 160
BalI TGGCCA 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 26
BbvI GCAGC 2 cut(s) 368, 710
BccI CCATC 5 cut(s) 17, 100, 121, 644, 712
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 2 cut(s) 418, 465
BcnI CCSGG 2 cut(s) 133, 389
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 2 cut(s) 147, 727
BisI GCNGC 6 cut(s) 89, 129, 256, 259, 357, 724
BlsI GCNGC 6 cut(s) 90, 130, 257, 260, 358, 725
Bme1390I CCNGG 4 cut(s) 133, 389, 418, 465
Bme18I GGWCC 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 2 cut(s) 160, 263
BmrFI CCNGG 4 cut(s) 133, 389, 418, 465
BmsI GCATC 4 cut(s) 235, 257, 501, 699
BpiI GAAGAC 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 2 cut(s) 133, 389
BsaJI CCNNGG 1 cut(s) 477
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 138
Bse1I ACTGG 3 cut(s) 163, 318, 486
BseBI CCWGG 2 cut(s) 418, 465
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 3 cut(s) 113, 444, 535
BseLI CCNNNNNNNGG 2 cut(s) 52, 138
BseMII CTCAG 2 cut(s) 441, 483
BseNI ACTGG 3 cut(s) 163, 318, 486
BseXI GCAGC 2 cut(s) 368, 710
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 4 cut(s) 242, 265, 281, 441
BsiSI CCGG 4 cut(s) 53, 69, 132, 389
BslFI GGGAC 2 cut(s) 135, 575
BslI CCNNNNNNNGG 2 cut(s) 52, 138
BsmFI GGGAC 2 cut(s) 135, 575
BsnI GGCC 4 cut(s) 242, 265, 281, 441
Bsp143I GATC 4 cut(s) 154, 294, 316, 420
Bsp19I CCATGG 1 cut(s) 477
BspACI CCGC 7 cut(s) 15, 89, 129, 255, 258, 261, 498
BspANI GGCC 4 cut(s) 242, 265, 281, 441
BspCNI CTCAG 2 cut(s) 442, 482
BspFNI CGCG 1 cut(s) 255
BspHI TCATGA 1 cut(s) 612
BspPI GGATC 3 cut(s) 302, 324, 428
BsrI ACTGG 3 cut(s) 163, 318, 486
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 4 cut(s) 154, 294, 316, 420
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 418, 465
Bst4CI ACNGT 2 cut(s) 566, 587
BstC8I GCNNGC 3 cut(s) 86, 103, 263
BstDEI CTNAG 3 cut(s) 290, 450, 469
BstDSI CCRYGG 1 cut(s) 477
BstF5I GGATG 3 cut(s) 113, 444, 535
BstFNI CGCG 1 cut(s) 255
BstKTI GATC 4 cut(s) 157, 297, 319, 423
BstMBI GATC 4 cut(s) 154, 294, 316, 420
BstNI CCWGG 2 cut(s) 418, 465
BstSCI CCNGG 4 cut(s) 131, 387, 416, 463
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 368, 710
BstV2I GAAGAC 1 cut(s) 26
BsuRI GGCC 4 cut(s) 242, 265, 281, 441
BtgI CCRYGG 1 cut(s) 477
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 3 cut(s) 113, 444, 535
BtsIMutI CAGTG 1 cut(s) 311
Cac8I GCNNGC 3 cut(s) 86, 103, 263
CciI TCATGA 1 cut(s) 612
Cfr13I GGNCC 2 cut(s) 160, 263
Csp6I GTAC 1 cut(s) 605
CviAII CATG 5 cut(s) 267, 328, 478, 613, 700
CviQI GTAC 1 cut(s) 605
DdeI CTNAG 3 cut(s) 290, 450, 469
DpnI GATC 4 cut(s) 156, 296, 318, 422
DpnII GATC 4 cut(s) 154, 294, 316, 420
DraI TTTAAA 1 cut(s) 658
EaeI YGGCCR 2 cut(s) 240, 279
EciI GGCGGA 1 cut(s) 4
Eco130I CCWWGG 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 416, 463
EcoT14I CCWWGG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 5 cut(s) 270, 331, 481, 616, 703
FaqI GGGAC 2 cut(s) 135, 575
FatI CATG 5 cut(s) 266, 327, 477, 612, 699
FauI CCCGC 1 cut(s) 254
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 6 cut(s) 89, 129, 256, 259, 357, 724
FokI GGATG 3 cut(s) 100, 431, 542
Fsp4HI GCNGC 6 cut(s) 89, 129, 256, 259, 357, 724
FspBI CTAG 2 cut(s) 147, 727
GluI GCNGC 6 cut(s) 89, 129, 256, 259, 357, 724
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 4 cut(s) 242, 265, 281, 441
HapII CCGG 4 cut(s) 53, 69, 132, 389
Hin1II CATG 5 cut(s) 270, 331, 481, 616, 703
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 4 cut(s) 302, 344, 454, 482
HpaII CCGG 4 cut(s) 53, 69, 132, 389
HphI GGTGA 4 cut(s) 466, 566, 578, 599
Hpy166II GTNNAC 2 cut(s) 196, 412
Hpy188I TCNGA 2 cut(s) 273, 582
Hpy188III TCNNGA 5 cut(s) 59, 152, 158, 552, 613
Hpy8I GTNNAC 2 cut(s) 196, 412
Hpy99I CGWCG 5 cut(s) 83, 124, 197, 200, 302
HpyAV CCTTC 3 cut(s) 325, 386, 587
HpyCH4III ACNGT 2 cut(s) 566, 587
HpyCH4IV ACGT 2 cut(s) 31, 119
HpyCH4V TGCA 4 cut(s) 248, 644, 667, 712
HpyF3I CTNAG 3 cut(s) 290, 450, 469
HpySE526I ACGT 2 cut(s) 31, 119
Hsp92II CATG 5 cut(s) 270, 331, 481, 616, 703
Kzo9I GATC 4 cut(s) 154, 294, 316, 420
LmnI GCTCC 2 cut(s) 71, 110
Lsp1109I GCAGC 2 cut(s) 368, 710
LweI GCATC 4 cut(s) 235, 257, 501, 699
MaeI CTAG 2 cut(s) 147, 727
MaeII ACGT 2 cut(s) 31, 119
MaeIII GTNAC 5 cut(s) 226, 472, 587, 626, 674
MalI GATC 4 cut(s) 156, 296, 318, 422
MboI GATC 4 cut(s) 154, 294, 316, 420
MboII GAAGA 2 cut(s) 26, 449
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 1 cut(s) 368
MluNI TGGCCA 1 cut(s) 281
MlyI GAGTC 2 cut(s) 311, 353
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 6 cut(s) 188, 212, 221, 452, 471, 592
Mox20I TGGCCA 1 cut(s) 281
Mph1103I ATGCAT 1 cut(s) 250
MscI TGGCCA 1 cut(s) 281
MseI TTAA 1 cut(s) 657
Msp20I TGGCCA 1 cut(s) 281
MspI CCGG 4 cut(s) 53, 69, 132, 389
MspR9I CCNGG 4 cut(s) 133, 389, 418, 465
MvaI CCWGG 2 cut(s) 418, 465
MvnI CGCG 1 cut(s) 255
NciI CCSGG 2 cut(s) 133, 389
NcoI CCATGG 1 cut(s) 477
NdeII GATC 4 cut(s) 154, 294, 316, 420
NlaIII CATG 5 cut(s) 270, 331, 481, 616, 703
NmuCI GTSAC 4 cut(s) 226, 472, 587, 626
NsiI ATGCAT 1 cut(s) 250
PagI TCATGA 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 679
PfeI GAWTC 2 cut(s) 454, 482
PflFI GACNNNGTC 1 cut(s) 30
PfoI TCCNGGA 1 cut(s) 416
PkrI GCNGC 6 cut(s) 90, 130, 257, 260, 358, 725
PleI GAGTC 2 cut(s) 310, 352
PpsI GAGTC 2 cut(s) 310, 352
Psp6I CCWGG 2 cut(s) 416, 463
PspGI CCWGG 2 cut(s) 416, 463
PspPI GGNCC 2 cut(s) 160, 263
PsyI GACNNNGTC 1 cut(s) 30
RsaI GTAC 1 cut(s) 606
RsaNI GTAC 1 cut(s) 605
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 657
SatI GCNGC 6 cut(s) 89, 129, 256, 259, 357, 724
Sau3AI GATC 4 cut(s) 154, 294, 316, 420
Sau96I GGNCC 2 cut(s) 160, 263
SchI GAGTC 2 cut(s) 311, 353
ScrFI CCNGG 4 cut(s) 133, 389, 418, 465
SfaNI GCATC 4 cut(s) 235, 257, 501, 699
SgrDI CGTCGACG 1 cut(s) 194
SinI GGWCC 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SpeI ACTAGT 1 cut(s) 146
Sse9I AATT 1 cut(s) 368
SsiI CCGC 7 cut(s) 15, 89, 129, 255, 258, 261, 498
SspMI CTAG 2 cut(s) 147, 727
StyD4I CCNGG 4 cut(s) 131, 387, 416, 463
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 566, 587
TaiI ACGT 2 cut(s) 34, 122
TaqI TCGA 5 cut(s) 122, 195, 297, 342, 372
TasI AATT 1 cut(s) 368
TauI GCSGC 4 cut(s) 91, 131, 258, 261
TfiI GAWTC 2 cut(s) 454, 482
Tru1I TTAA 1 cut(s) 657
Tru9I TTAA 1 cut(s) 657
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 4 cut(s) 226, 472, 587, 626
TseI GCWGC 2 cut(s) 356, 723
Tsp45I GTSAC 4 cut(s) 226, 472, 587, 626
TspDTI ATGAA 3 cut(s) 344, 601, 688
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 318
Tth111I GACNNNGTC 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 2 cut(s) 147, 727
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.