MD15G1291400.v1.1

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
26961909 .. 26962337
429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1291400.v1.1.491

Sequence Viewer

Length: 429 bp
ATGTGCTTGTTTCTTCCGCATGAAAAAGATGGGCTGCCAGCTTTGGTTGAGAGGGTTTGTACTGAGCCCGGCTTCTTGGATCACCATCTTCCGAACACAAGAGTTAGAGTGGGTGACTTCAGAATTCCAAAGTTTAAGATTACTTCCAGTTTTGAAGCTTCCCAAGTTCTCAAGGAATTAGGGCTGGTGTTGCCTTTCGAAGTTGATCCATATAATGGAGGTAATTTGACAGAGATGGTGGACTTACCTCCGGGTGAGGTCCCCTTGGTTTCAAGTTTATTTCATAAATCCTTCATCGAAGTTAATGAAAATGGATATTTCATAAATCCTTCATCGAAGTTAATGAAAATGGAGCGGAAGCTGCCGCCGTTACTTTCTCCTCAAAGGTGGCTGGGTCATGCCGCCCTTGTCATCGTCCAAAGCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

16.01

Weight (kDa)

6.51

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 1 - 113 8.8e-12 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 355
AciI CCGC 4 cut(s) 17, 355, 365, 402
AclWI GGATC 2 cut(s) 87, 200
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 103
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 2 cut(s) 155, 273
AluBI AGCT 3 cut(s) 41, 158, 361
AluI AGCT 3 cut(s) 41, 158, 361
AlwI GGATC 2 cut(s) 87, 200
ApeKI GCWGC 2 cut(s) 34, 361
ApoI RAATTY 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 2 cut(s) 69, 252
AsuHPI GGTGA 3 cut(s) 74, 125, 266
AsuII TTCGAA 1 cut(s) 198
AvaII GGWCC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 21, 348
BccI CCATC 3 cut(s) 23, 93, 229
BceAI ACGGC 1 cut(s) 352
BcnI CCSGG 2 cut(s) 69, 252
BisI GCNGC 4 cut(s) 35, 362, 365, 402
BlsI GCNGC 4 cut(s) 36, 363, 366, 403
Bme1390I CCNGG 2 cut(s) 69, 252
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 2 cut(s) 69, 252
Bpu14I TTCGAA 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 69, 252
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 147
Bse8I GATNNNNATC 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 2 cut(s) 21, 348
BseYI CCCAGC 1 cut(s) 391
BsiSI CCGG 2 cut(s) 69, 251
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 245
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 79, 205
BspACI CCGC 4 cut(s) 17, 355, 365, 402
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 2 cut(s) 87, 200
BspT104I TTCGAA 1 cut(s) 198
BsrBI CCGCTC 1 cut(s) 355
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 2 cut(s) 79, 205
BssT1I CCWWGG 1 cut(s) 264
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 63
BstKTI GATC 2 cut(s) 82, 208
BstMBI GATC 2 cut(s) 79, 205
BstMWI GCNNNNNNNGC 2 cut(s) 190, 361
BstSCI CCNGG 2 cut(s) 67, 250
BstV1I GCAGC 2 cut(s) 21, 348
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 60
CviAII CATG 2 cut(s) 20, 398
CviJI RGCY 9 cut(s) 34, 41, 67, 72, 158, 184, 361, 391, 423
CviKI_1 RGCY 9 cut(s) 34, 41, 67, 72, 158, 184, 361, 391, 423
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 63
DpnI GATC 2 cut(s) 81, 207
DpnII GATC 2 cut(s) 79, 205
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 2 cut(s) 23, 401
FaiI YATR 6 cut(s) 21, 211, 213, 285, 323, 399
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 19, 397
Fnu4HI GCNGC 4 cut(s) 35, 362, 365, 402
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 35, 362, 365, 402
GluI GCNGC 4 cut(s) 35, 362, 365, 402
GsaI CCCAGC 1 cut(s) 395
HapII CCGG 2 cut(s) 69, 251
Hin1II CATG 2 cut(s) 23, 401
HindIII AAGCTT 1 cut(s) 156
HpaII CCGG 2 cut(s) 69, 251
HphI GGTGA 3 cut(s) 74, 125, 266
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 93, 122
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 2 cut(s) 301, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 361
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 2 cut(s) 23, 401
Kzo9I GATC 2 cut(s) 79, 205
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 6 cut(s) 51, 82, 160, 170, 264, 377
Lsp1109I GCAGC 2 cut(s) 21, 348
MaeIII GTNAC 2 cut(s) 113, 369
MalI GATC 2 cut(s) 81, 207
MbiI CCGCTC 1 cut(s) 355
MboI GATC 2 cut(s) 79, 205
MboII GAAGA 2 cut(s) 5, 80
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 3 cut(s) 123, 176, 223
MnlI CCTC 5 cut(s) 45, 212, 250, 258, 390
MseI TTAA 3 cut(s) 135, 303, 341
MspI CCGG 2 cut(s) 69, 251
MspR9I CCNGG 2 cut(s) 69, 252
MwoI GCNNNNNNNGC 2 cut(s) 190, 361
NciI CCSGG 2 cut(s) 69, 252
NdeII GATC 2 cut(s) 79, 205
NlaIII CATG 2 cut(s) 23, 401
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 113
NspV TTCGAA 1 cut(s) 198
PflMI CCANNNNNTGG 1 cut(s) 215
PkrI GCNGC 4 cut(s) 36, 363, 366, 403
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 259
PspPPI RGGWCCY 1 cut(s) 259
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SaqAI TTAA 3 cut(s) 135, 303, 341
SatI GCNGC 4 cut(s) 35, 362, 365, 402
Sau3AI GATC 2 cut(s) 79, 205
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 69, 252
SduI GDGCHC 1 cut(s) 69
SetI ASST 7 cut(s) 43, 160, 223, 250, 261, 363, 389
SfuI TTCGAA 1 cut(s) 198
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 3 cut(s) 123, 176, 223
SsiI CCGC 4 cut(s) 17, 355, 365, 402
StyD4I CCNGG 2 cut(s) 67, 250
StyI CCWWGG 1 cut(s) 264
TaqI TCGA 3 cut(s) 198, 297, 335
TasI AATT 3 cut(s) 123, 176, 223
TatI WGTACW 1 cut(s) 59
TauI GCSGC 2 cut(s) 367, 404
Tru1I TTAA 3 cut(s) 135, 303, 341
Tru9I TTAA 3 cut(s) 135, 303, 341
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 2 cut(s) 34, 361
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 7 cut(s) 36, 272, 283, 310, 321, 321, 359
Van91I CCANNNNNTGG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.