RchiOBHm_Chr2g0122001

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000163
Physical Location & Seq
Forward (+)
34865274 .. 34866417
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49444

Sequence Viewer

Length: 1071 bp
ATGGATTACAAAGATCTCAAAGCTCTCCGAAAACCCATCAGCAACCAAACCGATGTGGCACTGAAGATAACAAAGCAACTCCTTGAATCTGAATTCAAGGACAAGAACCTGATCTTCTCCCCTCTATCCATCCACATCGTCCTGAGCTTAATAGCCGCCCGGACAAACAATCCCCAGTTTCTCTCTTTTCTCAAGTCGAAGTCCATCGACGACCTCAATTCCCTCGCCTTCAATCTCATCACTTCCGTTTTGGCCGACTCACCCAGCAGAGGCGGGCCACGTTTGAACGCTACAAACGGTCTCTGGGTCGACGAGTCTATTCCTCTGGAGGACTCCTACAAACAAGTCGTGTTGGATTCTTACAAGGCGGCTCTAAATCAAGTCGATTTCAAAACAGATCCGGAACAAGTGAGAATCCAAGTGAACTCATGGGTTGATAAAGAGACCAGAGGCCTTATCCCTGAGATTCTTCCTCCTGGCTCAGTCGGTAGCGGGATGTGTCTCATATTTGCAAATGCCTTGTACTTCAAAGCAACTTGGGACGACGATTTCTTCTATGAACCACCGAACTCGAAAGACCATAAAGATTGTGCTTTAGAGGATTTTGACAATGGCACATATGCAGACGACCCCCGATATTTCTCTATGTTGTGGTTACTTCCGGATGCAAGAGATGGGTTGCCGGCTCTGACTGAGAGAGTTTGTTCCGAGTCCAGGTTTCTAGACCGCCATCTTAATAGTTTTACGACTGTTAGAGTGAAGAAATTCTTGATTCCAAAGTTTAAGATTTCATCCGGGTTTGAAGCTTCGGGTGTTCTGAAGAAAATAGGGCTGGGGGATGGTTGTGATTTAATGGCGATATTTCACGAATCTGTAATAGACGTTGATGAAAATGGCACAACAGCTGCAGCTGCTACTTGTGCTGAAACGTGGGATTGCGATGGTGACTTCTCCAAACCTAAGGAGATAGACGAATTTGTGGCTGACCACCCCTTCATGTTTCTCATAAGGGAAAACAGAACCAGAACGGTGCTGTTCATGGGGCAGGTGCTCAATCCTCTTTCAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

356

Amino Acids

39.88

Weight (kDa)

4.93

Isoelectric Point (pI)

23.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 15 - 186 2.6e-33 Serpin (serine protease inhibitor)
Serpin PF00079 214 - 353 2.8e-24 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1036
Acc36I ACCTGC 1 cut(s) 1036
AccI GTMKAC 1 cut(s) 309
AccIII TCCGGA 2 cut(s) 400, 661
AciI CCGC 5 cut(s) 156, 273, 368, 492, 727
AclWI GGATC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 3 cut(s) 92, 764, 974
AcuI CTGAAG 2 cut(s) 83, 839
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 3 cut(s) 269, 714, 1064
AgsI TTSAA 7 cut(s) 86, 97, 232, 286, 391, 529, 803
AjnI CCWGG 2 cut(s) 475, 713
AluBI AGCT 5 cut(s) 23, 147, 806, 905, 911
AluI AGCT 5 cut(s) 23, 147, 806, 905, 911
Alw21I GWGCWC 1 cut(s) 1053
Alw26I GTCTC 3 cut(s) 305, 437, 506
AlwI GGATC 1 cut(s) 392
Aor13HI TCCGGA 2 cut(s) 400, 661
AoxI GGCC 3 cut(s) 252, 275, 451
ApeKI GCWGC 3 cut(s) 905, 908, 911
ApoI RAATTY 3 cut(s) 92, 764, 974
Asp700I GAANNNNTTC 1 cut(s) 764
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 2 cut(s) 160, 796
AsuHPI GGTGA 2 cut(s) 252, 956
AxyI CCTNAGG 1 cut(s) 960
Bbv12I GWGCWC 1 cut(s) 1053
BbvI GCAGC 3 cut(s) 892, 898, 920
BccI CCATC 7 cut(s) 44, 137, 212, 668, 738, 833, 935
BciT130I CCWGG 2 cut(s) 477, 715
BcnI CCSGG 2 cut(s) 160, 796
BcoDI GTCTC 3 cut(s) 305, 437, 506
BfaI CTAG 1 cut(s) 722
BfmI CTRYAG 1 cut(s) 906
BfuAI ACCTGC 1 cut(s) 1036
BglII AGATCT 1 cut(s) 13
BisI GCNGC 5 cut(s) 156, 369, 906, 909, 912
BlsI GCNGC 5 cut(s) 157, 370, 907, 910, 913
Bme1390I CCNGG 4 cut(s) 160, 477, 715, 796
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 4 cut(s) 160, 477, 715, 796
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 655
BmuI ACTGGG 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 2 cut(s) 160, 796
BsaI GGTCTC 2 cut(s) 305, 437
BsaWI WCCGGW 2 cut(s) 400, 661
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 714, 1064
Bse118I RCCGGY 1 cut(s) 682
Bse1I ACTGG 1 cut(s) 175
Bse21I CCTNAGG 1 cut(s) 960
BseAI TCCGGA 2 cut(s) 400, 661
BseBI CCWGG 2 cut(s) 477, 715
BseGI GGATG 5 cut(s) 129, 501, 670, 791, 844
BseLI CCNNNNNNNGG 3 cut(s) 269, 714, 1064
BseMII CTCAG 4 cut(s) 134, 453, 495, 684
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 3 cut(s) 892, 898, 920
BseYI CCCAGC 2 cut(s) 263, 832
BshFI GGCC 3 cut(s) 254, 277, 453
BsiHKAI GWGCWC 1 cut(s) 1053
BsiSI CCGG 5 cut(s) 160, 401, 662, 683, 795
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 3 cut(s) 269, 714, 1064
BsmAI GTCTC 3 cut(s) 305, 437, 506
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 3 cut(s) 254, 277, 453
Bso31I GGTCTC 2 cut(s) 305, 437
Bsp1286I GDGCHC 1 cut(s) 1053
Bsp13I TCCGGA 2 cut(s) 400, 661
Bsp143I GATC 3 cut(s) 13, 111, 397
BspACI CCGC 5 cut(s) 156, 273, 368, 492, 727
BspANI GGCC 3 cut(s) 254, 277, 453
BspCNI CTCAG 4 cut(s) 135, 454, 494, 685
BspEI TCCGGA 2 cut(s) 400, 661
BspMAI CTGCAG 1 cut(s) 910
BspMI ACCTGC 1 cut(s) 1036
BspPI GGATC 1 cut(s) 392
BspTNI GGTCTC 2 cut(s) 305, 437
BsrFI RCCGGY 1 cut(s) 682
BsrI ACTGG 1 cut(s) 175
BssAI RCCGGY 1 cut(s) 682
BssMI GATC 3 cut(s) 13, 111, 397
Bst2UI CCWGG 2 cut(s) 477, 715
Bst4CI ACNGT 3 cut(s) 299, 751, 1030
BstC8I GCNNGC 2 cut(s) 275, 684
BstDEI CTNAG 5 cut(s) 143, 462, 481, 693, 960
BstENI CCTNNNNNAGG 1 cut(s) 1062
BstF5I GGATG 5 cut(s) 129, 501, 670, 791, 844
BstKTI GATC 3 cut(s) 16, 114, 400
BstMAI GTCTC 3 cut(s) 305, 437, 506
BstMBI GATC 3 cut(s) 13, 111, 397
BstMWI GCNNNNNNNGC 2 cut(s) 911, 920
BstNI CCWGG 2 cut(s) 477, 715
BstSCI CCNGG 4 cut(s) 158, 475, 713, 794
BstSFI CTRYAG 1 cut(s) 906
BstV1I GCAGC 3 cut(s) 892, 898, 920
BstX2I RGATCY 2 cut(s) 13, 397
BstYI RGATCY 2 cut(s) 13, 397
Bsu36I CCTNAGG 1 cut(s) 960
BsuRI GGCC 3 cut(s) 254, 277, 453
BtgZI GCGATG 1 cut(s) 954
BtsCI GGATG 5 cut(s) 129, 501, 670, 791, 844
BtsIMutI CAGTG 1 cut(s) 59
BveI ACCTGC 1 cut(s) 1036
Cac8I GCNNGC 2 cut(s) 275, 684
Cfr10I RCCGGY 1 cut(s) 682
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 523
CviAII CATG 3 cut(s) 429, 997, 1039
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 5 cut(s) 143, 462, 481, 693, 960
DpnI GATC 3 cut(s) 15, 113, 399
DpnII GATC 3 cut(s) 13, 111, 397
EaeI YGGCCR 1 cut(s) 252
Eco147I AGGCCT 1 cut(s) 453
Eco31I GGTCTC 2 cut(s) 305, 437
Eco57I CTGAAG 2 cut(s) 83, 839
Eco81I CCTNAGG 1 cut(s) 960
EcoNI CCTNNNNNAGG 1 cut(s) 1062
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 475, 713
FaeI CATG 3 cut(s) 432, 1000, 1042
FalI AAGNNNNNCTT 2 cut(s) 752, 784
FaqI GGGAC 1 cut(s) 554
FatI CATG 3 cut(s) 428, 996, 1038
FauI CCCGC 2 cut(s) 266, 485
FauNDI CATATG 1 cut(s) 619
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 5 cut(s) 156, 369, 906, 909, 912
FokI GGATG 5 cut(s) 116, 508, 677, 778, 851
Fsp4HI GCNGC 5 cut(s) 156, 369, 906, 909, 912
FspBI CTAG 1 cut(s) 722
GluI GCNGC 5 cut(s) 156, 369, 906, 909, 912
GsaI CCCAGC 2 cut(s) 267, 836
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 3 cut(s) 254, 277, 453
HapII CCGG 5 cut(s) 160, 401, 662, 683, 795
Hin1II CATG 3 cut(s) 432, 1000, 1042
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 804
HpaII CCGG 5 cut(s) 160, 401, 662, 683, 795
HphI GGTGA 2 cut(s) 252, 956
Hpy166II GTNNAC 2 cut(s) 310, 424
Hpy188I TCNGA 5 cut(s) 29, 91, 690, 709, 819
Hpy188III TCNNGA 7 cut(s) 142, 326, 401, 662, 722, 769, 866
Hpy8I GTNNAC 2 cut(s) 310, 424
Hpy99I CGWCG 3 cut(s) 212, 314, 548
HpyAV CCTTC 2 cut(s) 238, 1003
HpyCH4III ACNGT 3 cut(s) 299, 751, 1030
HpyCH4IV ACGT 3 cut(s) 280, 882, 929
HpyCH4V TGCA 4 cut(s) 512, 623, 668, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 911, 920
HpyF3I CTNAG 5 cut(s) 143, 462, 481, 693, 960
HpySE526I ACGT 3 cut(s) 280, 882, 929
Hsp92II CATG 3 cut(s) 432, 1000, 1042
Kpn2I TCCGGA 2 cut(s) 400, 661
KroI GCCGGC 1 cut(s) 682
KroNI GCCGGC 1 cut(s) 684
Kzo9I GATC 3 cut(s) 13, 111, 397
Lsp1109I GCAGC 3 cut(s) 892, 898, 920
LweI GCATC 1 cut(s) 655
MaeI CTAG 1 cut(s) 722
MaeII ACGT 3 cut(s) 280, 882, 929
MaeIII GTNAC 2 cut(s) 654, 944
MalI GATC 3 cut(s) 15, 113, 399
MboI GATC 3 cut(s) 13, 111, 397
MboII GAAGA 6 cut(s) 76, 106, 461, 544, 772, 832
MflI RGATCY 2 cut(s) 13, 397
MhlI GDGCHC 1 cut(s) 1053
MluCI AATT 4 cut(s) 92, 217, 764, 974
MlyI GAGTC 4 cut(s) 251, 323, 326, 719
MmeI TCCRAC 1 cut(s) 333
MroI TCCGGA 2 cut(s) 400, 661
MroNI GCCGGC 1 cut(s) 682
MroXI GAANNNNTTC 1 cut(s) 764
MseI TTAA 4 cut(s) 149, 735, 783, 851
MspA1I CMGCKG 2 cut(s) 905, 911
MspI CCGG 5 cut(s) 160, 401, 662, 683, 795
MspR9I CCNGG 4 cut(s) 160, 477, 715, 796
MvaI CCWGG 2 cut(s) 477, 715
MwoI GCNNNNNNNGC 2 cut(s) 911, 920
NaeI GCCGGC 1 cut(s) 684
NciI CCSGG 2 cut(s) 160, 796
NdeI CATATG 1 cut(s) 619
NdeII GATC 3 cut(s) 13, 111, 397
NgoMIV GCCGGC 1 cut(s) 682
NlaIII CATG 3 cut(s) 432, 1000, 1042
NmuCI GTSAC 1 cut(s) 944
PaqCI CACCTGC 1 cut(s) 1036
PceI AGGCCT 1 cut(s) 453
PdiI GCCGGC 1 cut(s) 684
PdmI GAANNNNTTC 1 cut(s) 764
PfeI GAWTC 6 cut(s) 86, 356, 414, 466, 772, 869
PkrI GCNGC 5 cut(s) 157, 370, 907, 910, 913
PleI GAGTC 4 cut(s) 251, 322, 326, 718
PpsI GAGTC 4 cut(s) 251, 322, 326, 718
Psp6I CCWGG 2 cut(s) 475, 713
PspFI CCCAGC 2 cut(s) 263, 832
PspGI CCWGG 2 cut(s) 475, 713
PspPI GGNCC 1 cut(s) 275
PstI CTGCAG 1 cut(s) 910
PsuI RGATCY 2 cut(s) 13, 397
PvuII CAGCTG 2 cut(s) 905, 911
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
SalI GTCGAC 1 cut(s) 308
SaqAI TTAA 4 cut(s) 149, 735, 783, 851
SatI GCNGC 5 cut(s) 156, 369, 906, 909, 912
Sau3AI GATC 3 cut(s) 13, 111, 397
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 4 cut(s) 251, 323, 326, 719
ScrFI CCNGG 4 cut(s) 160, 477, 715, 796
SduI GDGCHC 1 cut(s) 1053
SfaNI GCATC 1 cut(s) 655
SfcI CTRYAG 1 cut(s) 906
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 4 cut(s) 92, 217, 764, 974
SseBI AGGCCT 1 cut(s) 453
SsiI CCGC 5 cut(s) 156, 273, 368, 492, 727
SspMI CTAG 1 cut(s) 722
StuI AGGCCT 1 cut(s) 453
StyD4I CCNGG 4 cut(s) 158, 475, 713, 794
TaaI ACNGT 3 cut(s) 299, 751, 1030
TaiI ACGT 3 cut(s) 283, 885, 932
TaqI TCGA 5 cut(s) 197, 207, 309, 384, 572
TasI AATT 4 cut(s) 92, 217, 764, 974
TatI WGTACW 1 cut(s) 522
TauI GCSGC 2 cut(s) 158, 371
TfiI GAWTC 6 cut(s) 86, 356, 414, 466, 772, 869
Tru1I TTAA 4 cut(s) 149, 735, 783, 851
Tru9I TTAA 4 cut(s) 149, 735, 783, 851
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 944
TseI GCWGC 3 cut(s) 905, 908, 911
Tsp45I GTSAC 1 cut(s) 944
TspDTI ATGAA 5 cut(s) 573, 780, 903, 985, 1027
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 1 cut(s) 66
XagI CCTNNNNNAGG 1 cut(s) 1062
XapI RAATTY 3 cut(s) 92, 764, 974
XbaI TCTAGA 1 cut(s) 721
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 764
XspI CTAG 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.