Rroxscaffold_3G00266870

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000163
Physical Location & Seq
Reverse (-)
60043350 .. 60044181
832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266870.1

Sequence Viewer

Length: 756 bp
ATGGTGTCAGTAAACCCATTTAAAAACCAGAACGATGTCACACTGGGAATCACAAAGCACTTGCTTCTGGATGTAGGCAGGGACAACAACATGGTGTATTCGCCGCTGTCCGTCCACGTGGTTCTTGGCCTGATAGCAGCTGGGTCATCAAGAGGAACTAACAGGGACCAGATTCTCAATTTCCTGAAGGCAAAGTCCACCGAGGAACTCAATGACTTTGCTTCCACGCTTGTCCCTCTGGTCTTTGCTGACGGATCCCCAAAGGGAGGGCCTTGCTTATCATTCGCATATAGTGTTTGGCTCGACAAGTCTCTCAGTTTCAAGGCTTCTTTCAAACATATAGTGGACAATGCATACAATGCGGCTTTGAATCAAGTTGACTTTAAGACCAAGCAGAGGAAATCCGATCACAACAAGGTTATCCTTGCTAATGCATTATACTTTAAAGGAGATTGGACTGAGAAGTTCGACGCATCACTTACAAAAACAGATGATTTCCACCTTATCGATGGGAGGAGGTCAGTAAAGGCACCCTTCATGACAAGCTGGAATAAACAATTCATAAGTGCCTTTGACGGTTTCAAAGTCTTAAAGCTTCCTTACGAACAAGGTGGAGATCACATTCGGCGTTTCTCCATGTATGTGTATCTTCCAAATGCAATAGATGGCCTGCCAGCTTTAGTTGAGAGAGTTTGTTCAGAGTCTGGATTTGTGGATCGCTACCTTCCCTGCTTTGCAGTTAAAGCTAGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

251

Amino Acids

28.09

Weight (kDa)

8.99

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 9 - 133 1.1e-16 Serpin (serine protease inhibitor)
Serpin PF00079 136 - 231 1e-18 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 529
AciI CCGC 2 cut(s) 104, 362
AclWI GGATC 3 cut(s) 249, 262, 723
AcuI CTGAAG 1 cut(s) 206
AcvI CACGTG 1 cut(s) 118
AfiI CCNNNNNNNGG 2 cut(s) 266, 396
AgsI TTSAA 4 cut(s) 322, 334, 370, 583
AluBI AGCT 6 cut(s) 140, 546, 595, 677, 746, 750
AluI AGCT 6 cut(s) 140, 546, 595, 677, 746, 750
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 3 cut(s) 249, 262, 723
AlwNI CAGNNNCTG 1 cut(s) 704
AoxI GGCC 3 cut(s) 127, 269, 667
ApeKI GCWGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 166, 269
AsuNHI GCTAGC 1 cut(s) 746
AvaII GGWCC 1 cut(s) 166
BamHI GGATCC 1 cut(s) 254
BanI GGYRCC 1 cut(s) 529
BbrPI CACGTG 1 cut(s) 118
BbvI GCAGC 1 cut(s) 149
BccI CCATC 2 cut(s) 503, 659
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 1 cut(s) 747
BisI GCNGC 3 cut(s) 104, 138, 363
BlsI GCNGC 3 cut(s) 105, 139, 364
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 166, 269
BmiI GGNNCC 3 cut(s) 167, 256, 531
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 482
BmtI GCTAGC 1 cut(s) 750
BmuI ACTGGG 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 507
BsaAI YACGTR 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 396
Bse1I ACTGG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 266, 396
BseMII CTCAG 2 cut(s) 328, 450
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 529
BseXI GCAGC 1 cut(s) 149
BseYI CCCAGC 1 cut(s) 140
BshFI GGCC 3 cut(s) 129, 271, 669
BshNI GGYRCC 1 cut(s) 529
BshVI ATCGAT 1 cut(s) 507
BslFI GGGAC 3 cut(s) 95, 179, 218
BslI CCNNNNNNNGG 2 cut(s) 266, 396
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 3 cut(s) 95, 179, 218
BsnI GGCC 3 cut(s) 129, 271, 669
Bsp143I GATC 4 cut(s) 254, 406, 616, 715
BspACI CCGC 2 cut(s) 104, 362
BspANI GGCC 3 cut(s) 129, 271, 669
BspCNI CTCAG 2 cut(s) 327, 451
BspDI ATCGAT 1 cut(s) 507
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 3 cut(s) 167, 256, 531
BspOI GCTAGC 1 cut(s) 750
BspPI GGATC 3 cut(s) 249, 262, 723
BspT107I GGYRCC 1 cut(s) 529
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 4 cut(s) 254, 406, 616, 715
Bst4CI ACNGT 1 cut(s) 578
BstAPI GCANNNNNTGC 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 3 cut(s) 671, 675, 748
BstDEI CTNAG 2 cut(s) 314, 459
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 4 cut(s) 257, 409, 619, 718
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 4 cut(s) 254, 406, 616, 715
BstMWI GCNNNNNNNGC 2 cut(s) 359, 743
BstV1I GCAGC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
Bsu15I ATCGAT 1 cut(s) 507
BsuRI GGCC 3 cut(s) 129, 271, 669
BsuTUI ATCGAT 1 cut(s) 507
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 3 cut(s) 671, 675, 748
CaiI CAGNNNCTG 1 cut(s) 704
CciI TCATGA 1 cut(s) 537
Cfr13I GGNCC 2 cut(s) 166, 269
ClaI ATCGAT 1 cut(s) 507
CseI GACGC 1 cut(s) 479
CviAII CATG 3 cut(s) 91, 538, 637
DdeI CTNAG 2 cut(s) 314, 459
DpnI GATC 4 cut(s) 256, 408, 618, 717
DpnII GATC 4 cut(s) 254, 406, 616, 715
DraI TTTAAA 2 cut(s) 22, 445
Eco47I GGWCC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 206
Eco72I CACGTG 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 269
EcoT22I ATGCAT 2 cut(s) 355, 436
FaeI CATG 3 cut(s) 94, 541, 640
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 3 cut(s) 95, 179, 218
FatI CATG 3 cut(s) 90, 537, 636
Fnu4HI GCNGC 3 cut(s) 104, 138, 363
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 104, 138, 363
FspBI CTAG 1 cut(s) 747
GluI GCNGC 3 cut(s) 104, 138, 363
GsaI CCCAGC 1 cut(s) 144
HaeIII GGCC 3 cut(s) 129, 271, 669
HgaI GACGC 1 cut(s) 479
Hin1II CATG 3 cut(s) 94, 541, 640
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 4 cut(s) 48, 172, 370, 701
Hpy166II GTNNAC 5 cut(s) 13, 115, 198, 346, 379
Hpy188I TCNGA 2 cut(s) 406, 700
Hpy188III TCNNGA 5 cut(s) 68, 150, 184, 538, 705
Hpy8I GTNNAC 5 cut(s) 13, 115, 198, 346, 379
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 3 cut(s) 181, 544, 734
HpyCH4III ACNGT 1 cut(s) 578
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 4 cut(s) 353, 434, 659, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 743
HpyF3I CTNAG 2 cut(s) 314, 459
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 3 cut(s) 94, 541, 640
Kzo9I GATC 4 cut(s) 254, 406, 616, 715
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 482
MaeI CTAG 1 cut(s) 747
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 37
MalI GATC 4 cut(s) 256, 408, 618, 717
MboI GATC 4 cut(s) 254, 406, 616, 715
MboII GAAGA 1 cut(s) 641
MflI RGATCY 1 cut(s) 254
MluCI AATT 2 cut(s) 178, 557
MlyI GAGTC 1 cut(s) 710
MnlI CCTC 7 cut(s) 146, 196, 246, 260, 390, 507, 510
Mph1103I ATGCAT 2 cut(s) 355, 436
MseI TTAA 5 cut(s) 21, 384, 444, 590, 741
MslI CAYNNNNRTG 1 cut(s) 641
MspA1I CMGCKG 2 cut(s) 106, 140
MwoI GCNNNNNNNGC 2 cut(s) 359, 743
NdeII GATC 4 cut(s) 254, 406, 616, 715
NheI GCTAGC 1 cut(s) 746
NlaIII CATG 3 cut(s) 94, 541, 640
NlaIV GGNNCC 3 cut(s) 167, 256, 531
NmuCI GTSAC 1 cut(s) 37
NsiI ATGCAT 2 cut(s) 355, 436
PagI TCATGA 1 cut(s) 537
PfeI GAWTC 3 cut(s) 48, 172, 370
PkrI GCNGC 3 cut(s) 105, 139, 364
PleI GAGTC 1 cut(s) 709
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 1 cut(s) 709
Ppu21I YACGTR 1 cut(s) 118
PspCI CACGTG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 167, 256, 531
PspPI GGNCC 2 cut(s) 166, 269
PstNI CAGNNNCTG 1 cut(s) 704
PsuI RGATCY 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 641
SaqAI TTAA 5 cut(s) 21, 384, 444, 590, 741
SatI GCNGC 3 cut(s) 104, 138, 363
Sau3AI GATC 4 cut(s) 254, 406, 616, 715
Sau96I GGNCC 2 cut(s) 166, 269
SchI GAGTC 1 cut(s) 710
SfaNI GCATC 1 cut(s) 482
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 641
Sse9I AATT 2 cut(s) 178, 557
SsiI CCGC 2 cut(s) 104, 362
SspMI CTAG 1 cut(s) 747
TaaI ACNGT 1 cut(s) 578
TaiI ACGT 1 cut(s) 120
TaqI TCGA 3 cut(s) 303, 468, 507
TasI AATT 2 cut(s) 178, 557
TauI GCSGC 2 cut(s) 106, 365
TfiI GAWTC 3 cut(s) 48, 172, 370
Tru1I TTAA 5 cut(s) 21, 384, 444, 590, 741
Tru9I TTAA 5 cut(s) 21, 384, 444, 590, 741
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 526, 550
TspGWI ACGGA 2 cut(s) 100, 267
TspRI CASTG 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 2 cut(s) 122, 506
XspI CTAG 1 cut(s) 747
Zsp2I ATGCAT 2 cut(s) 355, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.