Rorug07G0107500

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
8394416 .. 8396678
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0107500.1

Sequence Viewer

Length: 324 bp
ATGGCTTCGTTCAGAGCATTCTGGAATAGTCCGATTGGTCCGAAAACCACTCACTTTTGGGGACCTGTTGCAAACTGGGGGTTTGTTGCCGCTGGACTGGCAGATATGAGTAAACCCCCAGAAAAAATTTCTGGAAACATGACAGCAGCAATGTGCGTTTATTCAGCATTATTTATGAGGTTTGCATGGATGGTACAGCCTCGTAACTACCTACTTTTGGCGTGCCATGTCTCGAATGAGACTGTCCAACTCTATCAACTCTCCCGTTGGGCGAAGGGTCAGGGGTATTTGCCCCAGAAGAAGGATGAAGCTGCCACCCAATAA

Protein Analysis

107

Amino Acids

12.02

Weight (kDa)

9.51

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPC PF03650 4 - 100 2.1e-37 Mitochondrial pyruvate carriers
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 90
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 2 cut(s) 217, 301
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 233, 235
ApeKI GCWGC 2 cut(s) 146, 311
ApoI RAATTY 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 38, 62
AvaII GGWCC 2 cut(s) 38, 62
BbvI GCAGC 2 cut(s) 158, 298
BccI CCATC 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 233, 235
BisI GCNGC 3 cut(s) 90, 147, 312
BlsI GCNGC 3 cut(s) 91, 148, 313
Bme18I GGWCC 2 cut(s) 38, 62
BmgT120I GGNCC 2 cut(s) 38, 62
BmiI GGNNCC 1 cut(s) 63
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 301
Bse1I ACTGG 2 cut(s) 80, 102
Bse3DI GCAATG 1 cut(s) 156
BseGI GGATG 2 cut(s) 195, 310
BseLI CCNNNNNNNGG 2 cut(s) 217, 301
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 80, 102
BseXI GCAGC 2 cut(s) 158, 298
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 217, 301
BsmAI GTCTC 2 cut(s) 233, 235
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 17
BspACI CCGC 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 156
BsrI ACTGG 2 cut(s) 80, 102
Bst4CI ACNGT 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 223
BstF5I GGATG 2 cut(s) 195, 310
BstMAI GTCTC 2 cut(s) 233, 235
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 158, 298
BtsCI GGATG 2 cut(s) 195, 310
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 2 cut(s) 38, 62
Csp6I GTAC 1 cut(s) 194
CviAII CATG 3 cut(s) 139, 186, 227
CviJI RGCY 3 cut(s) 5, 199, 311
CviKI_1 RGCY 3 cut(s) 5, 199, 311
CviQI GTAC 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 38, 62
EcoO109I RGGNCCY 1 cut(s) 62
FaeI CATG 3 cut(s) 142, 189, 230
FaiI YATR 5 cut(s) 107, 140, 176, 187, 228
FaqI GGGAC 1 cut(s) 75
FatI CATG 3 cut(s) 138, 185, 226
Fnu4HI GCNGC 3 cut(s) 90, 147, 312
FokI GGATG 2 cut(s) 202, 317
Fsp4HI GCNGC 3 cut(s) 90, 147, 312
GluI GCNGC 3 cut(s) 90, 147, 312
Hin1II CATG 3 cut(s) 142, 189, 230
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 3 cut(s) 14, 33, 42
Hpy188III TCNNGA 3 cut(s) 22, 132, 232
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 268, 295
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 71, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
Hsp92II CATG 3 cut(s) 142, 189, 230
LpnPI CCDG 9 cut(s) 7, 61, 78, 78, 83, 117, 132, 266, 308
Lsp1109I GCAGC 2 cut(s) 158, 298
MaeIII GTNAC 1 cut(s) 203
MboII GAAGA 1 cut(s) 310
MluCI AATT 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 2 cut(s) 171, 210
MspA1I CMGCKG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIII CATG 3 cut(s) 142, 189, 230
NlaIV GGNNCC 1 cut(s) 63
PctI GAATGC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 91, 148, 313
PpuMI RGGWCCY 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 38, 62
PspPPI RGGWCCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SatI GCNGC 3 cut(s) 90, 147, 312
Sau96I GGNCC 2 cut(s) 38, 62
SetI ASST 4 cut(s) 67, 182, 213, 313
SinI GGWCC 2 cut(s) 38, 62
Sse9I AATT 1 cut(s) 126
SsiI CCGC 1 cut(s) 90
TaaI ACNGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 233
TasI AATT 1 cut(s) 126
TauI GCSGC 1 cut(s) 92
TseI GCWGC 2 cut(s) 146, 311
TspDTI ATGAA 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 38, 62
XapI RAATTY 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.