FvH4_6g01280

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000163
Physical Location & Seq
Reverse (-)
691917 .. 692861
945 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01280.t1

Sequence Viewer

Length: 834 bp
ATGGATTTCGAAGCTCCCAAGGCTCTGAAAGAGTCGATCAAAAACCAAACCGAAGTCGGACTGGAGATAACCAAGCAACTCCTTCAAACAGAATTGAGAGACAAGAACATGGTGTTCTCGCCACTCTCCATCCATATAGTGCTTAGCATGATAGCCGCTGGTGAAACAGGTCTTTCTCTGGACCAGTTTCTTTCTGTCCTCAAGTCCAAGACCACAGACCACCTCAACTCCCTCGCCTTCAAACTAGTCACGGCCGTTTTAGCCGACGGCTCCGCCACCGGTGGCCCATGTTTGAACTTCGCCAATGGTCTCTGGATCCACGAGTCTTGTCCTCTTGAACGATCTCACCAGCAAGTTTTGTGCAAGTCTTACAAGGCCAGGCTTAAGCAAGTCCCTGCCGGAACCAGTTCCGAGGAGGTGAGAGTTGAAGTGAACTCATGGGTGGAGGAACAGACACGAGGCCTTATCCCTGAGATTCTTACGCCGGGATCAGGTAATGGGGGTCGCATCAGTGCAAATGCTTTATACTTCAAGGCAACTTGGAGGGAAGAGTACTTCGATGAATCAGATACCAAAGAGTATGTGTTTCACCTTCTTAGGGGAGATAAAGTCGATAAGGTAGCTTACATGACGAGCATGGATGCAATAGATGGACTGCCAGCTCTGGAGCATAGGGTTTGTTCAGAGTCAGGGTTTATAGATGTTCATCTTAGTTCATGGGAGAGTGTTGAAGTTGGTAAGTTTTTGATACCAAGGTTTAAGATTTCTACTAGGTTTGAAGCCTCGGGTATTTTAAGGGAGCTAGGGCTGACGGCTCGTGACTCGAATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

278

Amino Acids

30.73

Weight (kDa)

5.58

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 15 - 215 4e-36 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 156, 273
AclWI GGATC 3 cut(s) 310, 323, 496
AcoI YGGCCR 1 cut(s) 252
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 2 cut(s) 491, 598
AflII CTTAAG 1 cut(s) 383
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 8 cut(s) 86, 241, 295, 338, 428, 532, 731, 779
AhlI ACTAGT 1 cut(s) 244
AjnI CCWGG 1 cut(s) 377
AluBI AGCT 4 cut(s) 14, 623, 662, 802
AluI AGCT 4 cut(s) 14, 623, 662, 802
Alw26I GTCTC 2 cut(s) 93, 314
AlwI GGATC 3 cut(s) 310, 323, 496
Ama87I CYCGRG 1 cut(s) 784
AoxI GGCC 4 cut(s) 252, 283, 375, 460
AsiGI ACCGGT 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 406
AspS9I GGNCC 2 cut(s) 181, 284
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 4 cut(s) 173, 338, 430, 581
AsuII TTCGAA 1 cut(s) 9
AvaI CYCGRG 1 cut(s) 784
AvaII GGWCC 1 cut(s) 181
BaeI ACNNNNGTAYC 2 cut(s) 740, 773
BamHI GGATCC 1 cut(s) 315
BauI CACGAG 3 cut(s) 320, 456, 816
BccI CCATC 2 cut(s) 137, 644
BceAI ACGGC 4 cut(s) 239, 267, 283, 828
BciT130I CCWGG 1 cut(s) 379
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 2 cut(s) 93, 314
BcuI ACTAGT 1 cut(s) 244
BfaI CTAG 3 cut(s) 245, 771, 803
BfrI CTTAAG 1 cut(s) 383
BisI GCNGC 1 cut(s) 156
BlpI GCTNAGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 554
Bme1390I CCNGG 2 cut(s) 379, 486
Bme18I GGWCC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 784
BmgT120I GGNCC 2 cut(s) 181, 284
BmiI GGNNCC 3 cut(s) 271, 317, 403
BmrFI CCNGG 2 cut(s) 379, 486
BmsI GCATC 2 cut(s) 516, 631
BpmI CTGGAG 2 cut(s) 83, 686
Bpu1102I GCTNAGC 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 486
BsaBI GATNNNNATC 1 cut(s) 705
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 4 cut(s) 18, 411, 752, 783
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 594, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 598
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 3 cut(s) 66, 184, 405
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 4 cut(s) 18, 411, 752, 783
BseGI GGATG 2 cut(s) 129, 646
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 2 cut(s) 491, 598
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 3 cut(s) 66, 184, 405
BseRI GAGGAG 1 cut(s) 428
BseX3I CGGCCG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 4 cut(s) 254, 285, 377, 462
BshTI ACCGGT 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 784
BsiSI CCGG 3 cut(s) 279, 399, 485
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 491, 598
BsmAI GTCTC 2 cut(s) 93, 314
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 4 cut(s) 254, 285, 377, 462
Bso31I GGTCTC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 784
Bsp119I TTCGAA 1 cut(s) 9
Bsp143I GATC 4 cut(s) 36, 315, 341, 488
Bsp1720I GCTNAGC 1 cut(s) 143
BspACI CCGC 2 cut(s) 156, 273
BspANI GGCC 4 cut(s) 254, 285, 377, 462
BspCNI CTCAG 1 cut(s) 463
BspLI GGNNCC 3 cut(s) 271, 317, 403
BspPI GGATC 3 cut(s) 310, 323, 496
BspT104I TTCGAA 1 cut(s) 9
BspTI CTTAAG 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 314
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 3 cut(s) 66, 184, 405
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 4 cut(s) 18, 411, 752, 783
BssMI GATC 4 cut(s) 36, 315, 341, 488
BssSI CACGAG 3 cut(s) 320, 456, 816
BssT1I CCWWGG 2 cut(s) 18, 752
Bst2BI CACGAG 3 cut(s) 320, 456, 816
Bst2UI CCWGG 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 543
BstAFI CTTAAG 1 cut(s) 383
BstBI TTCGAA 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 4 cut(s) 143, 471, 596, 710
BstF5I GGATG 2 cut(s) 129, 646
BstKTI GATC 4 cut(s) 39, 318, 344, 491
BstMAI GTCTC 2 cut(s) 93, 314
BstMBI GATC 4 cut(s) 36, 315, 341, 488
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 2 cut(s) 20, 260
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 377, 484
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BstZI CGGCCG 1 cut(s) 252
BsuRI GGCC 4 cut(s) 254, 285, 377, 462
BtsCI GGATG 2 cut(s) 129, 646
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 1 cut(s) 660
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 2 cut(s) 181, 284
Csp6I GTAC 1 cut(s) 553
CspAI ACCGGT 1 cut(s) 278
CspCI CAANNNNNGTGG 2 cut(s) 308, 343
CviAII CATG 7 cut(s) 109, 148, 288, 438, 628, 637, 717
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 4 cut(s) 143, 471, 596, 710
DpnI GATC 4 cut(s) 38, 317, 343, 490
DpnII GATC 4 cut(s) 36, 315, 341, 488
EaeI YGGCCR 1 cut(s) 252
EagI CGGCCG 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
EciI GGCGGA 1 cut(s) 262
EclXI CGGCCG 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 18, 752
Eco147I AGGCCT 1 cut(s) 462
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 181
Eco52I CGGCCG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 784
EcoRII CCWGG 1 cut(s) 377
EcoT14I CCWWGG 2 cut(s) 18, 752
ErhI CCWWGG 2 cut(s) 18, 752
FaeI CATG 7 cut(s) 112, 151, 291, 441, 631, 640, 720
FaqI GGGAC 1 cut(s) 377
FatI CATG 7 cut(s) 108, 147, 287, 437, 627, 636, 716
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 2 cut(s) 116, 653
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 245, 771, 803
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 2 cut(s) 83, 686
HaeIII GGCC 4 cut(s) 254, 285, 377, 462
HapII CCGG 3 cut(s) 279, 399, 485
Hin1II CATG 7 cut(s) 112, 151, 291, 441, 631, 640, 720
HinfI GANTC 6 cut(s) 32, 323, 475, 563, 686, 821
HpaII CCGG 3 cut(s) 279, 399, 485
HphI GGTGA 4 cut(s) 173, 338, 430, 581
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 5 cut(s) 27, 59, 412, 568, 685
Hpy188III TCNNGA 5 cut(s) 179, 313, 335, 665, 818
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 92, 247, 602
HpyCH4V TGCA 3 cut(s) 363, 515, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 260
HpyF3I CTNAG 4 cut(s) 143, 471, 596, 710
Hsp92II CATG 7 cut(s) 112, 151, 291, 441, 631, 640, 720
Kzo9I GATC 4 cut(s) 36, 315, 341, 488
LmnI GCTCC 4 cut(s) 19, 275, 667, 799
LweI GCATC 2 cut(s) 516, 631
MaeI CTAG 3 cut(s) 245, 771, 803
MaeIII GTNAC 2 cut(s) 247, 818
MalI GATC 4 cut(s) 38, 317, 343, 490
MboI GATC 4 cut(s) 36, 315, 341, 488
MboII GAAGA 1 cut(s) 560
MflI RGATCY 1 cut(s) 315
MluCI AATT 1 cut(s) 92
MlyI GAGTC 4 cut(s) 41, 332, 695, 815
MmeI TCCRAC 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 406
MseI TTAA 3 cut(s) 384, 759, 794
MspA1I CMGCKG 1 cut(s) 158
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 3 cut(s) 279, 399, 485
MspR9I CCNGG 2 cut(s) 379, 486
MvaI CCWGG 1 cut(s) 379
MwoI GCNNNNNNNGC 2 cut(s) 20, 260
NciI CCSGG 1 cut(s) 486
NdeII GATC 4 cut(s) 36, 315, 341, 488
NlaIII CATG 7 cut(s) 112, 151, 291, 441, 631, 640, 720
NlaIV GGNNCC 3 cut(s) 271, 317, 403
NmuCI GTSAC 2 cut(s) 247, 818
NspV TTCGAA 1 cut(s) 9
PceI AGGCCT 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 406
PfeI GAWTC 2 cut(s) 475, 563
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 4 cut(s) 40, 331, 694, 815
PpsI GAGTC 4 cut(s) 40, 331, 694, 815
Psp6I CCWGG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 3 cut(s) 271, 317, 403
PspPI GGNCC 2 cut(s) 181, 284
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
SaqAI TTAA 3 cut(s) 384, 759, 794
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 4 cut(s) 36, 315, 341, 488
Sau96I GGNCC 2 cut(s) 181, 284
ScaI AGTACT 1 cut(s) 554
SchI GAGTC 4 cut(s) 41, 332, 695, 815
ScrFI CCNGG 2 cut(s) 379, 486
SfaNI GCATC 2 cut(s) 516, 631
SfuI TTCGAA 1 cut(s) 9
SgrAI CRCCGGYG 1 cut(s) 278
SinI GGWCC 1 cut(s) 181
SmlI CTYRAG 2 cut(s) 200, 383
SmoI CTYRAG 2 cut(s) 200, 383
SpeI ACTAGT 1 cut(s) 244
Sse9I AATT 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 462
SsiI CCGC 2 cut(s) 156, 273
SspMI CTAG 3 cut(s) 245, 771, 803
StuI AGGCCT 1 cut(s) 462
StyD4I CCNGG 2 cut(s) 377, 484
StyI CCWWGG 2 cut(s) 18, 752
TaqI TCGA 5 cut(s) 9, 35, 558, 612, 824
TasI AATT 1 cut(s) 92
TatI WGTACW 1 cut(s) 552
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 2 cut(s) 475, 563
Tru1I TTAA 3 cut(s) 384, 759, 794
Tru9I TTAA 3 cut(s) 384, 759, 794
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 2 cut(s) 247, 818
Tsp45I GTSAC 2 cut(s) 247, 818
TspDTI ATGAA 3 cut(s) 576, 695, 705
TspRI CASTG 1 cut(s) 517
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 406
XspI CTAG 3 cut(s) 245, 771, 803
ZrmI AGTACT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.