FvH4_5g21540

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
12994505 .. 12996524
2020 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21540.t1

Sequence Viewer

Length: 882 bp
ATGAAGCAGCTGCTTTCGACTGAAGGCAAGGACAGGAATATGGTGTACTCACCGCTGTCCATCCACATTGTTCTTAGCCTTATAGCGGCCGGGTCAGACGGTCCTACACAAGACCAGTTGCTCGCCTTCCTTAAGTCCAAGTCCACCCAGGAACTCAACGATCTAGCCTCCACCCTCGTGCCTCTGTTCTTTGTGGAAGGATCACCAAATGGCGGGCCTGGTTTGTCATTCACCAATGGTGTTTGGATTGACAAGTCTCTCCCAGTCAAGCCTTCTTTCAAACGGGTAGTGGATACTGCTTACAAGGCTGCCTTAAAGCGAGTGGATTTCGAGCACAAGCCTGATGAAGTTAGAAGTGAAGTGAACTCATGGGCCGAGAAGGAGACTAATGGCCGGATCAAAAGTATTCTTGCTCCTGGCTCAGTTAACAGCCAAACTAAGCTCCTTCTCGCCAATGCATTATACTTTAAAGGAGATTGGGAGGACAAGTTTGATGCATCAGGAACGAAAGAATATGATTTCCACCTTCTCATTGGGAGCTCAGTTAAGACTCCTTTCATGACAAGGTGGATAACAAGTTGGGGAAGGCGGTATATAAGTGTTTTTGACAGTTTCAAAGTCTTGAAACTCCCTTACGAACAAGGTCAACATGGTGAGAAGTGTTTGTCCATGTATGTGTTTCTTCCAAACGATAGAGATGGATTGCCAGCTTTAGTTGAGAGATTTTCTTCCGAGTCTGGGTTCTTAGATGACCATCTTCCGCAGAAAACAGTTAACGTTGGTGCTTTTATGATGCCGAAGTTCAAGTTTTCTTCTAAATTCGAAGCTTCTGAGCTTCTGAAAACTGTAGGATTGAAGTTGCCTTTGTACCTGGAGGTTTGA

Protein Analysis

294

Amino Acids

32.8

Weight (kDa)

8.41

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 4 - 286 2.7e-63 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 53, 86, 213, 589, 761
AclI AACGTT 1 cut(s) 777
AclWI GGATC 2 cut(s) 208, 404
AcoI YGGCCR 2 cut(s) 87, 391
AcsI RAATTY 1 cut(s) 818
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 2 cut(s) 47, 869
AfiI CCNNNNNNNGG 3 cut(s) 85, 212, 738
AflII CTTAAG 1 cut(s) 131
AgsI TTSAA 5 cut(s) 280, 616, 625, 805, 856
AjnI CCWGG 4 cut(s) 147, 217, 415, 870
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 6 cut(s) 10, 442, 540, 710, 827, 835
AluI AGCT 6 cut(s) 10, 442, 540, 710, 827, 835
Alw21I GWGCWC 2 cut(s) 336, 542
Alw26I GTCTC 2 cut(s) 261, 377
AlwI GGATC 2 cut(s) 208, 404
AoxI GGCC 4 cut(s) 87, 215, 372, 391
ApeKI GCWGC 3 cut(s) 7, 10, 308
ApoI RAATTY 1 cut(s) 818
AspS9I GGNCC 3 cut(s) 101, 215, 372
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 4 cut(s) 42, 195, 223, 665
AsuII TTCGAA 1 cut(s) 822
AvaII GGWCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 542
BauI CACGAG 1 cut(s) 176
Bbv12I GWGCWC 2 cut(s) 336, 542
BbvI GCAGC 2 cut(s) 19, 295
BccI CCATC 3 cut(s) 68, 692, 762
BciT130I CCWGG 4 cut(s) 149, 219, 417, 872
BciVI GTATCC 1 cut(s) 286
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 261, 377
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 846
BfrI CTTAAG 1 cut(s) 131
BfuI GTATCC 1 cut(s) 286
BisI GCNGC 4 cut(s) 8, 11, 87, 309
BlsI GCNGC 4 cut(s) 9, 12, 88, 310
Bme1390I CCNGG 5 cut(s) 91, 149, 219, 417, 872
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 3 cut(s) 101, 215, 372
BmrFI CCNGG 5 cut(s) 91, 149, 219, 417, 872
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 3 cut(s) 484, 506, 783
BmuI ACTGGG 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 822
BpuMI CCSGG 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 753
BsaJI CCNNGG 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 212, 738
Bse1I ACTGG 2 cut(s) 115, 263
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 4 cut(s) 149, 219, 417, 872
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 60
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 3 cut(s) 85, 212, 738
BseMII CTCAG 3 cut(s) 435, 555, 822
BseNI ACTGG 2 cut(s) 115, 263
BseX3I CGGCCG 1 cut(s) 87
BseXI GCAGC 2 cut(s) 19, 295
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 4 cut(s) 89, 217, 374, 393
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 336, 542
BsiSI CCGG 2 cut(s) 90, 394
BslI CCNNNNNNNGG 3 cut(s) 85, 212, 738
BsmAI GTCTC 2 cut(s) 261, 377
BsnI GGCC 4 cut(s) 89, 217, 374, 393
Bsp119I TTCGAA 1 cut(s) 822
Bsp1286I GDGCHC 2 cut(s) 336, 542
Bsp143I GATC 3 cut(s) 160, 200, 396
BspACI CCGC 5 cut(s) 53, 86, 213, 589, 761
BspANI GGCC 4 cut(s) 89, 217, 374, 393
BspCNI CTCAG 3 cut(s) 434, 554, 823
BspHI TCATGA 1 cut(s) 558
BspPI GGATC 2 cut(s) 208, 404
BspT104I TTCGAA 1 cut(s) 822
BspTI CTTAAG 1 cut(s) 131
BsrI ACTGG 2 cut(s) 115, 263
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 3 cut(s) 160, 200, 396
BssSI CACGAG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 4 cut(s) 149, 219, 417, 872
Bst4CI ACNGT 4 cut(s) 101, 611, 772, 847
BstAFI CTTAAG 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 822
BstC8I GCNNGC 3 cut(s) 123, 215, 708
BstDEI CTNAG 6 cut(s) 74, 421, 438, 541, 745, 831
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 3 cut(s) 163, 203, 399
BstMAI GTCTC 2 cut(s) 261, 377
BstMBI GATC 3 cut(s) 160, 200, 396
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 4 cut(s) 149, 219, 417, 872
BstSCI CCNGG 5 cut(s) 89, 147, 217, 415, 870
BstSFI CTRYAG 1 cut(s) 846
BstV1I GCAGC 2 cut(s) 19, 295
BstZI CGGCCG 1 cut(s) 87
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 4 cut(s) 89, 217, 374, 393
BtsCI GGATG 1 cut(s) 60
Cac8I GCNNGC 3 cut(s) 123, 215, 708
CciI TCATGA 1 cut(s) 558
Cfr13I GGNCC 3 cut(s) 101, 215, 372
Csp6I GTAC 2 cut(s) 46, 868
CviAII CATG 4 cut(s) 369, 559, 650, 670
CviQI GTAC 2 cut(s) 46, 868
DdeI CTNAG 6 cut(s) 74, 421, 438, 541, 745, 831
DpnI GATC 3 cut(s) 162, 202, 398
DpnII GATC 3 cut(s) 160, 200, 396
DraI TTTAAA 1 cut(s) 469
EaeI YGGCCR 2 cut(s) 87, 391
EagI CGGCCG 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 540
EclXI CGGCCG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 101
Eco52I CGGCCG 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 540
Eco57I CTGAAG 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 540
EcoRII CCWGG 4 cut(s) 147, 217, 415, 870
EcoT22I ATGCAT 2 cut(s) 460, 499
EcoT38I GRGCYC 1 cut(s) 542
FaeI CATG 4 cut(s) 372, 562, 653, 673
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FatI CATG 4 cut(s) 368, 558, 649, 669
FauI CCCGC 1 cut(s) 206
Fnu4HI GCNGC 4 cut(s) 8, 11, 87, 309
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 4 cut(s) 8, 11, 87, 309
FspBI CTAG 1 cut(s) 164
GluI GCNGC 4 cut(s) 8, 11, 87, 309
HaeIII GGCC 4 cut(s) 89, 217, 374, 393
HapII CCGG 2 cut(s) 90, 394
Hin1II CATG 4 cut(s) 372, 562, 653, 673
HincII GTYRAC 3 cut(s) 427, 647, 775
HindII GTYRAC 3 cut(s) 427, 647, 775
HindIII AAGCTT 1 cut(s) 825
HinfI GANTC 2 cut(s) 550, 734
HpaI GTTAAC 2 cut(s) 427, 775
HpaII CCGG 2 cut(s) 90, 394
HphI GGTGA 4 cut(s) 42, 195, 223, 665
Hpy166II GTNNAC 6 cut(s) 46, 144, 364, 427, 647, 775
Hpy188I TCNGA 4 cut(s) 97, 733, 832, 840
Hpy188III TCNNGA 3 cut(s) 501, 559, 622
Hpy8I GTNNAC 6 cut(s) 46, 144, 364, 427, 647, 775
HpyAV CCTTC 8 cut(s) 17, 136, 191, 282, 373, 455, 536, 579
HpyCH4III ACNGT 4 cut(s) 101, 611, 772, 847
HpyCH4IV ACGT 1 cut(s) 777
HpyCH4V TGCA 2 cut(s) 458, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 6 cut(s) 74, 421, 438, 541, 745, 831
HpySE526I ACGT 1 cut(s) 777
Hsp92II CATG 4 cut(s) 372, 562, 653, 673
KspAI GTTAAC 2 cut(s) 427, 775
Kzo9I GATC 3 cut(s) 160, 200, 396
LmnI GCTCC 3 cut(s) 418, 447, 537
Lsp1109I GCAGC 2 cut(s) 19, 295
LweI GCATC 3 cut(s) 484, 506, 783
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 777
MalI GATC 3 cut(s) 162, 202, 398
MboI GATC 3 cut(s) 160, 200, 396
MboII GAAGA 4 cut(s) 674, 720, 749, 804
MhlI GDGCHC 2 cut(s) 336, 542
MluCI AATT 1 cut(s) 818
MlyI GAGTC 2 cut(s) 544, 743
MnlI CCTC 5 cut(s) 178, 185, 192, 475, 868
Mph1103I ATGCAT 2 cut(s) 460, 499
MseI TTAA 6 cut(s) 132, 314, 426, 468, 546, 774
MslI CAYNNNNRTG 2 cut(s) 176, 674
MspA1I CMGCKG 2 cut(s) 10, 55
MspCI CTTAAG 1 cut(s) 131
MspI CCGG 2 cut(s) 90, 394
MspR9I CCNGG 5 cut(s) 91, 149, 219, 417, 872
MvaI CCWGG 4 cut(s) 149, 219, 417, 872
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 1 cut(s) 91
NdeII GATC 3 cut(s) 160, 200, 396
NlaIII CATG 4 cut(s) 372, 562, 653, 673
NmeAIII GCCGAG 1 cut(s) 400
NsiI ATGCAT 2 cut(s) 460, 499
NspV TTCGAA 1 cut(s) 822
OliI CACNNNNGTG 1 cut(s) 176
PagI TCATGA 1 cut(s) 558
PkrI GCNGC 4 cut(s) 9, 12, 88, 310
PleI GAGTC 2 cut(s) 544, 742
PpsI GAGTC 2 cut(s) 544, 742
Psp124BI GAGCTC 1 cut(s) 542
Psp1406I AACGTT 1 cut(s) 777
Psp6I CCWGG 4 cut(s) 147, 217, 415, 870
PspGI CCWGG 4 cut(s) 147, 217, 415, 870
PspPI GGNCC 3 cut(s) 101, 215, 372
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 2 cut(s) 47, 869
RsaNI GTAC 2 cut(s) 46, 868
RseI CAYNNNNRTG 2 cut(s) 176, 674
SacI GAGCTC 1 cut(s) 542
SaqAI TTAA 6 cut(s) 132, 314, 426, 468, 546, 774
SatI GCNGC 4 cut(s) 8, 11, 87, 309
Sau3AI GATC 3 cut(s) 160, 200, 396
Sau96I GGNCC 3 cut(s) 101, 215, 372
SchI GAGTC 2 cut(s) 544, 743
ScrFI CCNGG 5 cut(s) 91, 149, 219, 417, 872
SduI GDGCHC 2 cut(s) 336, 542
SfaNI GCATC 3 cut(s) 484, 506, 783
SfcI CTRYAG 1 cut(s) 846
SfuI TTCGAA 1 cut(s) 822
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 2 cut(s) 176, 674
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 1 cut(s) 818
SsiI CCGC 5 cut(s) 53, 86, 213, 589, 761
SspMI CTAG 1 cut(s) 164
SstI GAGCTC 1 cut(s) 542
StyD4I CCNGG 5 cut(s) 89, 147, 217, 415, 870
TaaI ACNGT 4 cut(s) 101, 611, 772, 847
TaiI ACGT 1 cut(s) 780
TaqI TCGA 3 cut(s) 17, 330, 822
TasI AATT 1 cut(s) 818
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 89
Tru1I TTAA 6 cut(s) 132, 314, 426, 468, 546, 774
Tru9I TTAA 6 cut(s) 132, 314, 426, 468, 546, 774
TseI GCWGC 3 cut(s) 7, 10, 308
TspDTI ATGAA 3 cut(s) 17, 360, 547
Vha464I CTTAAG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 818
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
XspI CTAG 1 cut(s) 164
Zsp2I ATGCAT 2 cut(s) 460, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.