Prupe.5G041900_v2.0.a1

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000163
Physical Location & Seq
Reverse (-)
4623184 .. 4623956
773 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G041900.1

Sequence Viewer

Length: 702 bp
ATGACGCTGTCTTCCTTCTTCAAGACACGATGTCCTCTGCCCCCTCCTCGTTTCACCTCCATCCATAACAACAATTACAACAACATCATAACTCTAAGCACCTCTGTGGTTCCGGTAACAACAGACCTCCGAGAATCAGTGCGCAACCAAACCGACGTCGGCTTAAGAATGACGAATCACCTGTTTCAAACTAAAGCCGACGGGCAGAACATGGTGTACTCGCCGCTGTCCATTCATGTTTTGCTAAGCCTGACAGCAGCTGGTACAAAGGGTGCAACCCAAGACGAGCTGCTCTCTTTCCTAAAGTCTAAGTCCACTGCTGAACTCAACTCCCTCGCCTCCAATCTCGTCCCTCTGGTGTTTGCCGACAGCTCCCCCAGAGAGGTGGTGGATACTTTTTACAAGGGGGTTCCAAAGCAAATCGATTTCCAGAACAAGGCCGAAGAAGCCAGAACTGAAGTCAACTCATGGGCTGCAAAAGAGACTAAGGGCCTTATTGAAGAGGTTCTTCCTTCAAGGACAGGTAATAGCTCAACAAGGCTCATCTTGGCAAATGCATTATACTTCAAAGGAGTTTGGGATAACGAGTTTCATGAATCAAAAACAAAGAAGTATGTTTTCCACCTTCTCAATGGGAGATCAAACATAGAGGCACCCTTCATGACTAGCCACGATGAACAATTTATAAGTGCCTTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

234

Amino Acids

26.04

Weight (kDa)

7.8

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 686
AatII GACGTC 1 cut(s) 159
Acc16I TGCGCA 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 652
AciI CCGC 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 2 cut(s) 218, 265
AfiI CCNNNNNNNGG 2 cut(s) 382, 436
AflII CTTAAG 1 cut(s) 163
AgsI TTSAA 5 cut(s) 22, 188, 500, 516, 568
AhdI GACNNNNNGTC 1 cut(s) 30
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 4 cut(s) 260, 289, 372, 531
AluI AGCT 4 cut(s) 260, 289, 372, 531
Alw26I GTCTC 1 cut(s) 476
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 2 cut(s) 438, 490
ApeKI GCWGC 3 cut(s) 257, 289, 473
Asp700I GAANNNNTTC 1 cut(s) 504
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 490
AsuHPI GGTGA 2 cut(s) 46, 170
BanI GGYRCC 1 cut(s) 652
BbsI GAAGAC 1 cut(s) 3
BbvI GCAGC 3 cut(s) 269, 276, 460
BccI CCATC 1 cut(s) 68
BciVI GTATCC 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 1 cut(s) 666
BfrI CTTAAG 1 cut(s) 163
BfuI GTATCC 1 cut(s) 385
BisI GCNGC 4 cut(s) 224, 258, 290, 474
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 4 cut(s) 225, 259, 291, 475
BmeRI GACNNNNNGTC 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 490
BmiI GGNNCC 3 cut(s) 111, 411, 654
BpiI GAAGAC 1 cut(s) 3
BplI GAGNNNNNCTC 2 cut(s) 278, 310
Bpu1102I GCTNAGC 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 436
BseCI ATCGAT 1 cut(s) 423
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 382, 436
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 269, 276, 460
BshFI GGCC 2 cut(s) 440, 492
BshNI GGYRCC 1 cut(s) 652
BshVI ATCGAT 1 cut(s) 423
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 382, 436
BsmAI GTCTC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 2 cut(s) 440, 492
Bsp143I GATC 1 cut(s) 638
Bsp1720I GCTNAGC 1 cut(s) 245
BspACI CCGC 1 cut(s) 224
BspANI GGCC 2 cut(s) 440, 492
BspDI ATCGAT 1 cut(s) 423
BspHI TCATGA 2 cut(s) 592, 660
BspLI GGNNCC 3 cut(s) 111, 411, 654
BspT107I GGYRCC 1 cut(s) 652
BspTI CTTAAG 1 cut(s) 163
BssMI GATC 1 cut(s) 638
BssNI GRCGYC 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 495
BstACI GRCGYC 1 cut(s) 156
BstAFI CTTAAG 1 cut(s) 163
BstDEI CTNAG 4 cut(s) 95, 245, 309, 486
BstF5I GGATG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 1 cut(s) 641
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 1 cut(s) 638
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstV1I GCAGC 3 cut(s) 269, 276, 460
BstV2I GAAGAC 1 cut(s) 3
BstXI CCANNNNNNTGG 1 cut(s) 385
Bsu15I ATCGAT 1 cut(s) 423
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 2 cut(s) 440, 492
BsuTUI ATCGAT 1 cut(s) 423
BtsCI GGATG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 144, 315
CaiI CAGNNNCTG 1 cut(s) 260
CciI TCATGA 2 cut(s) 592, 660
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 490
ClaI ATCGAT 1 cut(s) 423
CseI GACGC 1 cut(s) 13
Csp6I GTAC 2 cut(s) 217, 264
CviAII CATG 5 cut(s) 211, 236, 468, 593, 661
CviQI GTAC 2 cut(s) 217, 264
DdeI CTNAG 4 cut(s) 95, 245, 309, 486
DpnI GATC 1 cut(s) 640
DpnII GATC 1 cut(s) 638
DriI GACNNNNNGTC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 495
Eam1105I GACNNNNNGTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 495
Eco57I CTGAAG 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 490
EcoT22I ATGCAT 1 cut(s) 559
FaeI CATG 5 cut(s) 214, 239, 471, 596, 664
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 1 cut(s) 335
FatI CATG 5 cut(s) 210, 235, 467, 592, 660
Fnu4HI GCNGC 4 cut(s) 224, 258, 290, 474
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 4 cut(s) 224, 258, 290, 474
FspBI CTAG 1 cut(s) 666
FspI TGCGCA 1 cut(s) 143
GlaI GCGC 1 cut(s) 143
GluI GCNGC 4 cut(s) 224, 258, 290, 474
HaeIII GGCC 2 cut(s) 440, 492
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 5 cut(s) 214, 239, 471, 596, 664
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 3 cut(s) 134, 175, 596
HpaII CCGG 1 cut(s) 113
HphI GGTGA 2 cut(s) 46, 170
Hpy166II GTNNAC 3 cut(s) 217, 315, 463
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 4 cut(s) 22, 430, 593, 661
Hpy8I GTNNAC 3 cut(s) 217, 315, 463
Hpy99I CGWCG 3 cut(s) 158, 161, 203
HpyAV CCTTC 4 cut(s) 25, 522, 635, 667
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 275, 476, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 4 cut(s) 95, 245, 309, 486
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 5 cut(s) 214, 239, 471, 596, 664
HspAI GCGC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 638
LmnI GCTCC 1 cut(s) 377
LpnPI CCDG 9 cut(s) 126, 194, 246, 263, 341, 391, 443, 463, 507
Lsp1109I GCAGC 3 cut(s) 269, 276, 460
MaeI CTAG 1 cut(s) 666
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 640
MboI GATC 1 cut(s) 638
MboII GAAGA 5 cut(s) 3, 10, 455, 500, 512
MluCI AATT 2 cut(s) 73, 680
Mph1103I ATGCAT 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 504
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 2 cut(s) 226, 260
MspCI CTTAAG 1 cut(s) 163
MspI CCGG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 446
NdeII GATC 1 cut(s) 638
NlaIII CATG 5 cut(s) 214, 239, 471, 596, 664
NlaIV GGNNCC 3 cut(s) 111, 411, 654
NsbI TGCGCA 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 559
OliI CACNNNNGTG 1 cut(s) 104
PagI TCATGA 2 cut(s) 592, 660
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 3 cut(s) 134, 175, 596
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 4 cut(s) 225, 259, 291, 475
PsiI TTATAA 1 cut(s) 686
PspN4I GGNNCC 3 cut(s) 111, 411, 654
PspPI GGNCC 1 cut(s) 490
PsrI GAACNNNNNNTAC 2 cut(s) 200, 232
PstNI CAGNNNCTG 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 2 cut(s) 218, 265
RsaNI GTAC 2 cut(s) 217, 264
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 4 cut(s) 224, 258, 290, 474
Sau3AI GATC 1 cut(s) 638
Sau96I GGNCC 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 2 cut(s) 73, 680
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 666
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 423
TasI AATT 2 cut(s) 73, 680
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 3 cut(s) 134, 175, 596
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 2 cut(s) 144, 322
TseI GCWGC 3 cut(s) 257, 289, 473
TspDTI ATGAA 5 cut(s) 224, 581, 609, 649, 690
TspRI CASTG 2 cut(s) 144, 322
Tth111I GACNNNGTC 1 cut(s) 7
Vha464I CTTAAG 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 2 cut(s) 385, 629
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 1 cut(s) 666
ZraI GACGTC 1 cut(s) 157
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.