Rroxscaffold_3G00266850

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
60022231 .. 60027023
4793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266850.1

Sequence Viewer

Length: 1086 bp
ATGGTGTACTCGCCGCTGTCCATCTACGTGGTTCTTGGCCTGATAGCAGCTGGGTCAACAAGAGAAACCAACAGGGACCAGATTCTCAATTTCCTGAAGGCAAAGTCCACCGAGGAACTCAATGACTTTGCTTCCAAGCTTGTCCCTCTGGTCTTTGCTGACGGATCCCCAAAGGGAGGGCCTTGCTTATCATTTGCAAATAGTGTTTGGCTCGACAAGTCTCTCAGTTTCAAGACTTCTTTCAAACAGGTAGTGGATACTGCATACAAGGCGGCTTTGAGTCAAGTTGACTTTAAGACCAAGGCTGAGGATATCCGATGTGAAGTGAATTCATGGGCCGAGGAGGTGACTAAAGGCCTTATCATAGAGGTTCTTCCCCCTATGTCAGTTGACAGCACAACAAGGCTCATCCTTGCTAATGCATTTTACTTTAAAGGAGATTGGACTGAGAAGTTCCACACATCACTAACAAAAACAGATGATTTCCACCTTATTGATGGGAGGAGGTCAGTAAAGGCACTCTTTATGACCATCTGGAATAAACAATTCATAAGTGCCTTCGACGGTTTCAAAGTCTTAAAGCTTCCTTACGAACAAGGTGGAGATCACATTAGGTGTTTCTCCATGTATGTGTATCTTCCAAATGCAATAGATGGCCTGCCAGCTTTAGTTGAGAGAGTTTGTTCAGAGTCTGGATTTGTGGATCGCTATCTTCCCCGCTTTGCAGTTAAAGTTGGTAGATTTTTTATCCCGAAGTTTAAGCTCTCTGCTGGCTTTGAGGTTAAAGAAGTTCTGCAAACTTTAGGACTAGACTTGCCACTTCGTCCTGGAAGTTTGTCACAGATGGTGGACTCATCTTTGGGGCTATGTATGTCTTGCATACGCCATAAATCCTTCATTGAAGTTAATGAAGGCACAGAAGCTGCGACTGTTACTTTTGCTTGTGGTTTATCTGACTGTATCTCAATCCGAGATCCGCCGATAGACTTTATGGCAGATCACCCATTCCTTTTCCTGATCAGAGAAGAAACATCTGGAGCAGTGCTATTCATTGGTCATGTCCTCAATCCCATTGCAGATCAATAA

Protein Analysis

361

Amino Acids

40.18

Weight (kDa)

5.93

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 1 - 357 3.1e-76 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 14, 272, 718, 977
AclWI GGATC 4 cut(s) 159, 172, 711, 968
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 4 cut(s) 232, 244, 571, 902
AjnI CCWGG 1 cut(s) 826
AluBI AGCT 6 cut(s) 50, 139, 583, 665, 763, 923
AluI AGCT 6 cut(s) 50, 139, 583, 665, 763, 923
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 4 cut(s) 159, 172, 711, 968
AlwNI CAGNNNCTG 2 cut(s) 692, 923
AoxI GGCC 5 cut(s) 37, 179, 336, 355, 655
ApeKI GCWGC 2 cut(s) 47, 923
ApoI RAATTY 1 cut(s) 328
AspS9I GGNCC 3 cut(s) 76, 179, 336
AsuHPI GGTGA 2 cut(s) 358, 992
AvaII GGWCC 1 cut(s) 76
BamHI GGATCC 1 cut(s) 164
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 59, 910
BccI CCATC 5 cut(s) 29, 491, 539, 647, 838
BciT130I CCWGG 1 cut(s) 828
BciVI GTATCC 1 cut(s) 250
BclI TGATCA 1 cut(s) 1017
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 809
BfuI GTATCC 1 cut(s) 250
BisI GCNGC 4 cut(s) 14, 48, 273, 924
BlsI GCNGC 4 cut(s) 15, 49, 274, 925
Bme1390I CCNGG 1 cut(s) 828
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 3 cut(s) 76, 179, 336
BmiI GGNNCC 2 cut(s) 77, 166
BmrFI CCNGG 1 cut(s) 828
BpmI CTGGAG 1 cut(s) 1056
Bpu10I CCTNAGC 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 708
BsaJI CCNNGG 3 cut(s) 111, 300, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 1071
Bse8I GATNNNNATC 1 cut(s) 708
BseBI CCWGG 1 cut(s) 828
BseDI CCNNGG 3 cut(s) 111, 300, 339
BseGI GGATG 1 cut(s) 408
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 1071
BseMII CTCAG 3 cut(s) 238, 297, 438
BseRI GAGGAG 2 cut(s) 356, 517
BseXI GCAGC 2 cut(s) 59, 910
BseYI CCCAGC 1 cut(s) 50
BshFI GGCC 5 cut(s) 39, 181, 338, 357, 657
BslFI GGGAC 2 cut(s) 89, 128
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 2 cut(s) 89, 128
BsnI GGCC 5 cut(s) 39, 181, 338, 357, 657
Bsp143I GATC 7 cut(s) 164, 604, 703, 973, 997, 1017, 1078
BspACI CCGC 4 cut(s) 14, 272, 718, 977
BspANI GGCC 5 cut(s) 39, 181, 338, 357, 657
BspCNI CTCAG 3 cut(s) 237, 298, 439
BspLI GGNNCC 2 cut(s) 77, 166
BspPI GGATC 4 cut(s) 159, 172, 711, 968
BsrDI GCAATG 1 cut(s) 1071
BssECI CCNNGG 3 cut(s) 111, 300, 339
BssMI GATC 7 cut(s) 164, 604, 703, 973, 997, 1017, 1078
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 3 cut(s) 566, 931, 959
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 3 cut(s) 659, 663, 772
BstDEI CTNAG 3 cut(s) 224, 306, 447
BstF5I GGATG 1 cut(s) 408
BstKTI GATC 7 cut(s) 167, 607, 706, 976, 1000, 1020, 1081
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 7 cut(s) 164, 604, 703, 973, 997, 1017, 1078
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 828
BstSCI CCNGG 1 cut(s) 826
BstV1I GCAGC 2 cut(s) 59, 910
BstX2I RGATCY 2 cut(s) 164, 973
BstXI CCANNNNNNTGG 1 cut(s) 28
BstYI RGATCY 2 cut(s) 164, 973
BsuI GTATCC 1 cut(s) 250
BsuRI GGCC 5 cut(s) 39, 181, 338, 357, 657
BtsCI GGATG 1 cut(s) 408
BtsI GCAGTG 1 cut(s) 1047
BtsIMutI CAGTG 1 cut(s) 1047
Cac8I GCNNGC 3 cut(s) 659, 663, 772
CaiI CAGNNNCTG 2 cut(s) 692, 923
Cfr13I GGNCC 3 cut(s) 76, 179, 336
Csp6I GTAC 1 cut(s) 7
CviAII CATG 3 cut(s) 333, 625, 1058
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 3 cut(s) 224, 306, 447
DpnI GATC 7 cut(s) 166, 606, 705, 975, 999, 1019, 1080
DpnII GATC 7 cut(s) 164, 604, 703, 973, 997, 1017, 1078
DraI TTTAAA 1 cut(s) 433
EciI GGCGGA 1 cut(s) 966
Eco130I CCWWGG 1 cut(s) 300
Eco147I AGGCCT 1 cut(s) 357
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 826
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 336, 628, 1061
FalI AAGNNNNNCTT 2 cut(s) 506, 538
FaqI GGGAC 2 cut(s) 89, 128
FatI CATG 3 cut(s) 332, 624, 1057
FauI CCCGC 1 cut(s) 725
FbaI TGATCA 1 cut(s) 1017
Fnu4HI GCNGC 4 cut(s) 14, 48, 273, 924
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 4 cut(s) 14, 48, 273, 924
FspBI CTAG 1 cut(s) 809
GluI GCNGC 4 cut(s) 14, 48, 273, 924
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 1056
HaeIII GGCC 5 cut(s) 39, 181, 338, 357, 657
Hin1II CATG 3 cut(s) 336, 628, 1061
HincII GTYRAC 3 cut(s) 57, 289, 391
HindII GTYRAC 3 cut(s) 57, 289, 391
HindIII AAGCTT 2 cut(s) 137, 581
HinfI GANTC 4 cut(s) 82, 280, 689, 851
HphI GGTGA 2 cut(s) 358, 992
Hpy166II GTNNAC 6 cut(s) 7, 57, 108, 289, 391, 850
Hpy188I TCNGA 5 cut(s) 317, 688, 955, 971, 1022
Hpy188III TCNNGA 7 cut(s) 94, 232, 535, 693, 751, 1015, 1035
Hpy8I GTNNAC 6 cut(s) 7, 57, 108, 289, 391, 850
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 4 cut(s) 91, 568, 904, 905
HpyCH4III ACNGT 3 cut(s) 566, 931, 959
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 8 cut(s) 197, 263, 422, 647, 725, 796, 879, 1076
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 3 cut(s) 224, 306, 447
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 3 cut(s) 336, 628, 1061
Ksp22I TGATCA 1 cut(s) 1017
Kzo9I GATC 7 cut(s) 164, 604, 703, 973, 997, 1017, 1078
LmnI GCTCC 1 cut(s) 1037
Lsp1109I GCAGC 2 cut(s) 59, 910
MaeI CTAG 1 cut(s) 809
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 3 cut(s) 346, 837, 931
MalI GATC 7 cut(s) 166, 606, 705, 975, 999, 1019, 1080
MboI GATC 7 cut(s) 164, 604, 703, 973, 997, 1017, 1078
MboII GAAGA 4 cut(s) 365, 629, 704, 1037
MflI RGATCY 2 cut(s) 164, 973
MluCI AATT 3 cut(s) 88, 328, 545
MlyI GAGTC 3 cut(s) 289, 698, 845
Mph1103I ATGCAT 1 cut(s) 424
MseI TTAA 7 cut(s) 294, 432, 578, 729, 759, 783, 906
MslI CAYNNNNRTG 2 cut(s) 26, 629
MspA1I CMGCKG 2 cut(s) 16, 50
MspR9I CCNGG 1 cut(s) 828
MvaI CCWGG 1 cut(s) 828
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 7 cut(s) 164, 604, 703, 973, 997, 1017, 1078
NlaIII CATG 3 cut(s) 336, 628, 1061
NlaIV GGNNCC 2 cut(s) 77, 166
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 2 cut(s) 346, 837
NsiI ATGCAT 1 cut(s) 424
PceI AGGCCT 1 cut(s) 357
PfeI GAWTC 1 cut(s) 82
PfoI TCCNGGA 1 cut(s) 826
PkrI GCNGC 4 cut(s) 15, 49, 274, 925
PleI GAGTC 3 cut(s) 288, 697, 845
PpsI GAGTC 3 cut(s) 288, 697, 845
Ppu21I YACGTR 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 826
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 2 cut(s) 77, 166
PspPI GGNCC 3 cut(s) 76, 179, 336
PstNI CAGNNNCTG 2 cut(s) 692, 923
PsuI RGATCY 2 cut(s) 164, 973
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 2 cut(s) 26, 629
SaqAI TTAA 7 cut(s) 294, 432, 578, 729, 759, 783, 906
SatI GCNGC 4 cut(s) 14, 48, 273, 924
Sau3AI GATC 7 cut(s) 164, 604, 703, 973, 997, 1017, 1078
Sau96I GGNCC 3 cut(s) 76, 179, 336
SchI GAGTC 3 cut(s) 289, 698, 845
ScrFI CCNGG 1 cut(s) 828
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 2 cut(s) 26, 629
Sse9I AATT 3 cut(s) 88, 328, 545
SseBI AGGCCT 1 cut(s) 357
SsiI CCGC 4 cut(s) 14, 272, 718, 977
SspMI CTAG 1 cut(s) 809
StuI AGGCCT 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 826
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 566, 931, 959
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 213, 561
TasI AATT 3 cut(s) 88, 328, 545
TatI WGTACW 1 cut(s) 6
TauI GCSGC 2 cut(s) 16, 275
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 7 cut(s) 294, 432, 578, 729, 759, 783, 906
Tru9I TTAA 7 cut(s) 294, 432, 578, 729, 759, 783, 906
TscAI CASTG 1 cut(s) 1047
TseFI GTSAC 2 cut(s) 346, 837
TseI GCWGC 2 cut(s) 47, 923
Tsp45I GTSAC 2 cut(s) 346, 837
TspDTI ATGAA 5 cut(s) 321, 538, 886, 924, 1039
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 1 cut(s) 1047
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 1 cut(s) 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XspI CTAG 1 cut(s) 809
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.