Rh7CG091600

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000163
Physical Location & Seq
Forward (+)
6876679 .. 6880638
3960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG091600.1

Sequence Viewer

Length: 384 bp
ATGTTTCAGTACTATCCTTCGCCTAGTCTCTCTGATACAGAATCCAGTACTACTATTACCATAAGTGAACCATCATCGAGCAATGGTAGATCAAGTCAGCCTGGTTTTGGCACTACTAGTAGCCCAACATTGGGCACTATCACCATAAACCCAAGTTCTGGCACTAGCATCACCATAACGCCAACTTCTGCAACTACCATCACCATAACCTCCAGTTCGGCCTCCACGACTGTCACCATAGCTCCAACTTCTGGCACTACCTCAACTTCTACATCTGGACACACTCCATTTCCATCTGCAACAGAGGTGGCTTTGGCCCTTCATTATTTAAAAGATCGCAGAATAGCTCCGGAATATGGTTCCTGTTCTTTGAACAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

127

Amino Acids

12.96

Weight (kDa)

6.01

Isoelectric Point (pI)

63.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 158, 251
AccIII TCCGGA 1 cut(s) 349
AfaI GTAC 2 cut(s) 11, 49
AfiI CCNNNNNNNGG 6 cut(s) 107, 130, 131, 158, 251, 356
AgsI TTSAA 1 cut(s) 373
AhlI ACTAGT 1 cut(s) 116
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 2 cut(s) 242, 347
AluI AGCT 2 cut(s) 242, 347
Alw26I GTCTC 1 cut(s) 32
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 2 cut(s) 219, 315
AspS9I GGNCC 1 cut(s) 316
AsuHPI GGTGA 4 cut(s) 133, 163, 193, 226
BaeGI GKGCMC 1 cut(s) 137
BccI CCATC 3 cut(s) 79, 206, 301
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 32
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 3 cut(s) 24, 117, 165
BmcAI AGTACT 2 cut(s) 11, 49
Bme1390I CCNGG 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 349
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 6 cut(s) 107, 130, 131, 158, 251, 356
Bse1I ACTGG 2 cut(s) 45, 213
Bse3DI GCAATG 1 cut(s) 88
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 1 cut(s) 102
BseLI CCNNNNNNNGG 6 cut(s) 107, 130, 131, 158, 251, 356
BseMI GCAATG 1 cut(s) 88
BseNI ACTGG 2 cut(s) 45, 213
BseSI GKGCMC 1 cut(s) 137
BshFI GGCC 2 cut(s) 221, 317
BsiSI CCGG 1 cut(s) 350
BslI CCNNNNNNNGG 6 cut(s) 107, 130, 131, 158, 251, 356
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 2 cut(s) 221, 317
Bsp1286I GDGCHC 1 cut(s) 137
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 2 cut(s) 89, 334
BspANI GGCC 2 cut(s) 221, 317
BspEI TCCGGA 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 2 cut(s) 45, 213
BssMI GATC 2 cut(s) 89, 334
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 232
BstKTI GATC 2 cut(s) 92, 337
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 89, 334
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 137
BsuRI GGCC 2 cut(s) 221, 317
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 10, 48
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 1 cut(s) 381
CviJI RGCY 7 cut(s) 100, 123, 221, 242, 311, 317, 347
CviKI_1 RGCY 7 cut(s) 100, 123, 221, 242, 311, 317, 347
CviQI GTAC 2 cut(s) 10, 48
DpnI GATC 2 cut(s) 91, 336
DpnII GATC 2 cut(s) 89, 334
DraI TTTAAA 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 100
FaeI CATG 1 cut(s) 384
FaiI YATR 7 cut(s) 62, 146, 176, 206, 239, 357, 382
FatI CATG 1 cut(s) 380
FspBI CTAG 3 cut(s) 24, 117, 165
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 2 cut(s) 221, 317
HapII CCGG 1 cut(s) 350
Hin1II CATG 1 cut(s) 384
HinfI GANTC 1 cut(s) 41
HpaII CCGG 1 cut(s) 350
HphI GGTGA 4 cut(s) 133, 163, 193, 226
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 276, 350
Hpy8I GTNNAC 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 27, 329
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 191, 299
Hsp92II CATG 1 cut(s) 384
Kpn2I TCCGGA 1 cut(s) 349
Kzo9I GATC 2 cut(s) 89, 334
LmnI GCTCC 2 cut(s) 247, 352
LpnPI CCDG 9 cut(s) 58, 87, 114, 144, 226, 237, 261, 363, 376
LweI GCATC 1 cut(s) 177
MaeI CTAG 3 cut(s) 24, 117, 165
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 91, 336
MboI GATC 2 cut(s) 89, 334
MhlI GDGCHC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 4 cut(s) 220, 232, 271, 298
MroI TCCGGA 1 cut(s) 349
MseI TTAA 1 cut(s) 329
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
NdeII GATC 2 cut(s) 89, 334
NlaIII CATG 1 cut(s) 384
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 224
PfeI GAWTC 1 cut(s) 41
PflMI CCANNNNNTGG 2 cut(s) 158, 251
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 316
RsaI GTAC 2 cut(s) 11, 49
RsaNI GTAC 2 cut(s) 10, 48
SaqAI TTAA 1 cut(s) 329
Sau3AI GATC 2 cut(s) 89, 334
Sau96I GGNCC 1 cut(s) 316
ScaI AGTACT 2 cut(s) 11, 49
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 137
SetI ASST 5 cut(s) 212, 244, 263, 309, 349
SfaNI GCATC 1 cut(s) 177
SpeI ACTAGT 1 cut(s) 116
SspMI CTAG 3 cut(s) 24, 117, 165
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 77
TatI WGTACW 2 cut(s) 9, 47
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 311
Van91I CCANNNNNTGG 2 cut(s) 158, 251
XspI CTAG 3 cut(s) 24, 117, 165
ZrmI AGTACT 2 cut(s) 11, 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.