pycom10g19280

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000163
Physical Location & Seq
Reverse (-)
22419484 .. 22420344
861 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g19280.1

Sequence Viewer

Length: 861 bp
ATGTTTTTCAAGGAGGTTGTGGACACAGTTCACAAGGCGGCTATAAAACAAGTTAACTTTAAAACCAACCCTGAGAAAGCGAGAGCCGAAGTGAACTCATGGGCTGAAAAGGCGACGAAGGGCCTTATCACTGAGGTTCTTGCTCCTGGGACAGTCAAAACCAATACCAGGCTTATATTTTCAAATGCTTTACACTTTAAAGCAGTTTGGAGTGACCCGTTTGATACATCGGAGACACTAGAAGAGGACTACTTCCACCTTCTCGACGGTACTTCTGTTGAGGCGCGCTTCATGAGAAGCTACGATTACCAGTTTGTAAAAGCCTTTGACGGCTTCAAAGTCTCGAAGCTTCCTTACGAACAAGGCGAAGACAATGGGAGACAATTTTGTATGTACTTGTTACTTCCTGATGCGAAAGATGGGCTCCCAGCTTTTGTTGAGAGAGTTTGTTCCGAGCCTGATTTCTTAGATCGTCATCGCCCTGAAACACGAGTCGCGGTTGGTTCCTTCGAAATCCCAAGGTTTAAGATTAGCTCCGGCTTTGAAGCTTCTAAAGTTCTCAAGGATGTAGGATTGGTGTTGCCCTTCAATGGTGAAGGTGATTTGACAGGGATGGTGGAGTCACGTCTAGGTAAGGCCAAAATAATTCACAAATCCTTCATTGAAGTTGATGAAAAAGGCACAGAAGCTGCAGCTGTTACTGTTTGCGACCTTGACGATGAAGCGGATGGTGATGATGAACCATTTATACAGAAAACGATAGACTTTGTGGCTGATCACCCATTTATGTTTATAATCAGAGAGGAAGTGACTGGAGCGGTTCTGTTCATTGGTCATGTTCTCAATCCGTTAAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

287

Amino Acids

32.14

Weight (kDa)

4.98

Isoelectric Point (pI)

21.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 3 - 283 6.5e-66 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 794
AccBSI CCGCTC 1 cut(s) 818
AccII CGCG 2 cut(s) 286, 497
AciI CCGC 4 cut(s) 38, 497, 725, 818
AfaI GTAC 2 cut(s) 271, 395
AfiI CCNNNNNNNGG 2 cut(s) 168, 590
AgsI TTSAA 6 cut(s) 10, 183, 337, 545, 589, 665
AjiI CACGTC 1 cut(s) 626
AjnI CCWGG 2 cut(s) 145, 167
AluBI AGCT 7 cut(s) 300, 349, 431, 534, 548, 689, 695
AluI AGCT 7 cut(s) 300, 349, 431, 534, 548, 689, 695
Alw26I GTCTC 3 cut(s) 227, 346, 373
AlwNI CAGNNNCTG 1 cut(s) 689
AoxI GGCC 2 cut(s) 121, 636
ApeKI GCWGC 2 cut(s) 689, 692
AspLEI GCGC 2 cut(s) 286, 288
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 4 cut(s) 605, 611, 743, 770
AsuII TTCGAA 1 cut(s) 510
BaeI ACNNNNGTAYC 2 cut(s) 261, 294
BanII GRGCYC 1 cut(s) 426
BarI GAAGNNNNNNTAC 2 cut(s) 338, 370
BauI CACGAG 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 676, 704
BccI CCATC 3 cut(s) 413, 607, 722
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 2 cut(s) 147, 169
BclI TGATCA 1 cut(s) 775
BcoDI GTCTC 3 cut(s) 227, 346, 373
BfaI CTAG 2 cut(s) 239, 629
BfmI CTRYAG 1 cut(s) 690
BisI GCNGC 3 cut(s) 39, 690, 693
BlsI GCNGC 3 cut(s) 40, 691, 694
Bme1390I CCNGG 2 cut(s) 147, 169
BmgBI CACGTC 1 cut(s) 626
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 425, 505
BmrFI CCNGG 2 cut(s) 147, 169
BmsI GCATC 1 cut(s) 400
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 834
Bpu14I TTCGAA 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 474
BsaJI CCNNGG 2 cut(s) 146, 518
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 590
Bse1I ACTGG 2 cut(s) 310, 817
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 2 cut(s) 147, 169
BseDI CCNNGG 2 cut(s) 146, 518
BseGI GGATG 3 cut(s) 571, 618, 733
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 168, 590
BseMII CTCAG 2 cut(s) 63, 123
BseNI ACTGG 2 cut(s) 310, 817
BsePI GCGCGC 1 cut(s) 284
BseXI GCAGC 2 cut(s) 676, 704
BseYI CCCAGC 1 cut(s) 427
Bsh1236I CGCG 2 cut(s) 286, 497
BshFI GGCC 2 cut(s) 123, 638
BsiSI CCGG 1 cut(s) 537
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 2 cut(s) 168, 590
BsmAI GTCTC 3 cut(s) 227, 346, 373
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 2 cut(s) 123, 638
Bsp119I TTCGAA 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 2 cut(s) 469, 775
BspACI CCGC 4 cut(s) 38, 497, 725, 818
BspANI GGCC 2 cut(s) 123, 638
BspCNI CTCAG 2 cut(s) 64, 124
BspFNI CGCG 2 cut(s) 286, 497
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 425, 505
BspMAI CTGCAG 1 cut(s) 694
BspT104I TTCGAA 1 cut(s) 510
BsrBI CCGCTC 1 cut(s) 818
BsrI ACTGG 2 cut(s) 310, 817
BssECI CCNNGG 2 cut(s) 146, 518
BssHII GCGCGC 1 cut(s) 284
BssMI GATC 2 cut(s) 469, 775
BssSI CACGAG 1 cut(s) 489
BssT1I CCWWGG 1 cut(s) 518
Bst2BI CACGAG 1 cut(s) 489
Bst2UI CCWGG 2 cut(s) 147, 169
Bst4CI ACNGT 4 cut(s) 28, 154, 269, 703
Bst6I CTCTTC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 3 cut(s) 72, 132, 466
BstF5I GGATG 3 cut(s) 571, 618, 733
BstFNI CGCG 2 cut(s) 286, 497
BstHHI GCGC 2 cut(s) 286, 288
BstKTI GATC 2 cut(s) 472, 778
BstMAI GTCTC 3 cut(s) 227, 346, 373
BstMBI GATC 2 cut(s) 469, 775
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 147, 169
BstSCI CCNGG 2 cut(s) 145, 167
BstSFI CTRYAG 1 cut(s) 690
BstUI CGCG 2 cut(s) 286, 497
BstV1I GCAGC 2 cut(s) 676, 704
BstV2I GAAGAC 1 cut(s) 375
BsuRI GGCC 2 cut(s) 123, 638
BtgZI GCGATG 1 cut(s) 461
BtrI CACGTC 1 cut(s) 626
BtsCI GGATG 3 cut(s) 571, 618, 733
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 286
CaiI CAGNNNCTG 1 cut(s) 689
CciI TCATGA 1 cut(s) 291
CfoI GCGC 2 cut(s) 286, 288
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 270, 394
CviAII CATG 3 cut(s) 99, 292, 836
CviQI GTAC 2 cut(s) 270, 394
DdeI CTNAG 3 cut(s) 72, 132, 466
DpnI GATC 2 cut(s) 471, 777
DpnII GATC 2 cut(s) 469, 775
DraI TTTAAA 2 cut(s) 61, 199
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 518
Eco24I GRGCYC 1 cut(s) 426
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 145, 167
EcoT14I CCWWGG 1 cut(s) 518
EcoT38I GRGCYC 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 518
FaeI CATG 3 cut(s) 102, 295, 839
FaiI YATR 9 cut(s) 44, 100, 176, 293, 392, 749, 788, 794, 837
FaqI GGGAC 1 cut(s) 163
FatI CATG 3 cut(s) 98, 291, 835
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 3 cut(s) 39, 690, 693
FokI GGATG 3 cut(s) 578, 625, 740
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 3 cut(s) 39, 690, 693
FspBI CTAG 2 cut(s) 239, 629
GlaI GCGC 2 cut(s) 285, 287
GluI GCNGC 3 cut(s) 39, 690, 693
GsaI CCCAGC 1 cut(s) 431
GsuI CTGGAG 1 cut(s) 834
HaeIII GGCC 2 cut(s) 123, 638
HapII CCGG 1 cut(s) 537
HhaI GCGC 2 cut(s) 286, 288
Hin1II CATG 3 cut(s) 102, 295, 839
Hin6I GCGC 2 cut(s) 284, 286
HinP1I GCGC 2 cut(s) 284, 286
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 2 cut(s) 347, 546
HinfI GANTC 2 cut(s) 492, 620
HpaI GTTAAC 1 cut(s) 55
HpaII CCGG 1 cut(s) 537
HphI GGTGA 4 cut(s) 605, 611, 743, 770
Hpy166II GTNNAC 4 cut(s) 22, 31, 55, 94
Hpy188I TCNGA 3 cut(s) 232, 454, 800
Hpy188III TCNNGA 4 cut(s) 263, 292, 343, 407
Hpy8I GTNNAC 4 cut(s) 22, 31, 55, 94
Hpy99I CGWCG 2 cut(s) 118, 269
HpyAV CCTTC 6 cut(s) 112, 269, 517, 590, 595, 667
HpyCH4III ACNGT 4 cut(s) 28, 154, 269, 703
HpyCH4IV ACGT 1 cut(s) 625
HpyCH4V TGCA 1 cut(s) 692
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 72, 132, 466
HpySE526I ACGT 1 cut(s) 625
Hsp92II CATG 3 cut(s) 102, 295, 839
HspAI GCGC 2 cut(s) 284, 286
Ksp22I TGATCA 1 cut(s) 775
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 469, 775
LmnI GCTCC 4 cut(s) 148, 429, 539, 815
Lsp1109I GCAGC 2 cut(s) 676, 704
LweI GCATC 1 cut(s) 400
MaeI CTAG 2 cut(s) 239, 629
MaeII ACGT 1 cut(s) 625
MaeIII GTNAC 5 cut(s) 212, 399, 621, 697, 808
MalI GATC 2 cut(s) 471, 777
MbiI CCGCTC 1 cut(s) 818
MboI GATC 2 cut(s) 469, 775
MboII GAAGA 2 cut(s) 254, 380
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 2 cut(s) 383, 645
MlyI GAGTC 2 cut(s) 501, 629
MnlI CCTC 5 cut(s) 7, 127, 238, 274, 796
MseI TTAA 5 cut(s) 54, 60, 198, 525, 851
MspA1I CMGCKG 1 cut(s) 695
MspI CCGG 1 cut(s) 537
MspR9I CCNGG 2 cut(s) 147, 169
MvaI CCWGG 2 cut(s) 147, 169
MvnI CGCG 2 cut(s) 286, 497
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 2 cut(s) 469, 775
NlaIII CATG 3 cut(s) 102, 295, 839
NlaIV GGNNCC 2 cut(s) 425, 505
NmuCI GTSAC 3 cut(s) 212, 621, 808
NspV TTCGAA 1 cut(s) 510
PagI TCATGA 1 cut(s) 291
PauI GCGCGC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PkrI GCNGC 3 cut(s) 40, 691, 694
PleI GAGTC 2 cut(s) 500, 628
PpsI GAGTC 2 cut(s) 500, 628
PsiI TTATAA 1 cut(s) 794
Psp6I CCWGG 2 cut(s) 145, 167
PspFI CCCAGC 1 cut(s) 427
PspGI CCWGG 2 cut(s) 145, 167
PspN4I GGNNCC 2 cut(s) 425, 505
PspPI GGNCC 1 cut(s) 121
PsrI GAACNNNNNNTAC 2 cut(s) 732, 764
PstI CTGCAG 1 cut(s) 694
PstNI CAGNNNCTG 1 cut(s) 689
PteI GCGCGC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 695
RsaI GTAC 2 cut(s) 271, 395
RsaNI GTAC 2 cut(s) 270, 394
SaqAI TTAA 5 cut(s) 54, 60, 198, 525, 851
SatI GCNGC 3 cut(s) 39, 690, 693
Sau3AI GATC 2 cut(s) 469, 775
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 2 cut(s) 501, 629
ScrFI CCNGG 2 cut(s) 147, 169
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 1 cut(s) 690
SfuI TTCGAA 1 cut(s) 510
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 2 cut(s) 383, 645
SsiI CCGC 4 cut(s) 38, 497, 725, 818
SspMI CTAG 2 cut(s) 239, 629
StyD4I CCNGG 2 cut(s) 145, 167
StyI CCWWGG 1 cut(s) 518
TaaI ACNGT 4 cut(s) 28, 154, 269, 703
TaiI ACGT 1 cut(s) 628
TaqI TCGA 3 cut(s) 264, 344, 510
TasI AATT 2 cut(s) 383, 645
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 5 cut(s) 54, 60, 198, 525, 851
Tru9I TTAA 5 cut(s) 54, 60, 198, 525, 851
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 3 cut(s) 212, 621, 808
TseI GCWGC 2 cut(s) 689, 692
Tsp45I GTSAC 3 cut(s) 212, 621, 808
TspDTI ATGAA 6 cut(s) 280, 649, 687, 735, 753, 817
TspGWI ACGGA 1 cut(s) 837
TspRI CASTG 1 cut(s) 136
XspI CTAG 2 cut(s) 239, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.