RLG00000031324

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
4098202 .. 4098759
558 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031324

Sequence Viewer

Length: 558 bp
ATGACAAAGTCGTCGAAACAGTTTATTAGTGTCTTTCAAAGCTTCAAAGTCCTGAAGCTTCCCTACAAACAAGGTAAAGATCATGAGCGAATGTTCTCCATGTACATATTTCTTCCAAATGAAAGGAATGGGCTGCGAGCGTTGGTCGAGAAGTTTTGCTCCAAGTTTGAGTTCATAGATAGCCATCTTCCTTACATATATGTTCCAGTGGGTGAATTCTTAATCCCAAAGTTTAAGATTTCCTGTGGTTTTGAGGCTTCCAAACTTCTGGAGACTTTGGGATTCTCTCCTGGAAGTTTGACTGAGATGGTGGACTCACCTGAGCCCCTACATGTTTCCAACATATTCCACAAAGCCTTCATTGAATTTAATGAAAAAGGCACAGAAGCTGATGCTGTAACGGCTACTGTTGGTGCGACGTGCTCGTTCCCACCCCGACCCCCCCCCCCTGATCCGATAGATTTTGTGGCAGATCACCCATTCCTTTATCTCGTCAGAGAAGAAGTGACTAAAACGGTCATGTTCGTTGGGCAGGTCCTCAATCCTATTGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

186

Amino Acids

20.98

Weight (kDa)

5.75

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 5 - 182 1.5e-34 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 523
AclWI GGATC 1 cut(s) 446
AcsI RAATTY 2 cut(s) 215, 365
AcuI CTGAAG 1 cut(s) 74
AfaI GTAC 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 4 cut(s) 38, 46, 365, 551
AjiI CACGTC 1 cut(s) 420
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 3 cut(s) 42, 58, 389
AluI AGCT 3 cut(s) 42, 58, 389
Alw21I GWGCWC 1 cut(s) 425
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 1 cut(s) 446
AlwNI CAGNNNCTG 1 cut(s) 389
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 2 cut(s) 215, 365
AspS9I GGNCC 1 cut(s) 535
AsuHPI GGTGA 3 cut(s) 224, 309, 467
AvaII GGWCC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 327
BarI GAAGNNNNNNTAC 2 cut(s) 47, 79
Bbv12I GWGCWC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 120
BccI CCATC 2 cut(s) 192, 301
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 523
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 535
BmgBI CACGTC 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 535
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 382
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 1 cut(s) 291
BseJI GATNNNNATC 1 cut(s) 183
BseMII CTCAG 2 cut(s) 294, 312
BseNI ACTGG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 425
BsmAI GTCTC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 327, 425
Bsp1407I TGTACA 1 cut(s) 102
Bsp143I GATC 3 cut(s) 79, 451, 472
BspCNI CTCAG 2 cut(s) 295, 313
BspHI TCATGA 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 523
BspPI GGATC 1 cut(s) 446
BsrGI TGTACA 1 cut(s) 102
BsrI ACTGG 1 cut(s) 206
BssMI GATC 3 cut(s) 79, 451, 472
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 21, 409, 517
BstAUI TGTACA 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 303, 321
BstKTI GATC 3 cut(s) 82, 454, 475
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 3 cut(s) 79, 451, 472
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 120
BstXI CCANNNNNNTGG 1 cut(s) 268
BtrI CACGTC 1 cut(s) 420
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 523
Cac8I GCNNGC 1 cut(s) 138
CaiI CAGNNNCTG 1 cut(s) 389
CciI TCATGA 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 535
Csp6I GTAC 1 cut(s) 103
CviAII CATG 4 cut(s) 83, 100, 332, 520
CviJI RGCY 9 cut(s) 42, 58, 133, 183, 257, 325, 356, 389, 404
CviKI_1 RGCY 9 cut(s) 42, 58, 133, 183, 257, 325, 356, 389, 404
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 303, 321
DpnI GATC 3 cut(s) 81, 453, 474
DpnII GATC 3 cut(s) 79, 451, 472
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 535
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 327
FaeI CATG 4 cut(s) 86, 103, 335, 523
FatI CATG 4 cut(s) 82, 99, 331, 519
Fnu4HI GCNGC 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 290
Hin1II CATG 4 cut(s) 86, 103, 335, 523
HindIII AAGCTT 2 cut(s) 40, 56
HinfI GANTC 2 cut(s) 282, 314
HphI GGTGA 3 cut(s) 224, 309, 467
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 456, 497
Hpy188III TCNNGA 4 cut(s) 52, 83, 148, 269
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 2 cut(s) 16, 421
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 3 cut(s) 21, 409, 517
HpyCH4IV ACGT 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 2 cut(s) 303, 321
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 4 cut(s) 86, 103, 335, 523
Kzo9I GATC 3 cut(s) 79, 451, 472
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 9 cut(s) 65, 219, 254, 256, 276, 303, 333, 462, 518
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 382
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 2 cut(s) 397, 505
MalI GATC 3 cut(s) 81, 453, 474
MboI GATC 3 cut(s) 79, 451, 472
MboII GAAGA 3 cut(s) 104, 179, 512
MhlI GDGCHC 2 cut(s) 327, 425
MluCI AATT 2 cut(s) 215, 365
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 2 cut(s) 247, 548
MseI TTAA 3 cut(s) 221, 234, 369
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 401
NdeII GATC 3 cut(s) 79, 451, 472
NlaIII CATG 4 cut(s) 86, 103, 335, 523
NmuCI GTSAC 1 cut(s) 505
NspI RCATGY 1 cut(s) 335
PagI TCATGA 1 cut(s) 82
PciI ACATGT 1 cut(s) 331
PfeI GAWTC 1 cut(s) 282
PflFI GACNNNGTC 1 cut(s) 7
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PpuMI RGGWCCY 1 cut(s) 535
PscI ACATGT 1 cut(s) 331
Psp5II RGGWCCY 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 1 cut(s) 535
PspPPI RGGWCCY 1 cut(s) 535
PstNI CAGNNNCTG 1 cut(s) 389
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 221, 234, 369
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 3 cut(s) 79, 451, 472
Sau96I GGNCC 1 cut(s) 535
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 327, 425
SetI ASST 7 cut(s) 44, 60, 76, 322, 391, 422, 537
SfaNI GCATC 1 cut(s) 382
SinI GGWCC 1 cut(s) 535
Sse9I AATT 2 cut(s) 215, 365
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 21, 409, 517
TaiI ACGT 1 cut(s) 422
TaqI TCGA 2 cut(s) 14, 147
TasI AATT 2 cut(s) 215, 365
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 3 cut(s) 221, 234, 369
Tru9I TTAA 3 cut(s) 221, 234, 369
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 4 cut(s) 135, 163, 349, 387
TspRI CASTG 1 cut(s) 213
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 535
XapI RAATTY 2 cut(s) 215, 365
XceI RCATGY 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.