Prupe.5G042100_v2.0.a1

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000163
Physical Location & Seq
Reverse (-)
4650411 .. 4652385
1975 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G042100.1

Sequence Viewer

Length: 750 bp
ATGACTCATCCCGCTCAACTGGCAAGTCACTTAGCTCCAAGCAGCGCGACTTCCACCTTTCAATATCTTCAGCAGGGGCAGGCCACCGACTTCCTTCCGATGTTCTCTCAGCAGCCAACGCCATTCACGAAACTTGGCGGGGATGCTCAAAGCTTGTCGAACCTTCGTCATGTCCGGGTCGAGAACGAGCTTCTTTCGGATGGCATCATCTGCAAGCATAAGACAAAAGACTATGTCTTCCACCTTCTCAATGGGAGATCAATAATAGAGGCACCCTTCATGACTATCTACAAGAGGCAGTTTATAAGTGCCTTTGACGGCTTCAAAGTCTTGAAACTTCCATACAAGCAAGCATACGATGAGAAGAGGCGTTTTTGCACGTGCTTGTTTCTTCCAGATGAAAAAGATGGTCTGCCAGCTCTGGTTGAGAGAGTTTGTTCTGAGCCAGGCTTCTTAGATCGCCATATTCCATATTTCAAAGATGAAGTGGTTTGGGGCATTCTCGAGCAGTTAGGTTTGAAGCTTCCTTTCCACTTGACAGAGATGGTGGAAGCGCCTCCGGGTCAGGACCCTTTTGTCTCCAAAATGCTCCATAAAGCCGTCATCGAAGTTAATGAAGAAGGAACGGAAGTTGCCGCTGTTACAGTGACGAACTTTGTGGCAGATCACCCATTCCTGTTTTTGATCAGAGAGGAAATGACTGGAGCGGTGTTGTTCATTGGGCAGCTGCTCAATCCTCTTCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

250

Amino Acids

28.1

Weight (kDa)

5.84

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
AasI GACNNNNNNGTC 1 cut(s) 575
AccB1I GGYRCC 1 cut(s) 271
AccBSI CCGCTC 2 cut(s) 14, 707
AccII CGCG 1 cut(s) 47
AciI CCGC 4 cut(s) 12, 138, 636, 707
AcuI CTGAAG 1 cut(s) 53
AcvI CACGTG 1 cut(s) 381
AfiI CCNNNNNNNGG 1 cut(s) 743
AgsI TTSAA 6 cut(s) 62, 325, 334, 478, 520, 743
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 6 cut(s) 35, 153, 190, 419, 523, 727
AluI AGCT 6 cut(s) 35, 153, 190, 419, 523, 727
Alw26I GTCTC 1 cut(s) 583
Ama87I CYCGRG 1 cut(s) 503
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 4 cut(s) 42, 112, 724, 727
AspLEI GCGC 2 cut(s) 47, 556
AspS9I GGNCC 1 cut(s) 568
AsuC2I CCSGG 2 cut(s) 176, 561
AsuHPI GGTGA 1 cut(s) 659
AvaI CYCGRG 1 cut(s) 503
AvaII GGWCC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 271
BbrPI CACGTG 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 229
BbvI GCAGC 4 cut(s) 54, 124, 714, 736
BccI CCATC 3 cut(s) 194, 401, 538
BceAI ACGGC 2 cut(s) 334, 584
BciT130I CCWGG 1 cut(s) 447
BclI TGATCA 1 cut(s) 684
BcnI CCSGG 2 cut(s) 176, 561
BcoDI GTCTC 1 cut(s) 583
BfoI RGCGCY 1 cut(s) 557
BisI GCNGC 5 cut(s) 43, 113, 636, 725, 728
BlsI GCNGC 5 cut(s) 44, 114, 637, 726, 729
Bme1390I CCNGG 3 cut(s) 176, 447, 561
Bme18I GGWCC 1 cut(s) 568
BmeT110I CYCGRG 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 568
BmiI GGNNCC 2 cut(s) 273, 570
BmrFI CCNGG 3 cut(s) 176, 447, 561
BmsI GCATC 2 cut(s) 133, 213
BpiI GAAGAC 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 723
BpuMI CCSGG 2 cut(s) 176, 561
BsaAI YACGTR 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 743
Bse1I ACTGG 2 cut(s) 24, 706
BseBI CCWGG 1 cut(s) 447
BseGI GGATG 3 cut(s) 7, 148, 205
BseLI CCNNNNNNNGG 1 cut(s) 743
BseMII CTCAG 2 cut(s) 122, 432
BseNI ACTGG 2 cut(s) 24, 706
BseXI GCAGC 4 cut(s) 54, 124, 714, 736
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 83
BshNI GGYRCC 1 cut(s) 271
BsiHKCI CYCGRG 1 cut(s) 503
BsiSI CCGG 2 cut(s) 175, 560
BslI CCNNNNNNNGG 1 cut(s) 743
BsmAI GTCTC 1 cut(s) 583
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 1 cut(s) 83
BsoBI CYCGRG 1 cut(s) 503
Bsp143I GATC 4 cut(s) 257, 457, 664, 684
BspACI CCGC 4 cut(s) 12, 138, 636, 707
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 2 cut(s) 121, 433
BspFNI CGCG 1 cut(s) 47
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 273, 570
BspT107I GGYRCC 1 cut(s) 271
BsrBI CCGCTC 2 cut(s) 14, 707
BsrI ACTGG 2 cut(s) 24, 706
BssMI GATC 4 cut(s) 257, 457, 664, 684
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 646
Bst6I CTCTTC 2 cut(s) 359, 744
BstAPI GCANNNNNTGC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 381
BstC8I GCNNGC 4 cut(s) 81, 215, 351, 417
BstDEI CTNAG 4 cut(s) 31, 108, 441, 454
BstENI CCTNNNNNAGG 1 cut(s) 741
BstF5I GGATG 3 cut(s) 7, 148, 205
BstFNI CGCG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 2 cut(s) 47, 556
BstKTI GATC 4 cut(s) 260, 460, 667, 687
BstMAI GTCTC 1 cut(s) 583
BstMBI GATC 4 cut(s) 257, 457, 664, 684
BstMWI GCNNNNNNNGC 3 cut(s) 20, 118, 210
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 3 cut(s) 174, 445, 559
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 4 cut(s) 54, 124, 714, 736
BstV2I GAAGAC 1 cut(s) 229
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 3 cut(s) 7, 148, 205
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 4 cut(s) 81, 215, 351, 417
CciI TCATGA 1 cut(s) 279
CfoI GCGC 2 cut(s) 47, 556
Cfr13I GGNCC 1 cut(s) 568
CviAII CATG 2 cut(s) 170, 280
DdeI CTNAG 4 cut(s) 31, 108, 441, 454
DpnI GATC 4 cut(s) 259, 459, 666, 686
DpnII GATC 4 cut(s) 257, 457, 664, 684
DrdI GACNNNNNNGTC 1 cut(s) 575
DseDI GACNNNNNNGTC 1 cut(s) 575
Eam1104I CTCTTC 2 cut(s) 359, 744
EarI CTCTTC 2 cut(s) 359, 744
Eco47I GGWCC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 53
Eco72I CACGTG 1 cut(s) 381
Eco88I CYCGRG 1 cut(s) 503
EcoNI CCTNNNNNAGG 1 cut(s) 741
EcoO109I RGGNCCY 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 445
FaeI CATG 2 cut(s) 173, 283
FatI CATG 2 cut(s) 169, 279
FauI CCCGC 2 cut(s) 19, 131
FbaI TGATCA 1 cut(s) 684
Fnu4HI GCNGC 5 cut(s) 43, 113, 636, 725, 728
FokI GGATG 2 cut(s) 155, 212
Fsp4HI GCNGC 5 cut(s) 43, 113, 636, 725, 728
GlaI GCGC 2 cut(s) 46, 555
GluI GCNGC 5 cut(s) 43, 113, 636, 725, 728
GsuI CTGGAG 1 cut(s) 723
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 1 cut(s) 83
HapII CCGG 2 cut(s) 175, 560
HhaI GCGC 2 cut(s) 47, 556
Hin1II CATG 2 cut(s) 173, 283
Hin6I GCGC 2 cut(s) 45, 554
HinP1I GCGC 2 cut(s) 45, 554
HindIII AAGCTT 2 cut(s) 151, 521
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 175, 560
HphI GGTGA 1 cut(s) 659
Hpy188I TCNGA 4 cut(s) 99, 199, 442, 689
Hpy188III TCNNGA 7 cut(s) 127, 181, 280, 331, 395, 503, 566
HpyAV CCTTC 5 cut(s) 104, 173, 254, 286, 614
HpyCH4III ACNGT 1 cut(s) 646
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 2 cut(s) 213, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 118, 210
HpyF3I CTNAG 4 cut(s) 31, 108, 441, 454
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 2 cut(s) 173, 283
HspAI GCGC 2 cut(s) 45, 554
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 4 cut(s) 257, 457, 664, 684
LmnI GCTCC 3 cut(s) 40, 594, 704
Lsp1109I GCAGC 4 cut(s) 54, 124, 714, 736
LweI GCATC 2 cut(s) 133, 213
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 3 cut(s) 26, 640, 646
MalI GATC 4 cut(s) 259, 459, 666, 686
MbiI CCGCTC 2 cut(s) 14, 707
MboI GATC 4 cut(s) 257, 457, 664, 684
MboII GAAGA 6 cut(s) 59, 229, 376, 383, 629, 731
MnlI CCTC 6 cut(s) 262, 288, 360, 567, 685, 747
MseI TTAA 1 cut(s) 612
MspA1I CMGCKG 2 cut(s) 638, 727
MspI CCGG 2 cut(s) 175, 560
MspR9I CCNGG 3 cut(s) 176, 447, 561
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 20, 118, 210
NciI CCSGG 2 cut(s) 176, 561
NdeII GATC 4 cut(s) 257, 457, 664, 684
NlaIII CATG 2 cut(s) 173, 283
NlaIV GGNNCC 2 cut(s) 273, 570
NmuCI GTSAC 2 cut(s) 26, 646
PaeR7I CTCGAG 1 cut(s) 503
PagI TCATGA 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PctI GAATGC 1 cut(s) 498
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 5 cut(s) 44, 114, 637, 726, 729
PmaCI CACGTG 1 cut(s) 381
PmlI CACGTG 1 cut(s) 381
Ppu21I YACGTR 1 cut(s) 381
PpuMI RGGWCCY 1 cut(s) 568
PsiI TTATAA 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 568
Psp6I CCWGG 1 cut(s) 445
PspCI CACGTG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 273, 570
PspPI GGNCC 1 cut(s) 568
PspPPI RGGWCCY 1 cut(s) 568
PsyI GACNNNGTC 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 727
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 5 cut(s) 43, 113, 636, 725, 728
Sau3AI GATC 4 cut(s) 257, 457, 664, 684
Sau96I GGNCC 1 cut(s) 568
ScrFI CCNGG 3 cut(s) 176, 447, 561
SfaNI GCATC 2 cut(s) 133, 213
Sfr274I CTCGAG 1 cut(s) 503
SinI GGWCC 1 cut(s) 568
SlaI CTCGAG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SsiI CCGC 4 cut(s) 12, 138, 636, 707
StyD4I CCNGG 3 cut(s) 174, 445, 559
TaaI ACNGT 1 cut(s) 646
TaiI ACGT 1 cut(s) 383
TaqI TCGA 4 cut(s) 158, 180, 504, 606
TauI GCSGC 1 cut(s) 638
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 1 cut(s) 651
TseFI GTSAC 2 cut(s) 26, 646
TseI GCWGC 4 cut(s) 42, 112, 724, 727
Tsp45I GTSAC 2 cut(s) 26, 646
TspDTI ATGAA 5 cut(s) 268, 414, 498, 630, 706
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 1 cut(s) 651
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 568
XagI CCTNNNNNAGG 1 cut(s) 741
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.