Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015523.1

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Forward (+)

65215 .. 65547

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015523.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgtatgtgtatcttccaaatacaatagatggcctgccagctttagttgagagagtttgttcagagtctggatttgtggatcactatcttccccgctttgcagttaaagttggtagctttttaatcccgaagtttaagttctctactggctttgaggttaaagatgttctgcaaactttaggactaggcttgccatttcgtcctggaagtctgtcacagatggtggactcatctgtgtggctttttatttctcccatacatcataaatccttcattgaagttaatgaagaaggcacagaagctgcgtctgttagtgttgcttttgctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko03013 ko05146 ko05164 map03013 map05146 map05164

Pfam Domains

Protein Families

Serpin

Protein Analysis

110

Amino Acids

12.16

Weight (kDa)

5.48

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	3 cut(s)	41, 117, 302
AluI	AGCT	3 cut(s)	41, 117, 302
AlwI	GGATC	1 cut(s)	87
AlwNI	CAGNNNCTG	2 cut(s)	68, 302
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	2 cut(s)	23, 214
BciT130I	CCWGG	1 cut(s)	204
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	204
BseJI	GATNNNNATC	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	204
BstC8I	GCNNGC	3 cut(s)	35, 39, 191
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	33
Cac8I	GCNNGC	3 cut(s)	35, 39, 191
CaiI	CAGNNNCTG	2 cut(s)	68, 302
CseI	GACGC	1 cut(s)	294
CviJI	RGCY	7 cut(s)	33, 41, 117, 150, 189, 241, 302
CviKI_1	RGCY	7 cut(s)	33, 41, 117, 150, 189, 241, 302
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	202
FaiI	YATR	3 cut(s)	6, 257, 264
FauI	CCCGC	1 cut(s)	101
Fnu4HI	GCNGC	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	33
HgaI	GACGC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	65, 227
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	69, 127
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	280, 284
HpyCH4V	TGCA	2 cut(s)	101, 172
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	6 cut(s)	47, 51, 54, 132, 189, 216
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	3 cut(s)	5, 80, 299
MlyI	GAGTC	2 cut(s)	74, 221
MnlI	CCTC	1 cut(s)	148
MseI	TTAA	6 cut(s)	105, 122, 135, 159, 282, 331
MslI	CAYNNNNRTG	1 cut(s)	235
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
NdeII	GATC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	213
PfoI	TCCNGGA	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	2 cut(s)	73, 221
PpsI	GAGTC	2 cut(s)	73, 221
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PstNI	CAGNNNCTG	2 cut(s)	68, 302
RseI	CAYNNNNRTG	1 cut(s)	235
SaqAI	TTAA	6 cut(s)	105, 122, 135, 159, 282, 331
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	79
SchI	GAGTC	2 cut(s)	74, 221
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	4 cut(s)	43, 119, 159, 304
SmiMI	CAYNNNNRTG	1 cut(s)	235
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	202
Tru1I	TTAA	6 cut(s)	105, 122, 135, 159, 282, 331
Tru9I	TTAA	6 cut(s)	105, 122, 135, 159, 282, 331
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	262, 300
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.