Rorug05G0027900

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
1791507 .. 1791713
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0027900.1

Sequence Viewer

Length: 207 bp
ATGGGAATGAGTTGTCTTGAATGTTGCGGCCCTTGTAAAAAGAATGACCATGATGATGATGATGGTGAGCACCGCTCTATTGAAATGGTCAAATATTGTATCGTTTGTGGGTGTGTGGGTAATCACTGGGGTGATGACTGCCCCTGTTGGTCTGAAGCTGAAGTGGATAATTCCAAGTTAAGTGAAGATGATGATGGTTTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

68

Amino Acids

7.58

Weight (kDa)

4.15

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 75
AciI CCGC 2 cut(s) 27, 73
AcuI CTGAAG 2 cut(s) 174, 180
AgsI TTSAA 2 cut(s) 20, 83
AleI CACNNNNGTG 1 cut(s) 129
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw21I GWGCWC 1 cut(s) 72
AoxI GGCC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 77, 143
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 2 cut(s) 56, 188
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 136
BmuI ACTGGG 1 cut(s) 136
BplI GAGNNNNNCTC 2 cut(s) 59, 91
Bse1I ACTGG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 131
BshFI GGCC 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 72
BsnI GGCC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 72
BspACI CCGC 2 cut(s) 27, 73
BspANI GGCC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 75
BsrI ACTGG 1 cut(s) 131
BsuRI GGCC 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 29
CviAII CATG 1 cut(s) 50
CviJI RGCY 2 cut(s) 30, 158
CviKI_1 RGCY 2 cut(s) 30, 158
Eco57I CTGAAG 2 cut(s) 174, 180
FaeI CATG 1 cut(s) 53
FaiI YATR 1 cut(s) 51
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 28
HaeIII GGCC 1 cut(s) 30
Hin1II CATG 1 cut(s) 53
HphI GGTGA 2 cut(s) 77, 143
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 17
Hsp92II CATG 1 cut(s) 53
LpnPI CCDG 2 cut(s) 112, 157
MbiI CCGCTC 1 cut(s) 75
MboII GAAGA 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 169
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 2 cut(s) 54, 129
NlaIII CATG 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 129
PkrI GCNGC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 29
RseI CAYNNNNRTG 2 cut(s) 54, 129
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 72
SetI ASST 1 cut(s) 160
SgeI CNNG 6 cut(s) 29, 45, 62, 139, 156, 187
SmiMI CAYNNNNRTG 2 cut(s) 54, 129
Sse9I AATT 1 cut(s) 169
SsiI CCGC 2 cut(s) 27, 73
SspI AATATT 1 cut(s) 95
TasI AATT 1 cut(s) 169
TauI GCSGC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 131
TspRI CASTG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.