RLG00000025378

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000163
Physical Location & Seq
Reverse (-)
45408223 .. 45408970
748 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025378

Sequence Viewer

Length: 489 bp
ATGTCATCAAGAATGTTACAAACAGGTGGTGTTGGATTTTACAAGGCTGCTCTAAATCAGGTCGATTTCAAAACCAATCCGGAACTAGTCAGAAGAAAAAGTGAATTCATGGGTGGAGAAAGAGACCAATGGCCTCATATCCCTCAGATTCTTCCTCCCGGATCAGTCAACACTGCGACGATGATCATCTTTGCAAACGCCTTATACTCAAAGCAACGTGGAATGATCGATACTTCAATGCATCGAAAACAATCAACAATCCCAAAGTTTAAGATGTCTTCCGGGTTTAAAACTTCGAGTGCTACGAAGAAACTAGGGCTGGGTTGTGATTTAATGGCCATATTTCATGAGGCTGTAATAGAGGTCGCTGAAAATGGCACAACAGCTGCAGCTGCTACTTGTGCTCGTGGTATTTTGGCGATAGTGCGGTCTGTAAGCCTGAAGAGGAAGAAGACTTTGTGGCTGATCACACCTTCATGTTTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

163

Amino Acids

17.76

Weight (kDa)

10.07

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 461
AgsI TTSAA 2 cut(s) 70, 237
AhlI ACTAGT 1 cut(s) 85
AluBI AGCT 2 cut(s) 386, 392
AluI AGCT 2 cut(s) 386, 392
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 1 cut(s) 169
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 2 cut(s) 131, 336
ApeKI GCWGC 4 cut(s) 47, 386, 389, 392
ApoI RAATTY 1 cut(s) 104
AsuC2I CCSGG 2 cut(s) 159, 283
BalI TGGCCA 1 cut(s) 338
BauI CACGAG 1 cut(s) 405
BbsI GAAGAC 2 cut(s) 270, 458
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 4 cut(s) 34, 373, 379, 401
BclI TGATCA 2 cut(s) 183, 465
BcnI CCSGG 2 cut(s) 159, 283
BcoDI GTCTC 1 cut(s) 117
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 2 cut(s) 86, 314
BfmI CTRYAG 1 cut(s) 387
BisI GCNGC 4 cut(s) 48, 387, 390, 393
BlsI GCNGC 4 cut(s) 49, 388, 391, 394
Bme1390I CCNGG 2 cut(s) 159, 283
BmrFI CCNGG 2 cut(s) 159, 283
BmsI GCATC 1 cut(s) 250
BpiI GAAGAC 2 cut(s) 270, 458
BpuMI CCSGG 2 cut(s) 159, 283
Bsa29I ATCGAT 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 79
Bse8I GATNNNNATC 1 cut(s) 185
BseAI TCCGGA 1 cut(s) 79
BseCI ATCGAT 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 185
BseMII CTCAG 1 cut(s) 158
BseXI GCAGC 4 cut(s) 34, 373, 379, 401
BseYI CCCAGC 1 cut(s) 319
BshFI GGCC 2 cut(s) 133, 338
BshVI ATCGAT 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 406
BsiSI CCGG 3 cut(s) 80, 159, 282
BsmAI GTCTC 1 cut(s) 117
BsnI GGCC 2 cut(s) 133, 338
Bso31I GGTCTC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 406
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 4 cut(s) 161, 183, 225, 465
BspACI CCGC 1 cut(s) 427
BspANI GGCC 2 cut(s) 133, 338
BspCNI CTCAG 1 cut(s) 157
BspDI ATCGAT 1 cut(s) 228
BspEI TCCGGA 1 cut(s) 79
BspHI TCATGA 1 cut(s) 346
BspMAI CTGCAG 1 cut(s) 391
BspPI GGATC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 117
BssMI GATC 4 cut(s) 161, 183, 225, 465
BssSI CACGAG 1 cut(s) 405
Bst2BI CACGAG 1 cut(s) 405
Bst6I CTCTTC 1 cut(s) 437
BstDEI CTNAG 1 cut(s) 144
BstKTI GATC 4 cut(s) 164, 186, 228, 468
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 4 cut(s) 161, 183, 225, 465
BstMWI GCNNNNNNNGC 2 cut(s) 392, 401
BstSCI CCNGG 2 cut(s) 157, 281
BstSFI CTRYAG 1 cut(s) 387
BstV1I GCAGC 4 cut(s) 34, 373, 379, 401
BstV2I GAAGAC 2 cut(s) 270, 458
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 2 cut(s) 133, 338
BsuTUI ATCGAT 1 cut(s) 228
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
CciI TCATGA 1 cut(s) 346
ClaI ATCGAT 1 cut(s) 228
CviAII CATG 3 cut(s) 109, 347, 477
CviJI RGCY 9 cut(s) 47, 133, 319, 338, 353, 386, 392, 438, 463
CviKI_1 RGCY 9 cut(s) 47, 133, 319, 338, 353, 386, 392, 438, 463
DdeI CTNAG 1 cut(s) 144
DpnI GATC 4 cut(s) 163, 185, 227, 467
DpnII GATC 4 cut(s) 161, 183, 225, 465
DraI TTTAAA 1 cut(s) 289
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Eco31I GGTCTC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 461
EcoRI GAATTC 1 cut(s) 104
EcoT22I ATGCAT 1 cut(s) 243
FaeI CATG 3 cut(s) 112, 350, 480
FaiI YATR 7 cut(s) 110, 138, 205, 341, 348, 478, 487
FatI CATG 3 cut(s) 108, 346, 476
FbaI TGATCA 2 cut(s) 183, 465
Fnu4HI GCNGC 4 cut(s) 48, 387, 390, 393
Fsp4HI GCNGC 4 cut(s) 48, 387, 390, 393
FspBI CTAG 2 cut(s) 86, 314
GluI GCNGC 4 cut(s) 48, 387, 390, 393
GsaI CCCAGC 1 cut(s) 323
HaeIII GGCC 2 cut(s) 133, 338
HapII CCGG 3 cut(s) 80, 159, 282
Hin1II CATG 3 cut(s) 112, 350, 480
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 1 cut(s) 148
HpaII CCGG 3 cut(s) 80, 159, 282
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 92, 147
Hpy188III TCNNGA 3 cut(s) 9, 80, 347
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 483
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 194, 241, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 401
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 3 cut(s) 112, 350, 480
Kpn2I TCCGGA 1 cut(s) 79
Ksp22I TGATCA 2 cut(s) 183, 465
Kzo9I GATC 4 cut(s) 161, 183, 225, 465
LpnPI CCDG 7 cut(s) 9, 44, 93, 172, 295, 305, 452
Lsp1109I GCAGC 4 cut(s) 34, 373, 379, 401
LweI GCATC 1 cut(s) 250
MaeI CTAG 2 cut(s) 86, 314
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 15
MalI GATC 4 cut(s) 163, 185, 227, 467
MboI GATC 4 cut(s) 161, 183, 225, 465
MboII GAAGA 7 cut(s) 105, 143, 270, 319, 454, 460, 463
MhlI GDGCHC 1 cut(s) 406
MlsI TGGCCA 1 cut(s) 338
MluCI AATT 1 cut(s) 104
MluNI TGGCCA 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 6 cut(s) 144, 153, 165, 343, 355, 438
Mox20I TGGCCA 1 cut(s) 338
Mph1103I ATGCAT 1 cut(s) 243
MroI TCCGGA 1 cut(s) 79
MscI TGGCCA 1 cut(s) 338
MseI TTAA 3 cut(s) 270, 288, 332
MslI CAYNNNNRTG 1 cut(s) 475
Msp20I TGGCCA 1 cut(s) 338
MspA1I CMGCKG 2 cut(s) 386, 392
MspI CCGG 3 cut(s) 80, 159, 282
MspR9I CCNGG 2 cut(s) 159, 283
MwoI GCNNNNNNNGC 2 cut(s) 392, 401
NciI CCSGG 2 cut(s) 159, 283
NdeII GATC 4 cut(s) 161, 183, 225, 465
NlaIII CATG 3 cut(s) 112, 350, 480
NsiI ATGCAT 1 cut(s) 243
PagI TCATGA 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PfeI GAWTC 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 4 cut(s) 49, 388, 391, 394
PspFI CCCAGC 1 cut(s) 319
PstI CTGCAG 1 cut(s) 391
PvuII CAGCTG 2 cut(s) 386, 392
RseI CAYNNNNRTG 1 cut(s) 475
SaqAI TTAA 3 cut(s) 270, 288, 332
SatI GCNGC 4 cut(s) 48, 387, 390, 393
Sau3AI GATC 4 cut(s) 161, 183, 225, 465
ScrFI CCNGG 2 cut(s) 159, 283
SduI GDGCHC 1 cut(s) 406
SetI ASST 7 cut(s) 28, 63, 220, 366, 388, 394, 475
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 475
SpeI ACTAGT 1 cut(s) 85
Sse9I AATT 1 cut(s) 104
SsiI CCGC 1 cut(s) 427
SspMI CTAG 2 cut(s) 86, 314
StyD4I CCNGG 2 cut(s) 157, 281
TaiI ACGT 1 cut(s) 220
TaqI TCGA 4 cut(s) 63, 228, 244, 296
TasI AATT 1 cut(s) 104
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 3 cut(s) 270, 288, 332
Tru9I TTAA 3 cut(s) 270, 288, 332
TscAI CASTG 1 cut(s) 178
TseI GCWGC 4 cut(s) 47, 386, 389, 392
TspDTI ATGAA 3 cut(s) 97, 335, 465
TspRI CASTG 1 cut(s) 178
XapI RAATTY 1 cut(s) 104
XspI CTAG 2 cut(s) 86, 314
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.