Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8284591.1

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Forward (+)

117 .. 674

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8284591.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgaccagctgcagggagacgcagtacataagtgaatttgatggattcaaagtcttaaaacttctgtaccgaacaggaaaagacaagcggctgtattccatgtgcttgtttcttccggatgcaaaagatggtctgccagctatggtcgagagacttaattctgagtgtggcttaagaagccacattccatattcagaagaaatggtgggtgagttcagaattccaaagttcaagttttctttcgactttgcagctacccctgttcttaaggagttgggacttctgggaggtttgacagaggaggtgaaatcacgcgtgggtgagccactatatattcccagcatctatcagaaagccgtcattgaagttaatgaggaaggcaccgaagctgcagctgttactttcggggtggaaatatatgcggcttcaccttgtcctcccaaacctaaggtgatagactttgtggctgatcacccattcatgttcgtgattagagaagaagtaacggaaacagttctgttcattggttatgtgctcaatccactacttaagggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko03013 ko05146 ko05164 map03013 map05146 map05164

Pfam Domains

Protein Families

Serpin

Protein Analysis

185

Amino Acids

20.79

Weight (kDa)

5.21

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	380
AccII	CGCG	1 cut(s)	315
AccIII	TCCGGA	1 cut(s)	115
AciI	CCGC	2 cut(s)	88, 422
AcsI	RAATTY	2 cut(s)	35, 219
AfaI	GTAC	2 cut(s)	26, 68
AfiI	CCNNNNNNNGG	1 cut(s)	12
AflII	CTTAAG	3 cut(s)	172, 266, 548
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	3 cut(s)	49, 232, 365
AluBI	AGCT	5 cut(s)	9, 140, 254, 389, 395
AluI	AGCT	5 cut(s)	9, 140, 254, 389, 395
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	2 cut(s)	11, 145
Aor13HI	TCCGGA	1 cut(s)	115
ApeKI	GCWGC	4 cut(s)	9, 251, 389, 392
ApoI	RAATTY	2 cut(s)	35, 219
Asp700I	GAANNNNTTC	1 cut(s)	513
AsuHPI	GGTGA	6 cut(s)	221, 316, 332, 420, 463, 464
AxyI	CCTNAGG	1 cut(s)	447
BaeI	ACNNNNGTAYC	2 cut(s)	50, 83
BanI	GGYRCC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	263, 376, 404
BccI	CCATC	2 cut(s)	35, 122
BceAI	ACGGC	1 cut(s)	341
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	11, 145
BfmI	CTRYAG	2 cut(s)	10, 390
BfrI	CTTAAG	3 cut(s)	172, 266, 548
BisI	GCNGC	6 cut(s)	10, 89, 252, 390, 393, 423
BlsI	GCNGC	6 cut(s)	11, 90, 253, 391, 394, 424
BmiI	GGNNCC	1 cut(s)	382
BmsI	GCATC	2 cut(s)	109, 351
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse21I	CCTNAGG	1 cut(s)	447
BseAI	TCCGGA	1 cut(s)	115
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	263, 376, 404
BseYI	CCCAGC	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	315
BshNI	GGYRCC	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	2 cut(s)	11, 145
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp13I	TCCGGA	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	2 cut(s)	88, 422
BspCNI	CTCAG	1 cut(s)	154
BspEI	TCCGGA	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	382
BspMAI	CTGCAG	2 cut(s)	14, 394
BspT107I	GGYRCC	1 cut(s)	380
BspTI	CTTAAG	3 cut(s)	172, 266, 548
BssMI	GATC	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	514
BstAFI	CTTAAG	3 cut(s)	172, 266, 548
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	162, 447
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	2 cut(s)	11, 145
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstSFI	CTRYAG	2 cut(s)	10, 390
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	3 cut(s)	263, 376, 404
Bsu36I	CCTNAGG	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	138
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	25, 67
CviAII	CATG	2 cut(s)	100, 481
CviQI	GTAC	2 cut(s)	25, 67
DdeI	CTNAG	2 cut(s)	162, 447
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Eco81I	CCTNAGG	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	2 cut(s)	103, 484
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	2 cut(s)	99, 480
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	6 cut(s)	10, 89, 252, 390, 393, 423
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	6 cut(s)	10, 89, 252, 390, 393, 423
GluI	GCNGC	6 cut(s)	10, 89, 252, 390, 393, 423
GsaI	CCCAGC	1 cut(s)	342
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	103, 484
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	6 cut(s)	221, 316, 332, 420, 463, 464
Hpy188I	TCNGA	4 cut(s)	163, 196, 218, 351
Hpy188III	TCNNGA	3 cut(s)	116, 148, 487
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	4 cut(s)	12, 122, 251, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	2 cut(s)	162, 447
Hsp92II	CATG	2 cut(s)	103, 484
Kpn2I	TCCGGA	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	469
LpnPI	CCDG	7 cut(s)	19, 60, 129, 150, 269, 273, 352
Lsp1109I	GCAGC	3 cut(s)	263, 376, 404
LweI	GCATC	2 cut(s)	109, 351
MaeIII	GTNAC	2 cut(s)	397, 502
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	3 cut(s)	104, 209, 509
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	3 cut(s)	35, 157, 219
MluI	ACGCGT	1 cut(s)	313
MnlI	CCTC	5 cut(s)	281, 292, 295, 367, 447
MroI	TCCGGA	1 cut(s)	115
MroXI	GAANNNNTTC	1 cut(s)	513
MseI	TTAA	6 cut(s)	56, 156, 173, 267, 369, 549
MslI	CAYNNNNRTG	1 cut(s)	485
MspA1I	CMGCKG	2 cut(s)	9, 395
MspCI	CTTAAG	3 cut(s)	172, 266, 548
MspI	CCGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	177
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	2 cut(s)	103, 484
NlaIV	GGNNCC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	6 cut(s)	11, 90, 253, 391, 394, 424
PspFI	CCCAGC	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	382
PstI	CTGCAG	2 cut(s)	14, 394
PvuII	CAGCTG	2 cut(s)	9, 395
RsaI	GTAC	2 cut(s)	26, 68
RsaNI	GTAC	2 cut(s)	25, 67
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	6 cut(s)	56, 156, 173, 267, 369, 549
SatI	GCNGC	6 cut(s)	10, 89, 252, 390, 393, 423
Sau3AI	GATC	1 cut(s)	469
SduI	GDGCHC	1 cut(s)	537
SfaNI	GCATC	2 cut(s)	109, 351
SfcI	CTRYAG	2 cut(s)	10, 390
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	3 cut(s)	172, 266, 548
SmoI	CTYRAG	3 cut(s)	172, 266, 548
Sse9I	AATT	3 cut(s)	35, 157, 219
SsiI	CCGC	2 cut(s)	88, 422
TaaI	ACNGT	1 cut(s)	514
TaqI	TCGA	2 cut(s)	147, 243
TasI	AATT	3 cut(s)	35, 157, 219
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	2 cut(s)	91, 425
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	6 cut(s)	56, 156, 173, 267, 369, 549
Tru9I	TTAA	6 cut(s)	56, 156, 173, 267, 369, 549
TseI	GCWGC	4 cut(s)	9, 251, 389, 392
TspDTI	ATGAA	2 cut(s)	469, 511
TspGWI	ACGGA	1 cut(s)	521
Vha464I	CTTAAG	3 cut(s)	172, 266, 548
XapI	RAATTY	2 cut(s)	35, 219
XmnI	GAANNNNTTC	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.