Rmu_sc0029514.1_g000001

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029514.1
Physical Location & Seq
Forward (+)
1 .. 522
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029514.1_g000001.1.cds

Sequence Viewer

Length: 219 bp
gacccagctgttaacttaatactccataaatccttcattcgagttaatgaagaaggcacagaggcagctgctgctactgctactgttggttggagtttttcgagtggccctcctctgaagaagatggactttgtggcagatcattcattcccttttctgatcagagaagaagcaactcgagcagtggtgcatgttgtcctcgatccaattgcaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

7.8

Weight (kDa)

5.42

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 137
AluBI AGCT 2 cut(s) 8, 68
AluI AGCT 2 cut(s) 8, 68
AlwI GGATC 1 cut(s) 197
AlwNI CAGNNNCTG 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 177
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 65, 68, 71
AspS9I GGNCC 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 177
BbvI GCAGC 3 cut(s) 55, 58, 77
BccI CCATC 1 cut(s) 118
BcgI CGANNNNNNTGC 1 cut(s) 191
BclI TGATCA 1 cut(s) 159
BisI GCNGC 3 cut(s) 66, 69, 72
BlsI GCNGC 3 cut(s) 67, 70, 73
BmeT110I CYCGRG 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 107
BplI GAGNNNNNCTC 2 cut(s) 94, 126
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 55, 58, 77
BseYI CCCAGC 1 cut(s) 4
BshFI GGCC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 177
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 177
Bsp143I GATC 3 cut(s) 139, 159, 202
BspANI GGCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 197
BssMI GATC 3 cut(s) 139, 159, 202
Bst4CI ACNGT 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 71
BstKTI GATC 3 cut(s) 142, 162, 205
BstMBI GATC 3 cut(s) 139, 159, 202
BstMWI GCNNNNNNNGC 3 cut(s) 71, 77, 179
BstNSI RCATGY 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 55, 58, 77
BsuRI GGCC 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 107
CviAII CATG 1 cut(s) 191
CviJI RGCY 3 cut(s) 8, 68, 108
CviKI_1 RGCY 3 cut(s) 8, 68, 108
DpnI GATC 3 cut(s) 141, 161, 204
DpnII GATC 3 cut(s) 139, 159, 202
Eco57I CTGAAG 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 177
FaeI CATG 1 cut(s) 194
FaiI YATR 2 cut(s) 27, 192
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FatI CATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 66, 69, 72
Fsp4HI GCNGC 3 cut(s) 66, 69, 72
GluI GCNGC 3 cut(s) 66, 69, 72
GsaI CCCAGC 1 cut(s) 8
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 1 cut(s) 194
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HpaI GTTAAC 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 4 cut(s) 117, 159, 164, 218
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 43, 47
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 190, 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 77, 179
Hsp92II CATG 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 159
KspAI GTTAAC 1 cut(s) 13
Kzo9I GATC 3 cut(s) 139, 159, 202
LpnPI CCDG 1 cut(s) 18
Lsp1109I GCAGC 3 cut(s) 55, 58, 77
MalI GATC 3 cut(s) 141, 161, 204
MboI GATC 3 cut(s) 139, 159, 202
MboII GAAGA 4 cut(s) 62, 130, 133, 179
MfeI CAATTG 1 cut(s) 207
MluCI AATT 1 cut(s) 207
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 4 cut(s) 55, 120, 123, 209
MseI TTAA 3 cut(s) 12, 17, 45
MspA1I CMGCKG 2 cut(s) 8, 68
MunI CAATTG 1 cut(s) 207
MwoI GCNNNNNNNGC 3 cut(s) 71, 77, 179
NdeII GATC 3 cut(s) 139, 159, 202
NlaIII CATG 1 cut(s) 194
NspI RCATGY 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 177
PkrI GCNGC 3 cut(s) 67, 70, 73
PspFI CCCAGC 1 cut(s) 4
PspPI GGNCC 1 cut(s) 107
PspXI VCTCGAGB 1 cut(s) 177
PstNI CAGNNNCTG 1 cut(s) 71
PvuII CAGCTG 2 cut(s) 8, 68
SaqAI TTAA 3 cut(s) 12, 17, 45
SatI GCNGC 3 cut(s) 66, 69, 72
Sau3AI GATC 3 cut(s) 139, 159, 202
Sau96I GGNCC 1 cut(s) 107
SetI ASST 2 cut(s) 10, 70
Sfr274I CTCGAG 1 cut(s) 177
SgeI CNNG 7 cut(s) 17, 53, 114, 189, 191, 203, 212
SlaI CTCGAG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 1 cut(s) 207
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 4 cut(s) 40, 101, 178, 201
TasI AATT 1 cut(s) 207
Tru1I TTAA 3 cut(s) 12, 17, 45
Tru9I TTAA 3 cut(s) 12, 17, 45
TscAI CASTG 1 cut(s) 189
TseI GCWGC 3 cut(s) 65, 68, 71
TspDTI ATGAA 3 cut(s) 25, 63, 135
TspRI CASTG 1 cut(s) 189
XceI RCATGY 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.