RLG00000021379

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000163
Physical Location & Seq
Forward (+)
74697519 .. 74698214
696 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021379

Sequence Viewer

Length: 546 bp
ATGGTGTACTCGCCCATATCCATCCACATGGTCCTAAGCCTTGTAGCTGCGGCGGAGGCAAACTGCACCAGTTTCTTTCTGTCCTCAAATCCAATTCCAGCAACCACCTCAACTTCCTGGCCTACAATCTCCTCACTTTCCGTTCTGGCCGATGCATCCGCTGCTGGTGGGCCATGTCTGAACTTGGCCAATGGTCTCTGGGTGGACCGATCTCACCATCTCGATGATTCTCACCCCCAACACGTACGTATGTCATCGTCGCAAACACCTTGTACTTCAAAGCTTCTTGGTGTGGTGACTACTTCAATGCATCTTGGACAAGAAACGGTGCGTTTTCACCTTTTGAATGGAAACTCAGTTGATGGAGTACCTTACATGACTAGCTGTTTTGGTGGTTGCCACTCCGTAAGTGCCTTTGACGGCTTTAAAGTCTTGAATCTTGCTTACAAAGGAAGTAGTGATTACAAGGACCATCGATGTTTCTCTATGCACTTGCTTCTTCCGGATGCAAGAGATGGGCTGCCGGCTCTGGTCGAGAGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

182

Amino Acids

19.36

Weight (kDa)

6.33

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 502
AciI CCGC 3 cut(s) 50, 53, 159
AcoI YGGCCR 2 cut(s) 147, 186
AfaI GTAC 4 cut(s) 8, 246, 274, 369
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 4 cut(s) 279, 306, 346, 436
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 3 cut(s) 47, 283, 384
AluI AGCT 3 cut(s) 47, 283, 384
Alw26I GTCTC 1 cut(s) 200
Aor13HI TCCGGA 1 cut(s) 502
AoxI GGCC 4 cut(s) 119, 147, 170, 186
ApeKI GCWGC 3 cut(s) 47, 161, 520
AspS9I GGNCC 4 cut(s) 31, 170, 205, 469
AsuHPI GGTGA 4 cut(s) 206, 224, 307, 329
AvaII GGWCC 3 cut(s) 31, 205, 469
BalI TGGCCA 1 cut(s) 188
BbvI GCAGC 3 cut(s) 34, 148, 507
BccI CCATC 5 cut(s) 29, 225, 356, 480, 509
BceAI ACGGC 1 cut(s) 436
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 381
BisI GCNGC 4 cut(s) 48, 51, 162, 521
BlsI GCNGC 4 cut(s) 49, 52, 163, 522
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 3 cut(s) 31, 205, 469
BmgT120I GGNCC 4 cut(s) 31, 170, 205, 469
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 4 cut(s) 142, 164, 319, 496
Bpu10I CCTNAGC 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 475
BsaAI YACGTR 2 cut(s) 244, 248
BsaI GGTCTC 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 502
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 69
BseAI TCCGGA 1 cut(s) 502
BseBI CCWGG 1 cut(s) 118
BseCI ATCGAT 1 cut(s) 475
BseGI GGATG 3 cut(s) 21, 155, 511
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 34, 148, 507
BsgI GTGCAG 1 cut(s) 49
BshFI GGCC 4 cut(s) 121, 149, 172, 188
BshVI ATCGAT 1 cut(s) 475
BsiSI CCGG 2 cut(s) 503, 524
BsiWI CGTACG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 4 cut(s) 121, 149, 172, 188
Bso31I GGTCTC 1 cut(s) 200
Bsp13I TCCGGA 1 cut(s) 502
Bsp143I GATC 1 cut(s) 209
BspACI CCGC 3 cut(s) 50, 53, 159
BspANI GGCC 4 cut(s) 121, 149, 172, 188
BspCNI CTCAG 1 cut(s) 368
BspDI ATCGAT 1 cut(s) 475
BspEI TCCGGA 1 cut(s) 502
BspTNI GGTCTC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 523
BsrI ACTGG 1 cut(s) 69
BssAI RCCGGY 1 cut(s) 523
BssMI GATC 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 328
BstAPI GCANNNNNTGC 1 cut(s) 161
BstBAI YACGTR 2 cut(s) 244, 248
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 2 cut(s) 35, 355
BstF5I GGATG 3 cut(s) 21, 155, 511
BstKTI GATC 1 cut(s) 212
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 1 cut(s) 209
BstMWI GCNNNNNNNGC 2 cut(s) 56, 161
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstSNI TACGTA 1 cut(s) 248
BstV1I GCAGC 3 cut(s) 34, 148, 507
BstXI CCANNNNNNTGG 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 475
BsuRI GGCC 4 cut(s) 121, 149, 172, 188
BsuTUI ATCGAT 1 cut(s) 475
BtsCI GGATG 3 cut(s) 21, 155, 511
Cac8I GCNNGC 1 cut(s) 525
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 4 cut(s) 31, 170, 205, 469
ClaI ATCGAT 1 cut(s) 475
Csp6I GTAC 4 cut(s) 7, 245, 273, 368
CviAII CATG 3 cut(s) 28, 174, 376
CviQI GTAC 4 cut(s) 7, 245, 273, 368
DdeI CTNAG 2 cut(s) 35, 355
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
DraI TTTAAA 1 cut(s) 427
EaeI YGGCCR 2 cut(s) 147, 186
EciI GGCGGA 1 cut(s) 68
Eco105I TACGTA 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 3 cut(s) 31, 205, 469
EcoRII CCWGG 1 cut(s) 116
EcoT22I ATGCAT 2 cut(s) 157, 312
FaeI CATG 3 cut(s) 31, 177, 379
FaiI YATR 6 cut(s) 17, 29, 175, 251, 377, 488
FatI CATG 3 cut(s) 27, 173, 375
Fnu4HI GCNGC 4 cut(s) 48, 51, 162, 521
FokI GGATG 3 cut(s) 8, 142, 518
Fsp4HI GCNGC 4 cut(s) 48, 51, 162, 521
FspBI CTAG 1 cut(s) 381
GluI GCNGC 4 cut(s) 48, 51, 162, 521
HaeIII GGCC 4 cut(s) 121, 149, 172, 188
HapII CCGG 2 cut(s) 503, 524
Hin1II CATG 3 cut(s) 31, 177, 379
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 2 cut(s) 227, 436
HpaII CCGG 2 cut(s) 503, 524
HphI GGTGA 4 cut(s) 206, 224, 307, 329
Hpy166II GTNNAC 2 cut(s) 7, 205
Hpy188I TCNGA 2 cut(s) 180, 545
Hpy188III TCNNGA 4 cut(s) 221, 433, 503, 535
Hpy8I GTNNAC 2 cut(s) 7, 205
Hpy99I CGWCG 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 2 cut(s) 243, 247
HpyCH4V TGCA 5 cut(s) 66, 155, 310, 490, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 161
HpyF3I CTNAG 2 cut(s) 35, 355
HpySE526I ACGT 2 cut(s) 243, 247
Hsp92II CATG 3 cut(s) 31, 177, 379
Kpn2I TCCGGA 1 cut(s) 502
KroI GCCGGC 1 cut(s) 523
KroNI GCCGGC 1 cut(s) 525
Kzo9I GATC 1 cut(s) 209
Lsp1109I GCAGC 3 cut(s) 34, 148, 507
LweI GCATC 4 cut(s) 142, 164, 319, 496
MaeI CTAG 1 cut(s) 381
MaeII ACGT 2 cut(s) 243, 247
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 1 cut(s) 491
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 1 cut(s) 93
MluNI TGGCCA 1 cut(s) 188
MnlI CCTC 5 cut(s) 49, 94, 118, 142, 531
Mox20I TGGCCA 1 cut(s) 188
Mph1103I ATGCAT 2 cut(s) 157, 312
MroI TCCGGA 1 cut(s) 502
MroNI GCCGGC 1 cut(s) 523
MscI TGGCCA 1 cut(s) 188
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 2 cut(s) 26, 222
Msp20I TGGCCA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 2 cut(s) 503, 524
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 56, 161
NaeI GCCGGC 1 cut(s) 525
NdeII GATC 1 cut(s) 209
NgoMIV GCCGGC 1 cut(s) 523
NlaIII CATG 3 cut(s) 31, 177, 379
NmuCI GTSAC 1 cut(s) 295
NsiI ATGCAT 2 cut(s) 157, 312
PdiI GCCGGC 1 cut(s) 525
PfeI GAWTC 2 cut(s) 227, 436
Pfl23II CGTACG 1 cut(s) 244
PkrI GCNGC 4 cut(s) 49, 52, 163, 522
Ppu21I YACGTR 2 cut(s) 244, 248
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspLI CGTACG 1 cut(s) 244
PspPI GGNCC 4 cut(s) 31, 170, 205, 469
RsaI GTAC 4 cut(s) 8, 246, 274, 369
RsaNI GTAC 4 cut(s) 7, 245, 273, 368
RseI CAYNNNNRTG 2 cut(s) 26, 222
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 4 cut(s) 48, 51, 162, 521
Sau3AI GATC 1 cut(s) 209
Sau96I GGNCC 4 cut(s) 31, 170, 205, 469
ScrFI CCNGG 1 cut(s) 118
SetI ASST 9 cut(s) 49, 110, 246, 250, 271, 285, 342, 373, 386
SfaNI GCATC 4 cut(s) 142, 164, 319, 496
SinI GGWCC 3 cut(s) 31, 205, 469
SmiMI CAYNNNNRTG 2 cut(s) 26, 222
SnaBI TACGTA 1 cut(s) 248
Sse9I AATT 1 cut(s) 93
SsiI CCGC 3 cut(s) 50, 53, 159
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 2 cut(s) 246, 250
TaqI TCGA 3 cut(s) 222, 475, 534
TaqII GACCGA 1 cut(s) 222
TasI AATT 1 cut(s) 93
TatI WGTACW 2 cut(s) 6, 272
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 2 cut(s) 227, 436
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 3 cut(s) 47, 161, 520
Tsp45I GTSAC 1 cut(s) 295
TspGWI ACGGA 2 cut(s) 130, 394
VpaK11BI GGWCC 3 cut(s) 31, 205, 469
XspI CTAG 1 cut(s) 381
Zsp2I ATGCAT 2 cut(s) 157, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.